8-38260019-CTCCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260019
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260015
    reference: chr 8
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.343-20_343-17delATCC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.844-20_844-17delATCC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.172-20_172-17delATCC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*390-20_*390-17delATCC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.985-20_985-17delATCC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.841-20_841-17delATCC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.700-20_700-17delATCC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*390-20_*390-17delATCC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.887-20_887-17delATCC
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21565
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: CTCCA
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

8-38260025-CCCTTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260025
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260020
    reference: chr 8
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.343-16_343-12delCTTAC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.841-16_841-12delCTTAC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.887-16_887-12delCTTAC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.844-16_844-12delCTTAC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*390-16_*390-12delCTTAC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.700-16_700-12delCTTAC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.172-16_172-12delCTTAC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*390-16_*390-12delCTTAC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.985-16_985-12delCTTAC
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4830
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: CCCTTA
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

8-38260026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260026
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260026
    reference: chr 8
allele count: 3
allele frequency: 2.472758444470088e-5
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.172-17C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.343-17C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*390-17C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*390-17C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.700-17C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.844-17C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.841-17C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.985-17C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.887-17C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21566
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/8-38260030-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260030
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260030
    reference: chr 8
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.700-13A>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*390-13A>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.172-13A>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.343-13A>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.844-13A>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*390-13A>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.841-13A>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.985-13A>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.887-13A>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12334
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4833
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

8-38260030-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260030
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260030
    reference: chr 8
allele count: 11
allele frequency: 9.065585389572929e-5
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*390-13A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.343-13A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.700-13A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.172-13A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.985-13A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.844-13A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*390-13A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.841-13A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.887-13A>G
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12207
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21573
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

8-38260031-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260031
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260031
    reference: chr 8
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.887-12C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*390-12C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.985-12C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.841-12C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*390-12C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.172-12C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.700-12C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.844-12C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.343-12C>G
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

8-38260047-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260047
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260047
    reference: chr 8
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.848T>A
  hgvsp: ENSP00000428765.2:p.Ile283Asn
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.704T>A
  hgvsp: ENSP00000297720.5:p.Ile235Asn
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*394T>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.347T>A
  hgvsp: ENSP00000434867.1:p.Ile116Asn
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.989T>A
  hgvsp: ENSP00000369291.4:p.Ile330Asn
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*394T>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.176T>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.845T>A
  hgvsp: ENSP00000431211.1:p.Ile282Asn
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.891T>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile283Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

8-38260047-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260047
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260047
    reference: chr 8
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.347T>C
  hgvsp: ENSP00000434867.1:p.Ile116Thr
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*394T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.989T>C
  hgvsp: ENSP00000369291.4:p.Ile330Thr
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*394T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.848T>C
  hgvsp: ENSP00000428765.2:p.Ile283Thr
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.891T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.704T>C
  hgvsp: ENSP00000297720.5:p.Ile235Thr
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.845T>C
  hgvsp: ENSP00000431211.1:p.Ile282Thr
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.176T>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5881
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12419
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile283Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

8-38260050-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260050
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260050
    reference: chr 8
allele count: 296
allele frequency: 2.438823432479196e-3
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.851C>T
  hgvsp: ENSP00000428765.2:p.Ala284Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.894C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.707C>T
  hgvsp: ENSP00000297720.5:p.Ala236Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.179C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*397C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.992C>T
  hgvsp: ENSP00000369291.4:p.Ala331Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*397C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.350C>T
  hgvsp: ENSP00000434867.1:p.Ala117Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.848C>T
  hgvsp: ENSP00000431211.1:p.Ala283Val
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11831
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 5.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 12197
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala284Val
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

8-38260051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260051
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260051
    reference: chr 8
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.849C>T
  hgvsp: ENST00000524874.1:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.351C>T
  hgvsp: ENST00000527710.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.852C>T
  hgvsp: ENST00000523983.2:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.180C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.993C>T
  hgvsp: ENST00000379957.4:c.993C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*398C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.895C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*398C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.708C>T
  hgvsp: ENST00000297720.5:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala284Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

8-38260055-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260055
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260055
    reference: chr 8
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.355G>T
  hgvsp: ENSP00000434867.1:p.Glu119Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.899G>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.712G>T
  hgvsp: ENSP00000297720.5:p.Glu238Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*402G>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.997G>T
  hgvsp: ENSP00000369291.4:p.Glu333Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.853G>T
  hgvsp: ENSP00000431211.1:p.Glu285Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.184G>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.856G>T
  hgvsp: ENSP00000428765.2:p.Glu286Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*402G>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu286Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

8-38260059-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260059
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260059
    reference: chr 8
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.860G>A
  hgvsp: ENSP00000428765.2:p.Gly287Glu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.857G>A
  hgvsp: ENSP00000431211.1:p.Gly286Glu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.188G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.903G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*406G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.716G>A
  hgvsp: ENSP00000297720.5:p.Gly239Glu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1001G>A
  hgvsp: ENSP00000369291.4:p.Gly334Glu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.359G>A
  hgvsp: ENSP00000434867.1:p.Gly120Glu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*406G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12487
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly287Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

