http://identifiers.org/exac.variant/8-3474343-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3474343
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3474343
    reference: chr 8
allele count: 1
allele frequency: 1.028256488298441e-5
allele num: 97252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1010-24T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1010-24T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1010-24T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1010-24T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1010-24T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1010-24T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1010-24T>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4998
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/8-3474344-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3474344
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3474344
    reference: chr 8
allele count: 1
allele frequency: 1.027010372804765e-5
allele num: 97370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1010-25T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1010-25T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1010-25T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1010-25T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1010-25T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1010-25T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1010-25T>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5003
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

8-3474349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3474349
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3474349
    reference: chr 8
allele count: 1
allele frequency: 1.056144649571205e-5
allele num: 94684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1010-30G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1010-30G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1010-30G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1010-30G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1010-30G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1010-30G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1010-30G>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5983
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

8-3474352-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3474352
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3474352
    reference: chr 8
allele count: 5
allele frequency: 5.377153549996774e-5
allele num: 92986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1010-33A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1010-33A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1010-33A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1010-33A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1010-33A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1010-33A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1010-33A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5412
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6488
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

8-3474354-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3474354
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3474354
    reference: chr 8
allele count: 1
allele frequency: 1.089965775074663e-5
allele num: 91746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1010-35A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1010-35A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1010-35A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1010-35A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1010-35A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1010-35A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1010-35A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6711
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

8-3474356-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3474356
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3474356
    reference: chr 8
allele count: 1
allele frequency: 1.109336173233937e-5
allele num: 90144
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1010-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1010-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1010-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1010-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1010-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1010-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1010-37C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3754
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22362
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5527
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

8-3474357-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3474357
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3474357
    reference: chr 8
allele count: 2
allele frequency: 2.232392008036611e-5
allele num: 89590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1010-38A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1010-38A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1010-38A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1010-38A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1010-38A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1010-38A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1010-38A>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23056
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5556
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6974
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ

8-3474365-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3474365
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3474365
    reference: chr 8
allele count: 9
allele frequency: 1.148164212997219e-4
allele num: 78386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1010-46C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1010-46C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1010-46C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1010-46C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1010-46C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1010-46C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1010-46C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6940
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

8-3565888-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565888
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565888
    reference: chr 8
allele count: 2
allele frequency: 1.677205105412341e-5
allele num: 119246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+48A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+48A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+48A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+48A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+48A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+48A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+48A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+48A>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

8-3565888-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565888
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565888
    reference: chr 8
allele count: 1
allele frequency: 8.386025527061704e-6
allele num: 119246
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+48A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+48A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+48A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+48A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+48A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+48A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+48A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+48A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9840
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

8-3565889-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565889
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565889
    reference: chr 8
allele count: 1
allele frequency: 8.391514500537057e-6
allele num: 119168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+47C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+47C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+47C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+47C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+47C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+47C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+47C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+47C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9835
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

8-3565892-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565892
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565892
    reference: chr 8
allele count: 1
allele frequency: 8.38447865311735e-6
allele num: 119268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+44A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14396
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9839
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-3565893-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565893
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565893
    reference: chr 8
allele count: 59
allele frequency: 4.946344735077129e-4
allele num: 119280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+43T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+43T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+43T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+43T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+43T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+43T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+43T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+43T>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14013
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8209
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14708
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

8-3565894-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565894
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565894
    reference: chr 8
allele count: 3
allele frequency: 2.516440746208563e-5
allele num: 119216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+42G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+42G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+42G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+42G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+42G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+42G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+42G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+42G>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5503
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14118
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

8-3565899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565899
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565899
    reference: chr 8
allele count: 1
allele frequency: 8.376612497905846e-6
allele num: 119380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+37C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16753
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21452
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

8-3565899-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565899
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565899
    reference: chr 8
allele count: 1
allele frequency: 8.376612497905846e-6
allele num: 119380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+37C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9863
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

8-3565900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565900
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565900
    reference: chr 8
allele count: 22607
allele frequency: 1.896115006542087e-1
allele num: 119228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+36G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+36G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+36G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+36G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+36G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+36G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+36G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+36G>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.25e1
  variant carriers: 426
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 14093
  bin: 2.25e1
  variant carriers: 2929
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 5.25e1
  variant carriers: 675
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 9.75e1
  variant carriers: 852
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 1.75e1
  variant carriers: 1543
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 3.75e1
  variant carriers: 2640
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 14159
  bin: 2.75e1
  variant carriers: 3650
genotype depth: GenotypeDepth
  all individuals: 9026
  bin: 3.25e1
  variant carriers: 3373
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.75e1
  variant carriers: 1099
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.25e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.75e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.25e1
  variant carriers: 1769
genotype quality: GenotypeQuality
  all individuals: 4727
  bin: 6.75e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 5.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 7.75e1
  variant carriers: 150
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 9.25e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 8.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 3.75e1
  variant carriers: 48
num of homozygotes: 2208
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

8-3565901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565901
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565901
    reference: chr 8
allele count: 2
allele frequency: 1.671765551599044e-5
allele num: 119634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+35C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+35C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+35C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+35C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+35C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+35C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+35C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+35C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

8-3565901-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565901
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565901
    reference: chr 8
allele count: 1
allele frequency: 8.358827757995218e-6
allele num: 119634
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+35C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+35C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+35C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+35C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+35C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+35C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+35C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+35C>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8041
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

8-3565904-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565904
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565904
    reference: chr 8
allele count: 16
allele frequency: 1.33469026843958e-4
allele num: 119878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+32A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+32A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+32A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+32A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+32A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+32A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+32A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+32A>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17302
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

8-3565904-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565904
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565904
    reference: chr 8
allele count: 1
allele frequency: 8.341814177747376e-6
allele num: 119878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+32A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8046
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