8-38260059-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260059
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260059
    reference: chr 8
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.359G>C
  hgvsp: ENSP00000434867.1:p.Gly120Ala
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.716G>C
  hgvsp: ENSP00000297720.5:p.Gly239Ala
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.857G>C
  hgvsp: ENSP00000431211.1:p.Gly286Ala
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1001G>C
  hgvsp: ENSP00000369291.4:p.Gly334Ala
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.188G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*406G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*406G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.903G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.860G>C
  hgvsp: ENSP00000428765.2:p.Gly287Ala
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly287Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

8-38260060-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260060
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260060
    reference: chr 8
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1002G>C
  hgvsp: ENST00000379957.4:c.1002G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.360G>C
  hgvsp: ENST00000527710.1:c.360G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.904G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*407G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.858G>C
  hgvsp: ENST00000524874.1:c.858G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.861G>C
  hgvsp: ENST00000523983.2:c.861G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.189G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.717G>C
  hgvsp: ENST00000297720.5:c.717G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*407G>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly287Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/8-38260065-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260065
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260065
    reference: chr 8
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.722C>A
  hgvsp: ENSP00000297720.5:p.Thr241Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.194C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*412C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.863C>A
  hgvsp: ENSP00000431211.1:p.Thr288Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1007C>A
  hgvsp: ENSP00000369291.4:p.Thr336Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*412C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.866C>A
  hgvsp: ENSP00000428765.2:p.Thr289Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.909C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.365C>A
  hgvsp: ENSP00000434867.1:p.Thr122Lys
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5119
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr289Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

8-38260067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260067
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260067
    reference: chr 8
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.196G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1009G>A
  hgvsp: ENSP00000369291.4:p.Ala337Thr
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*414G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.868G>A
  hgvsp: ENSP00000428765.2:p.Ala290Thr
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.865G>A
  hgvsp: ENSP00000431211.1:p.Ala289Thr
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.911G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*414G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.367G>A
  hgvsp: ENSP00000434867.1:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.724G>A
  hgvsp: ENSP00000297720.5:p.Ala242Thr
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21485
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala290Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

8-38260067-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260067
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260067
    reference: chr 8
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.724G>C
  hgvsp: ENSP00000297720.5:p.Ala242Pro
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.865G>C
  hgvsp: ENSP00000431211.1:p.Ala289Pro
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.868G>C
  hgvsp: ENSP00000428765.2:p.Ala290Pro
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.911G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.367G>C
  hgvsp: ENSP00000434867.1:p.Ala123Pro
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*414G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1009G>C
  hgvsp: ENSP00000369291.4:p.Ala337Pro
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*414G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.196G>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala290Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

8-38260070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260070
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260070
    reference: chr 8
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.727T>C
  hgvsp: ENST00000297720.5:c.727T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*417T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.370T>C
  hgvsp: ENST00000527710.1:c.370T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.871T>C
  hgvsp: ENST00000523983.2:c.871T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*417T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1012T>C
  hgvsp: ENST00000379957.4:c.1012T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.868T>C
  hgvsp: ENST00000524874.1:c.868T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.914T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.199T>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu291Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

8-38260072-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260072
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260072
    reference: chr 8
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.870G>A
  hgvsp: ENST00000524874.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.729G>A
  hgvsp: ENST00000297720.5:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1014G>A
  hgvsp: ENST00000379957.4:c.1014G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.916G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.873G>A
  hgvsp: ENST00000523983.2:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*419G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.372G>A
  hgvsp: ENST00000527710.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.201G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*419G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu291Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

8-38260072-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260072
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260072
    reference: chr 8
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*419G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.873G>C
  hgvsp: ENSP00000428765.2:p.Leu291Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.870G>C
  hgvsp: ENSP00000431211.1:p.Leu290Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.916G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.729G>C
  hgvsp: ENSP00000297720.5:p.Leu243Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1014G>C
  hgvsp: ENSP00000369291.4:p.Leu338Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.372G>C
  hgvsp: ENSP00000434867.1:p.Leu124Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.201G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*419G>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu291Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

8-38260092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260092
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260092
    reference: chr 8
allele count: 3
allele frequency: 2.471576866040534e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.392C>T
  hgvsp: ENSP00000434867.1:p.Ala131Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*439C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1034C>T
  hgvsp: ENSP00000369291.4:p.Ala345Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.221C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.749C>T
  hgvsp: ENSP00000297720.5:p.Ala250Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.890C>T
  hgvsp: ENSP00000431211.1:p.Ala297Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.893C>T
  hgvsp: ENSP00000428765.2:p.Ala298Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*439C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.936C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala298Val
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

8-38260093-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260093
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260093
    reference: chr 8
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.393T>C
  hgvsp: ENST00000527710.1:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*440T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.750T>C
  hgvsp: ENST00000297720.5:c.750T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*440T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1035T>C
  hgvsp: ENST00000379957.4:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.894T>C
  hgvsp: ENST00000523983.2:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.222T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.937T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.891T>C
  hgvsp: ENST00000524874.1:c.891T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala298Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS

http://identifiers.org/exac.variant/8-38260095-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260095
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260095
    reference: chr 8
allele count: 12
allele frequency: 9.886959100945853e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1037C>A
  hgvsp: ENSP00000369291.4:p.Ala346Asp
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.896C>A
  hgvsp: ENSP00000428765.2:p.Ala299Asp
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*442C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.893C>A
  hgvsp: ENSP00000431211.1:p.Ala298Asp
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.752C>A
  hgvsp: ENSP00000297720.5:p.Ala251Asp
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.224C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.939C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*442C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.395C>A
  hgvsp: ENSP00000434867.1:p.Ala132Asp
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala299Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