8-3565905-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565905
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565905
    reference: chr 8
allele count: 5
allele frequency: 4.172299270682088e-5
allele num: 119838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+31G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+31G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+31G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+31G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+31G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+31G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+31G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+31G>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17399
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

8-3565907-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565907
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565907
    reference: chr 8
allele count: 1
allele frequency: 8.337363058811759e-6
allele num: 119942
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+29T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+29T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+29T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+29T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+29T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+29T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+29T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+29T>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17524
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

8-3565908-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565908
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565908
    reference: chr 8
allele count: 2
allele frequency: 1.66725020423815e-5
allele num: 119958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+28A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+28A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+28A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+28A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+28A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+28A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+28A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+28A>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD

8-3565908-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565908
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565908
    reference: chr 8
allele count: 1
allele frequency: 8.33625102119075e-6
allele num: 119958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+28A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+28A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+28A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+28A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+28A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+28A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+28A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+28A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27550
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

8-3565914-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565914
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565914
    reference: chr 8
allele count: 2
allele frequency: 1.665306666222585e-5
allele num: 120098
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+22C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+22C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+22C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+22C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+22C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+22C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+22C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+22C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18029
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

8-3565914-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565914
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565914
    reference: chr 8
allele count: 3
allele frequency: 2.497959999333877e-5
allele num: 120098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+22C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+22C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+22C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+22C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+22C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+22C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+22C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+22C>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9414
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

8-3565916-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565916
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565916
    reference: chr 8
allele count: 9
allele frequency: 7.49126019643749e-5
allele num: 120140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+20A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+20A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+20A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+20A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+20A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+20A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+20A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+20A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18132
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29797
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

8-3565918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565918
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565918
    reference: chr 8
allele count: 7
allele frequency: 5.824014909478168e-5
allele num: 120192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+18C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+18C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+18C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+18C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+18C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+18C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+18C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+18C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17533
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3695
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

8-3565918-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565918
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565918
    reference: chr 8
allele count: 1
allele frequency: 8.320021299254527e-6
allele num: 120192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+18C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+18C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+18C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+18C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+18C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+18C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+18C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+18C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8040
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

8-3565923-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565923
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565923
    reference: chr 8
allele count: 1
allele frequency: 8.31255195344971e-6
allele num: 120300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+13C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+13C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+13C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+13C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+13C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+13C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+13C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+13C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18494
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8036
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

8-3565923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565923
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565923
    reference: chr 8
allele count: 2
allele frequency: 1.662510390689942e-5
allele num: 120300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1009+13C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1009+13C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.83+13C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1009+13C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1009+13C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1009+13C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1009+13C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1009+13C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

8-3565940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565940
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565940
    reference: chr 8
allele count: 5
allele frequency: 4.147794203042821e-5
allele num: 120546
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1005T>C
  hgvsp: ENST00000602557.1:c.1005T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1005T>C
  hgvsp: ENST00000520002.1:c.1005T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1005T>C
  hgvsp: ENST00000400186.3:c.1005T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1005T>C
  hgvsp: ENST00000539096.1:c.1005T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1005T>C
  hgvsp: ENST00000602723.1:c.1005T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.79T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1005T>C
  hgvsp: ENST00000537824.1:c.1005T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1005T>C
  hgvsp: ENST00000542608.1:c.1005T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18997
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser335Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

8-3565941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565941
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565941
    reference: chr 8
allele count: 2
allele frequency: 1.659062629614268e-5
allele num: 120550
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1004C>T
  hgvsp: ENSP00000441462.1:p.Ser335Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1004C>T
  hgvsp: ENSP00000473617.1:p.Ser335Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1004C>T
  hgvsp: ENSP00000446243.1:p.Ser335Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.78C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1004C>T
  hgvsp: ENSP00000430733.1:p.Ser335Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1004C>T
  hgvsp: ENSP00000473359.1:p.Ser335Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1004C>T
  hgvsp: ENSP00000441675.1:p.Ser335Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1004C>T
  hgvsp: ENSP00000383047.3:p.Ser335Phe
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser335Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

8-3565943-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565943
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565942
    reference: chr 8
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.1001delA
  hgvsp: ENSP00000473617.1:p.Asn334ThrfsTer4
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.1001delA
  hgvsp: ENSP00000441675.1:p.Asn334ThrfsTer4
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.1001delA
  hgvsp: ENSP00000446243.1:p.Asn334ThrfsTer4
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.1001delA
  hgvsp: ENSP00000473359.1:p.Asn334ThrfsTer4
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.1001delA
  hgvsp: ENSP00000430733.1:p.Asn334ThrfsTer4
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.1001delA
  hgvsp: ENSP00000441462.1:p.Asn334ThrfsTer4
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.75delA
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.1001delA
  hgvsp: ENSP00000383047.3:p.Asn334ThrfsTer4
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8037
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn334ThrfsTer4
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: GT
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-3565948-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565948
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565948
    reference: chr 8
allele count: 1
allele frequency: 8.293799555452344e-6
allele num: 120572
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.997A>G
  hgvsp: ENSP00000441462.1:p.Lys333Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.997A>G
  hgvsp: ENSP00000446243.1:p.Lys333Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.997A>G
  hgvsp: ENSP00000430733.1:p.Lys333Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.997A>G
  hgvsp: ENSP00000473617.1:p.Lys333Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.997A>G
  hgvsp: ENSP00000473359.1:p.Lys333Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.997A>G
  hgvsp: ENSP00000441675.1:p.Lys333Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.997A>G
  hgvsp: ENSP00000383047.3:p.Lys333Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.71A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys333Glu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