8-38260095-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260095
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260095
    reference: chr 8
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*442C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.893C>T
  hgvsp: ENSP00000431211.1:p.Ala298Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*442C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.939C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1037C>T
  hgvsp: ENSP00000369291.4:p.Ala346Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.752C>T
  hgvsp: ENSP00000297720.5:p.Ala251Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.224C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.896C>T
  hgvsp: ENSP00000428765.2:p.Ala299Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.395C>T
  hgvsp: ENSP00000434867.1:p.Ala132Val
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala299Val
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

8-38260098-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260098
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260098
    reference: chr 8
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.899G>C
  hgvsp: ENSP00000428765.2:p.Cys300Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.227G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.755G>C
  hgvsp: ENSP00000297720.5:p.Cys252Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.398G>C
  hgvsp: ENSP00000434867.1:p.Cys133Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.896G>C
  hgvsp: ENSP00000431211.1:p.Cys299Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1040G>C
  hgvsp: ENSP00000369291.4:p.Cys347Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*445G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.942G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*445G>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3243
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys300Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ

8-38260103-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260103
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260102
    reference: chr 8
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.907delC
  hgvsp: ENSP00000428765.2:p.Arg303GlufsTer3
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.406delC
  hgvsp: ENSP00000434867.1:p.Arg136GlufsTer3
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.950delC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1048delC
  hgvsp: ENSP00000369291.4:p.Arg350GlufsTer3
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.763delC
  hgvsp: ENSP00000297720.5:p.Arg255GlufsTer3
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*453delC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*453delC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.235delC
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.904delC
  hgvsp: ENSP00000431211.1:p.Arg302GlufsTer3
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5097
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg303GlufsTer3
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: GC
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/8-38260104-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260104
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260104
    reference: chr 8
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.902C>A
  hgvsp: ENSP00000431211.1:p.Ala301Asp
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.404C>A
  hgvsp: ENSP00000434867.1:p.Ala135Asp
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.905C>A
  hgvsp: ENSP00000428765.2:p.Ala302Asp
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.948C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*451C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1046C>A
  hgvsp: ENSP00000369291.4:p.Ala349Asp
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*451C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.761C>A
  hgvsp: ENSP00000297720.5:p.Ala254Asp
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.233C>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala302Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

8-38260106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260106
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260106
    reference: chr 8
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.950C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*453C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*453C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.907C>T
  hgvsp: ENSP00000428765.2:p.Arg303Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.763C>T
  hgvsp: ENSP00000297720.5:p.Arg255Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.406C>T
  hgvsp: ENSP00000434867.1:p.Arg136Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.904C>T
  hgvsp: ENSP00000431211.1:p.Arg302Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1048C>T
  hgvsp: ENSP00000369291.4:p.Arg350Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.235C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg303Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

8-38260109-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260109
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260109
    reference: chr 8
allele count: 70
allele frequency: 5.768533473975673e-4
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1051G>A
  hgvsp: ENSP00000369291.4:p.Gly351Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.953G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.910G>A
  hgvsp: ENSP00000428765.2:p.Gly304Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.238G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*456G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.907G>A
  hgvsp: ENSP00000431211.1:p.Gly303Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.409G>A
  hgvsp: ENSP00000434867.1:p.Gly137Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.766G>A
  hgvsp: ENSP00000297720.5:p.Gly256Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*456G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12224
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly304Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

8-38260111-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260111
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260111
    reference: chr 8
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*458G>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1053G>T
  hgvsp: ENST00000379957.4:c.1053G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.912G>T
  hgvsp: ENST00000523983.2:c.912G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.768G>T
  hgvsp: ENST00000297720.5:c.768G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.909G>T
  hgvsp: ENST00000524874.1:c.909G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.411G>T
  hgvsp: ENST00000527710.1:c.411G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.240G>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.955G>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*458G>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21463
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly304Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS

8-38260112-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260112
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260112
    reference: chr 8
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.412A>T
  hgvsp: ENSP00000434867.1:p.Met138Leu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.241A>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.913A>T
  hgvsp: ENSP00000428765.2:p.Met305Leu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*459A>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.910A>T
  hgvsp: ENSP00000431211.1:p.Met304Leu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*459A>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1054A>T
  hgvsp: ENSP00000369291.4:p.Met352Leu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.769A>T
  hgvsp: ENSP00000297720.5:p.Met257Leu
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.956A>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met305Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

8-38260124-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260124
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260124
    reference: chr 8
allele count: 2
allele frequency: 1.649266900862567e-5
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1066G>A
  hgvsp: ENSP00000369291.4:p.Gly356Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.968G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.424G>A
  hgvsp: ENSP00000434867.1:p.Gly142Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.925G>A
  hgvsp: ENSP00000428765.2:p.Gly309Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*471G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.781G>A
  hgvsp: ENSP00000297720.5:p.Gly261Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.253G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.922G>A
  hgvsp: ENSP00000431211.1:p.Gly308Ser
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*471G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly309Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

8-38260127-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260127
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260127
    reference: chr 8
allele count: 10
allele frequency: 8.246742536698004e-5
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.427C>T
  hgvsp: ENSP00000434867.1:p.Leu143Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.928C>T
  hgvsp: ENSP00000428765.2:p.Leu310Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.925C>T
  hgvsp: ENSP00000431211.1:p.Leu309Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.784C>T
  hgvsp: ENSP00000297720.5:p.Leu262Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*474C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1069C>T
  hgvsp: ENSP00000369291.4:p.Leu357Phe
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.256C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.971C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*474C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu310Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

8-38260129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260129
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260129
    reference: chr 8
allele count: 3
allele frequency: 2.474349246148263e-5
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.927C>T
  hgvsp: ENST00000524874.1:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.786C>T
  hgvsp: ENST00000297720.5:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*476C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1071C>T
  hgvsp: ENST00000379957.4:c.1071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*476C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.258C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.930C>T
  hgvsp: ENST00000523983.2:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.429C>T
  hgvsp: ENST00000527710.1:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.973C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12374
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu310Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

8-38260131-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260131
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260131
    reference: chr 8
allele count: 3
allele frequency: 2.474471700291988e-5
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.260C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*478C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*478C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1073C>T
  hgvsp: ENSP00000369291.4:p.Thr358Met
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.431C>T
  hgvsp: ENSP00000434867.1:p.Thr144Met
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.932C>T
  hgvsp: ENSP00000428765.2:p.Thr311Met
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.788C>T
  hgvsp: ENSP00000297720.5:p.Thr263Met
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.975C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.929C>T
  hgvsp: ENSP00000431211.1:p.Thr310Met
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4833
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr311Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

8-38260132-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260132
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260132
    reference: chr 8
allele count: 5
allele frequency: 4.12452774157359e-5
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1074G>A
  hgvsp: ENST00000379957.4:c.1074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.930G>A
  hgvsp: ENST00000524874.1:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.261G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*479G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.933G>A
  hgvsp: ENST00000523983.2:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.976G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.432G>A
  hgvsp: ENST00000527710.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.789G>A
  hgvsp: ENST00000297720.5:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*479G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr311Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

8-38260133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260133
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260133
    reference: chr 8
allele count: 2
allele frequency: 1.649838315845047e-5
allele num: 121224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.790G>A
  hgvsp: ENSP00000297720.5:p.Glu264Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*480G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.931G>A
  hgvsp: ENSP00000431211.1:p.Glu311Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.262G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*480G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.977G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.934G>A
  hgvsp: ENSP00000428765.2:p.Glu312Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.433G>A
  hgvsp: ENSP00000434867.1:p.Glu145Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1075G>A
  hgvsp: ENSP00000369291.4:p.Glu359Lys
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu312Lys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum

8-38260136-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260136
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260136
    reference: chr 8
allele count: 171
allele frequency: 1.411030795128231e-3
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.436G>A
  hgvsp: ENSP00000434867.1:p.Glu146Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*483G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.934G>A
  hgvsp: ENSP00000431211.1:p.Glu312Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*483G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.793G>A
  hgvsp: ENSP00000297720.5:p.Glu265Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.937G>A
  hgvsp: ENSP00000428765.2:p.Glu313Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1078G>A
  hgvsp: ENSP00000369291.4:p.Glu360Lys
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.980G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.265G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11847
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 12175
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 12359
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu313Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

8-38260138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260138
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260138
    reference: chr 8
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.936A>G
  hgvsp: ENST00000524874.1:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1080A>G
  hgvsp: ENST00000379957.4:c.1080A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.795A>G
  hgvsp: ENST00000297720.5:c.795A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.438A>G
  hgvsp: ENST00000527710.1:c.438A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.982A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.939A>G
  hgvsp: ENST00000523983.2:c.939A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*485A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*485A>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.267A>G
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu313Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

8-38260142-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260142
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260142
    reference: chr 8
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*489C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.799C>G
  hgvsp: ENSP00000297720.5:p.Leu267Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*489C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.940C>G
  hgvsp: ENSP00000431211.1:p.Leu314Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.943C>G
  hgvsp: ENSP00000428765.2:p.Leu315Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.271C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1084C>G
  hgvsp: ENSP00000369291.4:p.Leu362Val
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.986C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.442C>G
  hgvsp: ENSP00000434867.1:p.Leu148Val
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu315Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

8-38260144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260144
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260144
    reference: chr 8
allele count: 10
allele frequency: 8.254775387561705e-5
allele num: 121142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*491G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.273G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*491G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1086G>A
  hgvsp: ENST00000379957.4:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.942G>A
  hgvsp: ENST00000524874.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.444G>A
  hgvsp: ENST00000527710.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.801G>A
  hgvsp: ENST00000297720.5:c.801G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.945G>A
  hgvsp: ENST00000523983.2:c.945G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.988G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu315Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