8-3565950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565950
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565950
    reference: chr 8
allele count: 3
allele frequency: 2.487603442843165e-5
allele num: 120598
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.995A>G
  hgvsp: ENSP00000473359.1:p.His332Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.995A>G
  hgvsp: ENSP00000446243.1:p.His332Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.69A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.995A>G
  hgvsp: ENSP00000441462.1:p.His332Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.995A>G
  hgvsp: ENSP00000473617.1:p.His332Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.995A>G
  hgvsp: ENSP00000383047.3:p.His332Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.995A>G
  hgvsp: ENSP00000441675.1:p.His332Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.995A>G
  hgvsp: ENSP00000430733.1:p.His332Arg
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7732
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His332Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

8-3565956-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565956
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565956
    reference: chr 8
allele count: 166
allele frequency: 1.398907840625632e-3
allele num: 118664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.989G>A
  hgvsp: ENSP00000473359.1:p.Gly330Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.989G>A
  hgvsp: ENSP00000430733.1:p.Gly330Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.989G>A
  hgvsp: ENSP00000383047.3:p.Gly330Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.989G>A
  hgvsp: ENSP00000446243.1:p.Gly330Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.63G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.989G>A
  hgvsp: ENSP00000441462.1:p.Gly330Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.989G>A
  hgvsp: ENSP00000473617.1:p.Gly330Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.989G>A
  hgvsp: ENSP00000441675.1:p.Gly330Glu
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 19150
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9477
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17933
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 22
hgvs: p.Gly330Glu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

8-3565957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565957
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565957
    reference: chr 8
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.988G>A
  hgvsp: ENSP00000441675.1:p.Gly330Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.988G>A
  hgvsp: ENSP00000383047.3:p.Gly330Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.988G>A
  hgvsp: ENSP00000430733.1:p.Gly330Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.988G>A
  hgvsp: ENSP00000446243.1:p.Gly330Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.988G>A
  hgvsp: ENSP00000473617.1:p.Gly330Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.62G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.988G>A
  hgvsp: ENSP00000441462.1:p.Gly330Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.988G>A
  hgvsp: ENSP00000473359.1:p.Gly330Arg
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly330Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

8-3565958-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565958
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565958
    reference: chr 8
allele count: 10
allele frequency: 8.291323958609711e-5
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.987T>C
  hgvsp: ENST00000542608.1:c.987T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.987T>C
  hgvsp: ENST00000539096.1:c.987T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.987T>C
  hgvsp: ENST00000520002.1:c.987T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.987T>C
  hgvsp: ENST00000400186.3:c.987T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.987T>C
  hgvsp: ENST00000537824.1:c.987T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.61T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.987T>C
  hgvsp: ENST00000602723.1:c.987T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.987T>C
  hgvsp: ENST00000602557.1:c.987T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18089
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp329Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

8-3565959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565959
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565959
    reference: chr 8
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.986A>G
  hgvsp: ENSP00000441462.1:p.Asp329Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.986A>G
  hgvsp: ENSP00000430733.1:p.Asp329Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.60A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.986A>G
  hgvsp: ENSP00000473617.1:p.Asp329Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.986A>G
  hgvsp: ENSP00000383047.3:p.Asp329Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.986A>G
  hgvsp: ENSP00000446243.1:p.Asp329Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.986A>G
  hgvsp: ENSP00000441675.1:p.Asp329Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.986A>G
  hgvsp: ENSP00000473359.1:p.Asp329Gly
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp329Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

8-3565959-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565959
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565959
    reference: chr 8
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.986A>T
  hgvsp: ENSP00000473617.1:p.Asp329Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.986A>T
  hgvsp: ENSP00000430733.1:p.Asp329Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.986A>T
  hgvsp: ENSP00000383047.3:p.Asp329Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.986A>T
  hgvsp: ENSP00000446243.1:p.Asp329Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.60A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.986A>T
  hgvsp: ENSP00000441675.1:p.Asp329Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.986A>T
  hgvsp: ENSP00000441462.1:p.Asp329Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.986A>T
  hgvsp: ENSP00000473359.1:p.Asp329Val
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7436
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp329Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

8-3565960-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565960
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565960
    reference: chr 8
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.985G>C
  hgvsp: ENSP00000446243.1:p.Asp329His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.985G>C
  hgvsp: ENSP00000441462.1:p.Asp329His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.985G>C
  hgvsp: ENSP00000473617.1:p.Asp329His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.985G>C
  hgvsp: ENSP00000473359.1:p.Asp329His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.985G>C
  hgvsp: ENSP00000441675.1:p.Asp329His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.985G>C
  hgvsp: ENSP00000383047.3:p.Asp329His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.59G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.985G>C
  hgvsp: ENSP00000430733.1:p.Asp329His
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp329His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

8-3565960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565960
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565960
    reference: chr 8
allele count: 7
allele frequency: 5.80248346292213e-5
allele num: 120638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.985G>A
  hgvsp: ENSP00000473359.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.985G>A
  hgvsp: ENSP00000473617.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.985G>A
  hgvsp: ENSP00000441462.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.985G>A
  hgvsp: ENSP00000383047.3:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.985G>A
  hgvsp: ENSP00000441675.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.59G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.985G>A
  hgvsp: ENSP00000430733.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.985G>A
  hgvsp: ENSP00000446243.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp329Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

8-3565961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565961
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565961
    reference: chr 8
allele count: 3
allele frequency: 2.486696175461282e-5
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.984G>A
  hgvsp: ENST00000602723.1:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.984G>A
  hgvsp: ENST00000539096.1:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.58G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.984G>A
  hgvsp: ENST00000542608.1:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.984G>A
  hgvsp: ENST00000400186.3:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.984G>A
  hgvsp: ENST00000537824.1:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.984G>A
  hgvsp: ENST00000520002.1:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.984G>A
  hgvsp: ENST00000602557.1:c.984G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9708
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys328Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