8-38260145-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260145
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260145
    reference: chr 8
allele count: 2
allele frequency: 1.651036851142517e-5
allele num: 121136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.802C>T
  hgvsp: ENSP00000297720.5:p.Arg268Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.943C>T
  hgvsp: ENSP00000431211.1:p.Arg315Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.445C>T
  hgvsp: ENSP00000434867.1:p.Arg149Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*492C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.989C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.274C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1087C>T
  hgvsp: ENSP00000369291.4:p.Arg363Ter
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*492C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.946C>T
  hgvsp: ENSP00000428765.2:p.Arg316Ter
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4831
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg316Ter
num of homozygotes: 1
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

8-38260146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260146
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260146
    reference: chr 8
allele count: 2
allele frequency: 1.651091371396493e-5
allele num: 121132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*493G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.944G>A
  hgvsp: ENSP00000431211.1:p.Arg315Gln
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*493G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.275G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.990G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.446G>A
  hgvsp: ENSP00000434867.1:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.803G>A
  hgvsp: ENSP00000297720.5:p.Arg268Gln
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1088G>A
  hgvsp: ENSP00000369291.4:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.947G>A
  hgvsp: ENSP00000428765.2:p.Arg316Gln
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg316Gln
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

8-38260155-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260155
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260155
    reference: chr 8
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.956T>A
  hgvsp: ENSP00000428765.2:p.Leu319His
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*502T>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.284T>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.812T>A
  hgvsp: ENSP00000297720.5:p.Leu271His
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.455T>A
  hgvsp: ENSP00000434867.1:p.Leu152His
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.953T>A
  hgvsp: ENSP00000431211.1:p.Leu318His
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.999T>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*502T>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1097T>A
  hgvsp: ENSP00000369291.4:p.Leu366His
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu319His
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-38260158-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260158
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260158
    reference: chr 8
allele count: 1
allele frequency: 8.263779852904718e-6
allele num: 121010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.458C>G
  hgvsp: ENSP00000434867.1:p.Thr153Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.956C>G
  hgvsp: ENSP00000431211.1:p.Thr319Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.959C>G
  hgvsp: ENSP00000428765.2:p.Thr320Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*505C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.815C>G
  hgvsp: ENSP00000297720.5:p.Thr272Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*505C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1100C>G
  hgvsp: ENSP00000369291.4:p.Thr367Arg
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1002C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.287C>G
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4827
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr320Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

8-38260158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260158
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260158
    reference: chr 8
allele count: 2
allele frequency: 1.652755970580944e-5
allele num: 121010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1100C>T
  hgvsp: ENSP00000369291.4:p.Thr367Met
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*505C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.815C>T
  hgvsp: ENSP00000297720.5:p.Thr272Met
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.956C>T
  hgvsp: ENSP00000431211.1:p.Thr319Met
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.287C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*505C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.959C>T
  hgvsp: ENSP00000428765.2:p.Thr320Met
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.458C>T
  hgvsp: ENSP00000434867.1:p.Thr153Met
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1002C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr320Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum

8-38260159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260159
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260159
    reference: chr 8
allele count: 8
allele frequency: 6.612007405448295e-5
allele num: 120992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1101G>A
  hgvsp: ENST00000379957.4:c.1101G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*506G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.288G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.960G>A
  hgvsp: ENST00000523983.2:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1003G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*506G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.459G>A
  hgvsp: ENST00000527710.1:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.816G>A
  hgvsp: ENST00000297720.5:c.816G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.957G>A
  hgvsp: ENST00000524874.1:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4827
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr320Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

8-38260163-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260163
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260163
    reference: chr 8
allele count: 1
allele frequency: 8.272256506129742e-6
allele num: 120886
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+1G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+1G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+1G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+1G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+1G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+1G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+1G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+1G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+1G>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: c.963+1G>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

8-38260167-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260167
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260167
    reference: chr 8
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+5G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+5G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+5G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+5G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+5G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+5G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+5G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+5G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+5G>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5035
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11966
  bin: 6.25e1
  variant carriers: 0
hgvs: c.963+5G>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/8-38260171-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260171
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260171
    reference: chr 8
allele count: 1
allele frequency: 8.276227364518158e-6
allele num: 120828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+9C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+9C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+9C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+9C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+9C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+9C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+9C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+9C>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+9C>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4819
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

8-38260171-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260171
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260171
    reference: chr 8
allele count: 1
allele frequency: 8.276227364518158e-6
allele num: 120828
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+9C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+9C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+9C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+9C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+9C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+9C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+9C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+9C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+9C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12118
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21370
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5023
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

8-38260174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260174
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260174
    reference: chr 8
allele count: 82
allele frequency: 6.788978672671877e-4
allele num: 120784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+12C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+12C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+12C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+12C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+12C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+12C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+12C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+12C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+12C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4264
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

8-38260175-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260175
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260175
    reference: chr 8
allele count: 3
allele frequency: 2.484472049689441e-5
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+13G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+13G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+13G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+13G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+13G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+13G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+13G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+13G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+13G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12086
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21332
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11534
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

8-38260177-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260177
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260177
    reference: chr 8
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+15C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+15C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+15C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+15C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+15C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+15C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+15C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+15C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+15C>G
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

8-38260180-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260180
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260180
    reference: chr 8
allele count: 8
allele frequency: 6.62745422914423e-5
allele num: 120710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+18T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+18T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+18T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+18T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+18T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+18T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+18T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+18T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+18T>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

8-38260186-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260186
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260186
    reference: chr 8
allele count: 1
allele frequency: 8.290636555074699e-6
allele num: 120618
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+24G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+24G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+24G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+24G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+24G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+24G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+24G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+24G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+24G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21324
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4980
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

8-38260189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260189
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260189
    reference: chr 8
allele count: 4
allele frequency: 3.316639580776757e-5
allele num: 120604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+27C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+27C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+27C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+27C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+27C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+27C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+27C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+27C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+27C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10009
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11859
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5909
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4962
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4782
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

8-38260199-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260199
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260199
    reference: chr 8
allele count: 1
allele frequency: 8.302613662781043e-6
allele num: 120444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+37G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+37G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+37G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+37G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+37G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+37G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+37G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+37G>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+37G>C
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9942
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5674
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

8-38260204-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260204
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260204
    reference: chr 8
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+42C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+42C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+42C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+42C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+42C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+42C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+42C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+42C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+42C>G
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11364
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

8-38260209-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260209
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260209
    reference: chr 8
allele count: 2
allele frequency: 1.663312320154355e-5
allele num: 120242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+47C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+47C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+47C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+47C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+47C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+47C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+47C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+47C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+47C>G
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-38260209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38260209
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38260209
    reference: chr 8
allele count: 1
allele frequency: 8.316561600771776e-6
allele num: 120242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*509+47C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*509+47C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.462+47C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.819+47C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.963+47C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1104+47C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1006+47C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.960+47C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.291+47C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

8-38261861-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38261861
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38261861
    reference: chr 8
allele count: 1
allele frequency: 8.484066922319883e-6
allele num: 117868
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.964-50C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*510-50C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1007-50C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1105-50C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.292-50C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.820-50C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.961-50C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000530448
  gene symbol: LETM2
  hgvsc: ENST00000530448.1:n.4C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.463-50C>G
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*510-50C>G
  variant of: http://identifiers.org/hgnc/14648
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

8-38261870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38261870
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38261870
    reference: chr 8
allele count: 1
allele frequency: 8.466540232999188e-6
allele num: 118112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000530448
  gene symbol: LETM2
  hgvsc: ENST00000530448.1:n.13G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.463-41G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.820-41G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.961-41G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1105-41G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1007-41G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*510-41G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.964-41G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*510-41G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.292-41G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

8-38261872-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38261872
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38261872
    reference: chr 8
allele count: 1
allele frequency: 8.461955050094773e-6
allele num: 118176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1007-39G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*510-39G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.964-39G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1105-39G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.463-39G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.292-39G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.961-39G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000530448
  gene symbol: LETM2
  hgvsc: ENST00000530448.1:n.15G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.820-39G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*510-39G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-38261873-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38261873
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38261873
    reference: chr 8
allele count: 2
allele frequency: 1.692219176227705e-5
allele num: 118188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1105-38T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.463-38T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.961-38T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000530448
  gene symbol: LETM2
  hgvsc: ENST00000530448.1:n.16T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*510-38T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*510-38T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.820-38T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.292-38T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.964-38T>C
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1007-38T>C
  variant of: http://identifiers.org/hgnc/14648
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

8-38261873-TTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38261873
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38261871
    reference: chr 8
allele count: 32
allele frequency: 2.707550681964328e-4
allele num: 118188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000530448
  gene symbol: LETM2
  hgvsc: ENST00000530448.1:n.18_19delCT
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1105-36_1105-35delCT
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.820-36_820-35delCT
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.961-36_961-35delCT
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*510-36_*510-35delCT
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.292-36_292-35delCT
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*510-36_*510-35delCT
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1007-36_1007-35delCT
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.964-36_964-35delCT
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.463-36_463-35delCT
  variant of: http://identifiers.org/hgnc/14648
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27570
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10561
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: TTC
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

8-38261885-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38261885
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38261885
    reference: chr 8
allele count: 2
allele frequency: 1.687564338390401e-5
allele num: 118514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*510-26C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*510-26C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1007-26C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.961-26C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000530448
  gene symbol: LETM2
  hgvsc: ENST00000530448.1:n.28C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.463-26C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.820-26C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.964-26C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.292-26C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1105-26C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10618
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

8-38261886-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38261886
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38261886
    reference: chr 8
allele count: 2
allele frequency: 1.685118716613585e-5
allele num: 118686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1007-25G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.292-25G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.463-25G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000530448
  gene symbol: LETM2
  hgvsc: ENST00000530448.1:n.29G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.961-25G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*510-25G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1105-25G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*510-25G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.964-25G>A
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.820-25G>A
  variant of: http://identifiers.org/hgnc/14648
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

8-38261896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38261896
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38261896
    reference: chr 8
allele count: 1
allele frequency: 8.384619254439656e-6
allele num: 119266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*510-15C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.964-15C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000530448
  gene symbol: LETM2
  hgvsc: ENST00000530448.1:n.39C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.463-15C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1007-15C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*510-15C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.820-15C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.961-15C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.292-15C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1105-15C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10651
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