8-3565967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565967
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565967
    reference: chr 8
allele count: 1
allele frequency: 8.288025460814215e-6
allele num: 120656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.978C>T
  hgvsp: ENST00000602557.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.52C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.978C>T
  hgvsp: ENST00000520002.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.978C>T
  hgvsp: ENST00000542608.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.978C>T
  hgvsp: ENST00000539096.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.978C>T
  hgvsp: ENST00000602723.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.978C>T
  hgvsp: ENST00000400186.3:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.978C>T
  hgvsp: ENST00000537824.1:c.978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro326Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

8-3565970-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565970
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565970
    reference: chr 8
allele count: 2
allele frequency: 1.657687525901368e-5
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.975G>A
  hgvsp: ENST00000539096.1:c.975G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.975G>A
  hgvsp: ENST00000602723.1:c.975G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.975G>A
  hgvsp: ENST00000520002.1:c.975G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.49G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.975G>A
  hgvsp: ENST00000400186.3:c.975G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.975G>A
  hgvsp: ENST00000542608.1:c.975G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.975G>A
  hgvsp: ENST00000537824.1:c.975G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.975G>A
  hgvsp: ENST00000602557.1:c.975G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu325Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-3565973-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565973
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565973
    reference: chr 8
allele count: 2
allele frequency: 1.657632569164719e-5
allele num: 120654
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.972G>T
  hgvsp: ENSP00000441462.1:p.Met324Ile
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.972G>T
  hgvsp: ENSP00000430733.1:p.Met324Ile
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.972G>T
  hgvsp: ENSP00000383047.3:p.Met324Ile
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.972G>T
  hgvsp: ENSP00000473359.1:p.Met324Ile
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.972G>T
  hgvsp: ENSP00000473617.1:p.Met324Ile
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.972G>T
  hgvsp: ENSP00000446243.1:p.Met324Ile
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.972G>T
  hgvsp: ENSP00000441675.1:p.Met324Ile
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.46G>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7429
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met324Ile
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

8-3565979-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565979
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565979
    reference: chr 8
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.966C>G
  hgvsp: ENST00000602723.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.966C>G
  hgvsp: ENST00000539096.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.966C>G
  hgvsp: ENST00000520002.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.966C>G
  hgvsp: ENST00000542608.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.40C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.966C>G
  hgvsp: ENST00000602557.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.966C>G
  hgvsp: ENST00000400186.3:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.966C>G
  hgvsp: ENST00000537824.1:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val322Val
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/8-3565994-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565994
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565994
    reference: chr 8
allele count: 2
allele frequency: 1.658374792703151e-5
allele num: 120600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.951G>T
  hgvsp: ENSP00000383047.3:p.Leu317Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.951G>T
  hgvsp: ENSP00000430733.1:p.Leu317Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.951G>T
  hgvsp: ENSP00000473359.1:p.Leu317Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.25G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.951G>T
  hgvsp: ENSP00000441462.1:p.Leu317Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.951G>T
  hgvsp: ENSP00000446243.1:p.Leu317Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.951G>T
  hgvsp: ENSP00000441675.1:p.Leu317Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.951G>T
  hgvsp: ENSP00000473617.1:p.Leu317Phe
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu317Phe
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

8-3565994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565994
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565994
    reference: chr 8
allele count: 1
allele frequency: 8.291873963515755e-6
allele num: 120600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.951G>A
  hgvsp: ENST00000602723.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.25G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.951G>A
  hgvsp: ENST00000542608.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.951G>A
  hgvsp: ENST00000400186.3:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.951G>A
  hgvsp: ENST00000537824.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.951G>A
  hgvsp: ENST00000539096.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.951G>A
  hgvsp: ENST00000520002.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.951G>A
  hgvsp: ENST00000602557.1:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu317Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

8-3565998-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3565998
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3565998
    reference: chr 8
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.947A>C
  hgvsp: ENSP00000383047.3:p.Glu316Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.21A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.947A>C
  hgvsp: ENSP00000441675.1:p.Glu316Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.947A>C
  hgvsp: ENSP00000430733.1:p.Glu316Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.947A>C
  hgvsp: ENSP00000473617.1:p.Glu316Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.947A>C
  hgvsp: ENSP00000473359.1:p.Glu316Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.947A>C
  hgvsp: ENSP00000446243.1:p.Glu316Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.947A>C
  hgvsp: ENSP00000441462.1:p.Glu316Ala
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu316Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/8-3566000-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566000
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566000
    reference: chr 8
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.945T>G
  hgvsp: ENSP00000441675.1:p.Ile315Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.19T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.945T>G
  hgvsp: ENSP00000430733.1:p.Ile315Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.945T>G
  hgvsp: ENSP00000383047.3:p.Ile315Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.945T>G
  hgvsp: ENSP00000446243.1:p.Ile315Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.945T>G
  hgvsp: ENSP00000441462.1:p.Ile315Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.945T>G
  hgvsp: ENSP00000473617.1:p.Ile315Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.945T>G
  hgvsp: ENSP00000473359.1:p.Ile315Met
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7928
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile315Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

8-3566001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566001
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566001
    reference: chr 8
allele count: 10
allele frequency: 8.29324929507381e-5
allele num: 120580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.944T>C
  hgvsp: ENSP00000430733.1:p.Ile315Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.944T>C
  hgvsp: ENSP00000441462.1:p.Ile315Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.944T>C
  hgvsp: ENSP00000383047.3:p.Ile315Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.944T>C
  hgvsp: ENSP00000441675.1:p.Ile315Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.944T>C
  hgvsp: ENSP00000473359.1:p.Ile315Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.18T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.944T>C
  hgvsp: ENSP00000446243.1:p.Ile315Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.944T>C
  hgvsp: ENSP00000473617.1:p.Ile315Thr
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7429
  bin: 9.75e1
  variant carriers: 10
hgvs: p.Ile315Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