8-38261897-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38261897
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 38261897
    reference: chr 8
allele count: 1
allele frequency: 8.376752835530836e-6
allele num: 119378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000429019
  ensembl transcript: ENST00000518883
  gene symbol: LETM2
  hgvsc: ENST00000518883.2:c.*510-14C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000528827
  gene symbol: LETM2
  hgvsc: ENST00000528827.1:n.292-14C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000431211
  ensembl transcript: ENST00000524874
  gene symbol: LETM2
  hgvsc: ENST00000524874.1:c.961-14C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000297720
  ensembl transcript: ENST00000297720
  gene symbol: LETM2
  hgvsc: ENST00000297720.5:c.820-14C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000369291
  ensembl transcript: ENST00000379957
  gene symbol: LETM2
  hgvsc: ENST00000379957.4:c.1105-14C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000530448
  gene symbol: LETM2
  hgvsc: ENST00000530448.1:n.40C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl transcript: ENST00000518121
  gene symbol: LETM2
  hgvsc: ENST00000518121.1:n.1007-14C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428944
  ensembl transcript: ENST00000523268
  gene symbol: LETM2
  hgvsc: ENST00000523268.2:c.*510-14C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000428765
  ensembl transcript: ENST00000523983
  gene symbol: LETM2
  hgvsc: ENST00000523983.2:c.964-14C>T
  variant of: http://identifiers.org/hgnc/14648
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165046
  ensembl protein: ENSP00000434867
  ensembl transcript: ENST00000527710
  gene symbol: LETM2
  hgvsc: ENST00000527710.1:c.463-14C>T
  variant of: http://identifiers.org/hgnc/14648
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

DP
type: SiteQuality
SIO_000300: 2.268583e6

FS
type: SiteQuality
SIO_000300: 1.388e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

MQ
type: SiteQuality
SIO_000300: 5.5e1

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6319
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12278
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21565
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.689e0

FS
type: SiteQuality
SIO_000300: 1.052e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.05e1

QD
type: SiteQuality
SIO_000300: 1.114e1

DP
type: SiteQuality
SIO_000300: 2.270071e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4831
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5110
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499775011249437e-5
allele num: 66670
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.5e-1

DP
type: SiteQuality
SIO_000300: 2.270416e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21573
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6340
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4281
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

QD
type: SiteQuality
SIO_000300: 1.259e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

FS
type: SiteQuality
SIO_000300: 6.01e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

DP
type: SiteQuality
SIO_000300: 2.2712e6

GenotypeQuality
all individuals: 12334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6340
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.649719547676895e-4
allele num: 66678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 2.2712e6

FS
type: SiteQuality
SIO_000300: 6.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

QD
type: SiteQuality
SIO_000300: 1.259e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

GenotypeQuality
all individuals: 2802
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21563
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6339
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4834
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

FS
type: SiteQuality
SIO_000300: 2.827e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

QD
type: SiteQuality
SIO_000300: 1.482e1

DP
type: SiteQuality
SIO_000300: 2.271181e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.127e0

GenotypeQuality
all individuals: 12419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4834
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21563
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

FS
type: SiteQuality
SIO_000300: 1.335e0

VQSLOD
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 2.272173e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4834
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21563
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4280
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

DP
type: SiteQuality
SIO_000300: 2.272173e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.064e1

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 1.335e0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21663
bin: 9.75e1
variant carriers: 296

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 38
allele frequency: 3.283221012614481e-3
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.73076923076923e-4
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 239
allele frequency: 3.582671263678609e-3
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.506607929515419e-3
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

FS
type: SiteQuality
SIO_000300: 5.3e-1

QD
type: SiteQuality
SIO_000300: 1.163e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.277e0

DP
type: SiteQuality
SIO_000300: 2.280509e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6372
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2798
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variant carriers: 0

GenotypeQuality
all individuals: 4843
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variant carriers: 0

GenotypeQuality
all individuals: 12469
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 3252
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5121
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4289
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.157e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.92e0

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.039e0

DP
type: SiteQuality
SIO_000300: 2.271018e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.813e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3255
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 12477
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 4843
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variant carriers: 0

GenotypeQuality
all individuals: 5120
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6376
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GenotypeQuality
all individuals: 2799
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21487
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.943e0

QD
type: SiteQuality
SIO_000300: 1.075e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.27117e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.237e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 5115
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3253
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4288
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

DP
type: SiteQuality
SIO_000300: 2.271445e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

FS
type: SiteQuality
SIO_000300: 2.299e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.232e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 12487
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5115
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3253
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2799
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.271445e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.232e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

FS
type: SiteQuality
SIO_000300: 2.299e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
all individuals: 4844
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5116
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.88e-1

FS
type: SiteQuality
SIO_000300: 8.27e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

DP
type: SiteQuality
SIO_000300: 2.271354e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6376
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 4287
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3255
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 21487
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2797
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.994305409860632e-5
allele num: 66730
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Other
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East Asian
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ReadPosRankSum
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FS
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DP
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MQ
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66730
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African
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allele num: 10402
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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Other
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South Asian
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African
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European (Finnish)
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele count: 0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
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FS
type: SiteQuality
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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East Asian
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European (Non-Finnish)
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allele num: 66732
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South Asian
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QD
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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East Asian
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European (Non-Finnish)
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Latino
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allele num: 11574
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South Asian
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DP
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FS
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MQRankSum
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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FS
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VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Other
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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DP
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MQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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QD
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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VQSLOD
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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Other
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African
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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East Asian
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South Asian
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Other
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DP
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ClippingRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Other
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African
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European (Non-Finnish)
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Latino
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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African
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South Asian
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MQRankSum
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ClippingRankSum
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DP
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QD
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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Latino
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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African
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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VQSLOD
type: SiteQuality
SIO_000300: 4.06e-1