8-3566003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566003
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566003
    reference: chr 8
allele count: 2
allele frequency: 1.65892501658925e-5
allele num: 120560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.942G>A
  hgvsp: ENST00000539096.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.942G>A
  hgvsp: ENST00000542608.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.942G>A
  hgvsp: ENST00000537824.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.942G>A
  hgvsp: ENST00000400186.3:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.942G>A
  hgvsp: ENST00000602557.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.942G>A
  hgvsp: ENST00000602723.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.942G>A
  hgvsp: ENST00000520002.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.16G>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32140
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala314Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

8-3566004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566004
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566004
    reference: chr 8
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.941C>T
  hgvsp: ENSP00000430733.1:p.Ala314Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.941C>T
  hgvsp: ENSP00000446243.1:p.Ala314Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.941C>T
  hgvsp: ENSP00000383047.3:p.Ala314Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.941C>T
  hgvsp: ENSP00000441675.1:p.Ala314Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.941C>T
  hgvsp: ENSP00000473617.1:p.Ala314Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.941C>T
  hgvsp: ENSP00000441462.1:p.Ala314Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.941C>T
  hgvsp: ENSP00000473359.1:p.Ala314Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.15C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17633
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala314Val
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-3566005-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566005
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566005
    reference: chr 8
allele count: 2
allele frequency: 1.659090154959021e-5
allele num: 120548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.940G>T
  hgvsp: ENSP00000430733.1:p.Ala314Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.940G>T
  hgvsp: ENSP00000441675.1:p.Ala314Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.940G>T
  hgvsp: ENSP00000383047.3:p.Ala314Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.940G>T
  hgvsp: ENSP00000473617.1:p.Ala314Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.940G>T
  hgvsp: ENSP00000446243.1:p.Ala314Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.940G>T
  hgvsp: ENSP00000441462.1:p.Ala314Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.940G>T
  hgvsp: ENSP00000473359.1:p.Ala314Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.14G>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala314Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

8-3566010-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566010
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566010
    reference: chr 8
allele count: 1
allele frequency: 8.299995020002988e-6
allele num: 120482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.935A>C
  hgvsp: ENSP00000473617.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.935A>C
  hgvsp: ENSP00000446243.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.935A>C
  hgvsp: ENSP00000441675.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.935A>C
  hgvsp: ENSP00000441462.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.935A>C
  hgvsp: ENSP00000430733.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.935A>C
  hgvsp: ENSP00000473359.1:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.935A>C
  hgvsp: ENSP00000383047.3:p.Lys312Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.9A>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys312Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

8-3566012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566012
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566012
    reference: chr 8
allele count: 4
allele frequency: 3.321210913499062e-5
allele num: 120438
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.933G>A
  hgvsp: ENST00000537824.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.933G>A
  hgvsp: ENST00000520002.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.933G>A
  hgvsp: ENST00000539096.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.7G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.933G>A
  hgvsp: ENST00000542608.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.933G>A
  hgvsp: ENST00000602557.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.933G>A
  hgvsp: ENST00000400186.3:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.933G>A
  hgvsp: ENST00000602723.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7843
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.25e1
  variant carriers: 0
hgvs: c.933G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

8-3566015-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566015
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566015
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 120372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-2A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.4A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-2A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-2A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-2A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-2A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-2A>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-2A>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7745
  bin: 6.75e1
  variant carriers: 0
hgvs: c.932-2A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-3566016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566016
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566016
    reference: chr 8
allele count: 1
allele frequency: 8.30813199960121e-6
allele num: 120364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.3C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-3C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-3C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-3C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-3C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-3C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-3C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-3C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: c.932-3C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

8-3566017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566017
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566017
    reference: chr 8
allele count: 16
allele frequency: 1.329610424145725e-4
allele num: 120336
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-4C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-4C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000518151
  gene symbol: CSMD1
  hgvsc: ENST00000518151.1:n.2C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-4C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-4C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-4C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-4C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-4C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17012
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19448
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
hgvs: c.932-4C>T
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

8-3566019-AGAAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566019
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566014
    reference: chr 8
allele count: 2
allele frequency: 1.662316937347275e-5
allele num: 120314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-11_932-7delGTTTC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-11_932-7delGTTTC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-11_932-7delGTTTC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-11_932-7delGTTTC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-11_932-7delGTTTC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-11_932-7delGTTTC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-11_932-7delGTTTC
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19420
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7411
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: c.932-11_932-7delGTTTC
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: AGAAAC
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

8-3566020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566020
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566020
    reference: chr 8
allele count: 1106
allele frequency: 9.218971409519047e-3
allele num: 119970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-7C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 19129
  bin: 2.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 4.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16530
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 3.25e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
hgvs: c.932-7C>T
num of homozygotes: 9
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/8-3566021-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566021
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566021
    reference: chr 8
allele count: 1
allele frequency: 8.323068215867098e-6
allele num: 120148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-8T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-8T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-8T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-8T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-8T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-8T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-8T>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
hgvs: c.932-8T>G
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

8-3566021-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566021
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566021
    reference: chr 8
allele count: 3
allele frequency: 2.496920464760129e-5
allele num: 120148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-8T>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
hgvs: c.932-8T>C
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

8-3566021-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566021
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566021
    reference: chr 8
allele count: 1
allele frequency: 8.323068215867098e-6
allele num: 120148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-8T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-8T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-8T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-8T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-8T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-8T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-8T>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: c.932-8T>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

8-3566022-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566022
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566022
    reference: chr 8
allele count: 1
allele frequency: 8.323068215867098e-6
allele num: 120148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-9T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-9T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-9T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-9T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-9T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-9T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-9T>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16537
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7304
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/8-3566023-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566023
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566022
    reference: chr 8
allele count: 2
allele frequency: 1.664475107774763e-5
allele num: 120158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-11delG
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-11delG
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-11delG
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-11delG
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-11delG
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-11delG
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-11delG
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30783
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: AC
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-3566024-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566024
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566024
    reference: chr 8
allele count: 6
allele frequency: 5.003168673493213e-5
allele num: 119924
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-11G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-11G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-11G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-11G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-11G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-11G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-11G>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16247
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7280
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-3566025-AAAACC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3566025
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 3566020
    reference: chr 8
allele count: 2
allele frequency: 1.664779916095092e-5
allele num: 120136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.932-17_932-13delGGTTT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441675
  ensembl transcript: ENST00000539096
  gene symbol: CSMD1
  hgvsc: ENST00000539096.1:c.932-17_932-13delGGTTT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.932-17_932-13delGGTTT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.932-17_932-13delGGTTT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.932-17_932-13delGGTTT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.932-17_932-13delGGTTT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.932-17_932-13delGGTTT
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: AAAACC

GenotypeQuality
all individuals: 442
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.418397626112759e-5
allele num: 13480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53802
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8670
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.121091e6

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.0e-1

InbreedingCoeff
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SIO_000300: -3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.856251856251856e-5
allele num: 53872
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.289e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

VQSLOD
type: SiteQuality
SIO_000300: -5.845e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.120199e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5684
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13246
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.913362926679933e-5
allele num: 52264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.565e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

DP
type: SiteQuality
SIO_000300: 1.067694e6

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13054
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 9.739753779024466e-5
allele num: 51336
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

FS
type: SiteQuality
SIO_000300: 9.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

QD
type: SiteQuality
SIO_000300: 1.416e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

DP
type: SiteQuality
SIO_000300: 1.040693e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.975737938119888e-5
allele num: 50614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.067e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.02689e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 5.751e0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 2418
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 774
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.35685210312076e-4
allele num: 7370
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.013661e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.05449237755433e-5
allele num: 49328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7334
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.683e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 2.105657199008001e-4
allele num: 42742
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5064
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 4.377e0

MQRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.034625072072346e-5
allele num: 65906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517312536036173e-5
allele num: 65906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3531
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518649009840846e-5
allele num: 65848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.68e0

FS
type: SiteQuality
SIO_000300: 4.927e0

DP
type: SiteQuality
SIO_000300: 1.864561e6

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17451
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517266492686776e-5
allele num: 65908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

FS
type: SiteQuality
SIO_000300: 2.342e0

QD
type: SiteQuality
SIO_000300: 1.487e1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.873362e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 3021
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3889
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 18396
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.749475157452764e-4
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 53
allele frequency: 8.041268396297983e-4
allele num: 65910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.133085348212441e-4
allele num: 9678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.87673e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

GenotypeQuality
all individuals: 1372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6753
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9838
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19310
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.103662321539416e-4
allele num: 9666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 1.345e1

VQSLOD
type: SiteQuality
SIO_000300: -3.046e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 1.114e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 1.880963e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

GenotypeQuality
all individuals: 739
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3988
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9863
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 975
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515794579518584e-5
allele num: 65972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.89929e6

FS
type: SiteQuality
SIO_000300: 1.225e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e-1

QD
type: SiteQuality
SIO_000300: 1.112e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

GenotypeQuality
all individuals: 1373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3988
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179523472517103e-4
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.225e0

QD
type: SiteQuality
SIO_000300: 1.112e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

DP
type: SiteQuality
SIO_000300: 1.89929e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 526
bin: 2.75e1
variant carriers: 25

GenotypeQuality
all individuals: 728
bin: 2.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1901
bin: 7.25e1
variant carriers: 106

GenotypeQuality
all individuals: 1085
bin: 4.75e1
variant carriers: 93

GenotypeQuality
all individuals: 16338
bin: 6.25e1
variant carriers: 120

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 20

GenotypeQuality
all individuals: 24029
bin: 9.75e1
variant carriers: 19053

GenotypeQuality
all individuals: 723
bin: 5.25e1
variant carriers: 87

GenotypeQuality
all individuals: 1825
bin: 8.25e1
variant carriers: 163

GenotypeQuality
all individuals: 777
bin: 4.25e1
variant carriers: 53

GenotypeQuality
all individuals: 992
bin: 3.25e1
variant carriers: 43

European (Non-Finnish)
type: Population
allele count: 11294
allele frequency: 1.713964852642122e-1
allele num: 65894
num of homozygotes: 960

European (Finnish)
type: Population
allele count: 806
allele frequency: 1.226788432267884e-1
allele num: 6570
num of homozygotes: 37

South Asian
type: Population
allele count: 4263
allele frequency: 2.606701724348783e-1
allele num: 16354
num of homozygotes: 579

African
type: Population
allele count: 2001
allele frequency: 2.068003307151716e-1
allele num: 9676
num of homozygotes: 199

Other
type: Population
allele count: 171
allele frequency: 1.938775510204082e-1
allele num: 882
num of homozygotes: 17

Latino
type: Population
allele count: 1816
allele frequency: 1.594661046715841e-1
allele num: 11388
num of homozygotes: 127

East Asian
type: Population
allele count: 2256
allele frequency: 2.665406427221172e-1
allele num: 8464
num of homozygotes: 289

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.137e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.48e0

QD
type: SiteQuality
SIO_000300: 1.486e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 2.003736e6

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1400
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8041
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513179796023364e-5
allele num: 66086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.031140441328109e-4
allele num: 9698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

FS
type: SiteQuality
SIO_000300: 1.4608e1

DP
type: SiteQuality
SIO_000300: 1.896527e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.202e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 582
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3750
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513179796023364e-5
allele num: 66086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.202e0