QD
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SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 2.269317e6

ReadPosRankSum
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SIO_000300: 3.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.000390050706592e-5
allele num: 66658
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
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Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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MQ
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
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DP
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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SIO_000300: 2.13e0

QD
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VQSLOD
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SIO_000300: 5.07e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.500240038406145e-4
allele num: 66656
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.47e-1

InbreedingCoeff
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FS
type: SiteQuality
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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SIO_000300: 5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.501260352898812e-5
allele num: 66648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.267503e6

BaseQRankSum
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SIO_000300: -3.173e0

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 6.38e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
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DP
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.501935832407936e-5
allele num: 66638
num of homozygotes: 0

South Asian
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allele num: 16504
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8642
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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East Asian
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African
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allele count: 150
allele frequency: 1.448435689455388e-2
allele num: 10356
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European (Non-Finnish)
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allele count: 9
allele frequency: 1.351026780353068e-4
allele num: 66616
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Latino
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allele frequency: 7.786814327738363e-4
allele num: 11558
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Other
type: Population
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allele num: 902
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ClippingRankSum
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FS
type: SiteQuality
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DP
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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Other
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Latino
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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ReadPosRankSum
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DP
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FS
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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SIO_000300: -1.055e0

DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66586
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South Asian
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allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.157675387821255e-3
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.93e0

MQRankSum
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DP
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FS
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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DP
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BaseQRankSum
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 2
allele frequency: 1.933114247052001e-4
allele num: 10346
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

DP
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SIO_000300: 2.263477e6

ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.332e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.883e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

ClippingRankSum
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SIO_000300: 1.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Other
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele frequency: 6.062810719049351e-5
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European (Non-Finnish)
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allele frequency: 1.503488092374308e-5
allele num: 66512
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East Asian
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African
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allele frequency: 0.0e0
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Latino
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Other
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

Latino
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allele num: 11544
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Other
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European (Finnish)
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African
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East Asian
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South Asian
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European (Non-Finnish)
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allele frequency: 1.052536613237903e-4
allele num: 66506
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FS
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MQRankSum
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DP
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QD
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 479
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.256711e6

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 2.577e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505208019748329e-5
allele num: 66436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 2.524e0

DP
type: SiteQuality
SIO_000300: 2.256057e6

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

QD
type: SiteQuality
SIO_000300: 1.207e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.666e0

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -2.242e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 8.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.785e1

DP
type: SiteQuality
SIO_000300: 2.253716e6

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.785e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.666e0

FS
type: SiteQuality
SIO_000300: 8.83e-1

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.253716e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.242e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 80

GenotypeQuality
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 2
allele frequency: 2.237136465324385e-3
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.891807744697412e-4
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.471017007983339e-4
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 1.069405952524401e-3
allele num: 66392
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 2.252735e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

FS
type: SiteQuality
SIO_000300: 2.822e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736412571627018e-4
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506432466632521e-5
allele num: 66382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.617000000000001e0

QD
type: SiteQuality
SIO_000300: 9.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.416e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 2.249654e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.252e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.24883e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.951e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
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African
type: Population
allele count: 8
allele frequency: 7.792713812585232e-4
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.244774e6

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.286e0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5960
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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East Asian
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allele frequency: 1.163061177017911e-4
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South Asian
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allele frequency: 0.0e0
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.525432933083932e-5
allele num: 66292
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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DP
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.510756586898719e-5
allele num: 66192
num of homozygotes: 0

South Asian
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QD
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MQ
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.511578692786746e-5
allele num: 66156
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 11480
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African
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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Latino
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Other
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South Asian
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DP
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FS
type: SiteQuality
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 65688
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African
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Other
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European (Finnish)
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East Asian
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Latino
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South Asian
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Other
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African
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East Asian
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European (Finnish)
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InbreedingCoeff
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FS
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MQ
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DP
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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QD
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SIO_000300: 1.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.671e0

DP
type: SiteQuality
SIO_000300: 1.649394e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.039790862388668e-5
allele num: 65794
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 14342
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.003e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.65041e6

QD
type: SiteQuality
SIO_000300: 1.712e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65794
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 2.769124264451367e-3
allele num: 11556
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.003e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

QD
type: SiteQuality
SIO_000300: 1.712e1

DP
type: SiteQuality
SIO_000300: 1.65041e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -1.541e0

ClippingRankSum
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SIO_000300: -1.952e0

QD
type: SiteQuality
SIO_000300: 1.196e1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

DP
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SIO_000300: 1.66223e6

MQ
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14668
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.032968366139941e-5
allele num: 65942
num of homozygotes: 1

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -2.796e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 3.202e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ClippingRankSum
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SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.664105e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele count: 1
allele frequency: 6.625149065853981e-5
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
type: SiteQuality
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