FS
type: SiteQuality
SIO_000300: 1.4608e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

DP
type: SiteQuality
SIO_000300: 1.896527e6

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 1117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8046
bin: 9.75e1
variant carriers: 16

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509753004408479e-5
allele num: 66236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.14968891057704e-4
allele num: 16394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: 6.07e0

DP
type: SiteQuality
SIO_000300: 1.901653e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.446e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
all individuals: 970
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7517
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 1.901653e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
all individuals: 7473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
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variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.551501238446202e-5
allele num: 66212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
SIO_000300: 1.904551e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8034
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02880658436214e-4
allele num: 9720
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

FS
type: SiteQuality
SIO_000300: 2.031e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.193e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

DP
type: SiteQuality
SIO_000300: 1.908363e6

VQSLOD
type: SiteQuality
SIO_000300: -5.552e-1

GenotypeQuality
all individuals: 862
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27550
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 634
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variant carriers: 0

GenotypeQuality
all individuals: 2699
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8036
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 797
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017956843217142e-5
allele num: 66270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.233e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

DP
type: SiteQuality
SIO_000300: 1.910158e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.636e0

QD
type: SiteQuality
SIO_000300: 1.998e1

GenotypeQuality
all individuals: 1292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
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variant carriers: 0

GenotypeQuality
all individuals: 615
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variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8036
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508978421608571e-5
allele num: 66270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.910158e6

FS
type: SiteQuality
SIO_000300: 4.636e0

QD
type: SiteQuality
SIO_000300: 1.998e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.233e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 302
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29240
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8039
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1728
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014408874419726e-5
allele num: 66348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.352e0

FS
type: SiteQuality
SIO_000300: 2.918e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

DP
type: SiteQuality
SIO_000300: 1.92397e6

VQSLOD
type: SiteQuality
SIO_000300: 9.68e-1

QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
all individuals: 2710
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8039
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.521613311629589e-5
allele num: 66348
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.22e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

FS
type: SiteQuality
SIO_000300: 2.918e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.352e0

DP
type: SiteQuality
SIO_000300: 1.92397e6

QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
all individuals: 258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8044
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 60
bin: 7.5e0
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GenotypeQuality
all individuals: 486
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2715
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
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GenotypeQuality
all individuals: 120
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GenotypeQuality
all individuals: 1290
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variant carriers: 0

GenotypeQuality
all individuals: 7635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
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variant carriers: 0

GenotypeQuality
all individuals: 3694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.054534498342874e-4
allele num: 66380
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

FS
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 1.926751e6

GenotypeQuality
all individuals: 2713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8040
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
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GenotypeQuality
all individuals: 2833
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 30037
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 6.155108740254411e-4
allele num: 9748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.930352e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 3.516e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.216e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

GenotypeQuality
all individuals: 436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505933377507379e-5
allele num: 66404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

FS
type: SiteQuality
SIO_000300: 3.516e0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.288e1

DP
type: SiteQuality
SIO_000300: 1.930352e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.216e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7696
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

DP
type: SiteQuality
SIO_000300: 1.936955e6

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 2.913e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 6.31e0

VQSLOD
type: SiteQuality
SIO_000300: -6.671e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

GenotypeQuality
all individuals: 1725
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7696
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8036
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025010250102501e-4
allele num: 9756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: -6.671e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

QD
type: SiteQuality
SIO_000300: 6.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 2.913e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

DP
type: SiteQuality
SIO_000300: 1.936955e6

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8042
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.044153720359771e-4
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.322880371660859e-4
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.039e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 1.947991e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8037
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00147072065312e-5
allele num: 66634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.617e0

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 1.948343e6

QD
type: SiteQuality
SIO_000300: 1.096e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.303e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.028e1

MQRankSum
type: SiteQuality
SIO_000300: -1.856e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 1.067e1

DP
type: SiteQuality
SIO_000300: 1.948948e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
all individuals: 7729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8027
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3701
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

DP
type: SiteQuality
SIO_000300: 1.953717e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.332e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

FS
type: SiteQuality
SIO_000300: 9.250999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

GenotypeQuality
all individuals: 2820
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8027
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3698
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.066230580539657e-4
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.267e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.954294e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.844e0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 3571
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2561
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 31399
bin: 6.25e1
variant carriers: 13

GenotypeQuality
all individuals: 7582
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 223
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 113
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1202
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 174
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1599
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 125
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 7273
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 10

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.264755480607083e-3
allele num: 9488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 80
allele frequency: 1.219437839156149e-3
allele num: 65604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 58
allele frequency: 9.409474367293965e-3
allele num: 6164
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.006071929005138e-4
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 9.195402298850575e-3
allele num: 870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

QD
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.965102e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.126e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.067e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.519e2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e0

FS
type: SiteQuality
SIO_000300: 1.80214e2

GenotypeQuality
all individuals: 1644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7987
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2865
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-1

DP
type: SiteQuality
SIO_000300: 1.93355e6

FS
type: SiteQuality
SIO_000300: 5.023e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.072e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7446
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 7974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32342
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.462004500605851e-4
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.501650363079878e-5
allele num: 66652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

DP
type: SiteQuality
SIO_000300: 1.933775e6

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

FS
type: SiteQuality
SIO_000300: 2.459e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
all individuals: 7436
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3725
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 32416
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variant carriers: 0

GenotypeQuality
all individuals: 2876
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 7992
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variant carriers: 0

GenotypeQuality
all individuals: 1642
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variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 5.05e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 1.933399e6

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

GenotypeQuality
all individuals: 122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 32416
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 5.05e-1

DP
type: SiteQuality
SIO_000300: 1.933399e6

QD
type: SiteQuality
SIO_000300: 1.215e1

GenotypeQuality
all individuals: 1642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2877
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7440
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.349e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 1.93357e6

GenotypeQuality
all individuals: 2640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.638568829593693e-4
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.93357e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.349e0

GenotypeQuality
all individuals: 7434
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 7988
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 115
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GenotypeQuality
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GenotypeQuality
all individuals: 2642
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

FS
type: SiteQuality
SIO_000300: 1.116e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.149e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

DP
type: SiteQuality
SIO_000300: 1.933476e6

QD
type: SiteQuality
SIO_000300: 1.205e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
all individuals: 110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32510
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 2867
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variant carriers: 0

GenotypeQuality
all individuals: 1642
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 7991
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GenotypeQuality
all individuals: 7429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3719
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.834e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e0

DP
type: SiteQuality
SIO_000300: 1.934248e6

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

VQSLOD
type: SiteQuality
SIO_000300: -1.553e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

QD
type: SiteQuality
SIO_000300: 1.066e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.746e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32536
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7430
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.745e0

FS
type: SiteQuality
SIO_000300: 3.807e0

QD
type: SiteQuality
SIO_000300: 4.14e0

VQSLOD
type: SiteQuality
SIO_000300: -2.079e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 1.934242e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.401e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.811e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.7e-3

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.934451e6

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

GenotypeQuality
all individuals: 1246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32462
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7961
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

FS
type: SiteQuality
SIO_000300: 4.831e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

QD
type: SiteQuality
SIO_000300: 7.95e0

VQSLOD
type: SiteQuality
SIO_000300: -9.167999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.934256e6

MQ
type: SiteQuality
SIO_000300: 5.908e1

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7428
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

DP
type: SiteQuality
SIO_000300: 1.933234e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

FS
type: SiteQuality
SIO_000300: 1.153e0

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 9.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.222e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7934
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

DP
type: SiteQuality
SIO_000300: 1.933234e6

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.222e0

QD
type: SiteQuality
SIO_000300: 9.44e0

FS
type: SiteQuality
SIO_000300: 1.153e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7425
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32296
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.932019e6

QD
type: SiteQuality
SIO_000300: 1.225e1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.685e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 1.0678e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32336
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7423
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.931761e6

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2628
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.160092807424594e-3
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

FS
type: SiteQuality
SIO_000300: 2.523e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

QD
type: SiteQuality
SIO_000300: 1.274e1

DP
type: SiteQuality
SIO_000300: 1.93168e6

GenotypeQuality
all individuals: 7420
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3706
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001380635092142e-5
allele num: 66636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.931112e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

VQSLOD
type: SiteQuality
SIO_000300: -5.109e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.36e0

GenotypeQuality
all individuals: 360
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

DP
type: SiteQuality
SIO_000300: 1.930548e6

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.524e0

FS
type: SiteQuality
SIO_000300: 3.114e0

QD
type: SiteQuality
SIO_000300: 1.076e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001831116981359e-5
allele num: 66626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

QD
type: SiteQuality
SIO_000300: 6.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.237e-1

DP
type: SiteQuality
SIO_000300: 1.930065e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

FS
type: SiteQuality
SIO_000300: 2.204e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.92781e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023541453428864e-4
allele num: 9770
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.822600243013366e-4
allele num: 16460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.589e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 1.114e0

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.926363e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.653e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.625e0

DP
type: SiteQuality
SIO_000300: 1.923858e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.327e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2790
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.065e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: -2.971e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

QD
type: SiteQuality
SIO_000300: 2.77e1

DP
type: SiteQuality
SIO_000300: 1.922819e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 15

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.255232138561463e-4
allele num: 66512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2791
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GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50407604608489e-5
allele num: 66486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.919941e6

QD
type: SiteQuality
SIO_000300: 4.69e0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.185e0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2490
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GenotypeQuality
all individuals: 8184
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variant carriers: 1077

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2630
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7385
bin: 6.75e1
variant carriers: 1

Other
type: Population
allele count: 13
allele frequency: 1.460674157303371e-2
allele num: 890
num of homozygotes: 1

Latino
type: Population
allele count: 59
allele frequency: 5.129542688228134e-3
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 2.470152326060107e-3
allele num: 9716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 94
allele frequency: 1.444376152427781e-2
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 664
allele frequency: 1.000964785335263e-2
allele num: 66336
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 252
allele frequency: 1.532846715328467e-2
allele num: 16440
num of homozygotes: 5

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

FS
type: SiteQuality
SIO_000300: 2.903e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

QD
type: SiteQuality
SIO_000300: 1.257e1

DP
type: SiteQuality
SIO_000300: 1.940327e6

GenotypeQuality
all individuals: 586
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7305
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2694
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

FS
type: SiteQuality
SIO_000300: 3.626e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.911999e6

MQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7305
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1612
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.518208379770475e-5
allele num: 66398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

FS
type: SiteQuality
SIO_000300: 3.626e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 1.911999e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

GenotypeQuality
all individuals: 946
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7305
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1196
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 1.911999e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

FS
type: SiteQuality
SIO_000300: 3.626e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.265e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519756838905775e-4
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

DP
type: SiteQuality
SIO_000300: 1.912083e6

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

VQSLOD
type: SiteQuality
SIO_000300: -3.084e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.589e0

QD
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7308
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.912259e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.375e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

GenotypeQuality
all individuals: 29894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 360
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.544664413326895e-5
allele num: 66272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029654036243822e-4
allele num: 9712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 1.981e1

DP
type: SiteQuality
SIO_000300: 1.907854e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.745e0

VQSLOD
type: SiteQuality
SIO_000300: -3.313e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeQuality
all individuals: 1089
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7445
bin: 6.75e1
variant carriers: 0