7-100218569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218569
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218569
    reference: chr 7
allele count: 7
allele frequency: 6.307329116433296e-5
allele num: 110982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2237C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.940C>T
  hgvsp: ENSP00000443656.1:p.Arg314Trp
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1353C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1161C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2317C>T
  hgvsp: ENSP00000223051.3:p.Arg773Trp
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*992C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2317C>T
  hgvsp: ENSP00000420525.1:p.Arg773Trp
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1938C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24897
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6193
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg773Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

7-100218574-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218574
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218574
    reference: chr 7
allele count: 1
allele frequency: 9.195064089596705e-6
allele num: 108754
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2312G>C
  hgvsp: ENSP00000420525.1:p.Arg771Pro
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2312G>C
  hgvsp: ENSP00000223051.3:p.Arg771Pro
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1348G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1933G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*987G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1156G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2232G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.935G>C
  hgvsp: ENSP00000443656.1:p.Arg312Pro
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22690
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5974
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg771Pro
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

7-100218575-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218575
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218575
    reference: chr 7
allele count: 1
allele frequency: 9.274373052381659e-6
allele num: 107824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2311C>T
  hgvsp: ENSP00000223051.3:p.Arg771Cys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*986C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2311C>T
  hgvsp: ENSP00000420525.1:p.Arg771Cys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.934C>T
  hgvsp: ENSP00000443656.1:p.Arg312Cys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1155C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1347C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1932C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2231C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg771Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-100218576-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218576
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218576
    reference: chr 7
allele count: 1
allele frequency: 9.286258195122857e-6
allele num: 107686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2310C>G
  hgvsp: ENSP00000223051.3:p.Ser770Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2310C>G
  hgvsp: ENSP00000420525.1:p.Ser770Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1931C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.933C>G
  hgvsp: ENSP00000443656.1:p.Ser311Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2230C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1346C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1154C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*985C>G
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser770Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

7-100218592-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218592
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218592
    reference: chr 7
allele count: 1
allele frequency: 1.021450459652707e-5
allele num: 97900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1915C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2214C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1138C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*969C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2294C>A
  hgvsp: ENSP00000223051.3:p.Thr765Asn
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.917C>A
  hgvsp: ENSP00000443656.1:p.Thr306Asn
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1330C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2294C>A
  hgvsp: ENSP00000420525.1:p.Thr765Asn
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12673
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3942
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19660
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr765Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-100218593-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218593
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218593
    reference: chr 7
allele count: 1
allele frequency: 1.022264930179305e-5
allele num: 97822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.916A>T
  hgvsp: ENSP00000443656.1:p.Thr306Ser
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*968A>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1914A>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1137A>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2293A>T
  hgvsp: ENSP00000420525.1:p.Thr765Ser
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2213A>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2293A>T
  hgvsp: ENSP00000223051.3:p.Thr765Ser
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1329A>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19751
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr765Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

7-100218597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218597
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218597
    reference: chr 7
allele count: 3
allele frequency: 3.115588326929068e-5
allele num: 96290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2289C>T
  hgvsp: ENST00000223051.3:c.2289C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*964C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2289C>T
  hgvsp: ENST00000462107.1:c.2289C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1325C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2209C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1133C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.912C>T
  hgvsp: ENST00000544242.1:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1910C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12054
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13262
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser763Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

7-100218603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218603
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218603
    reference: chr 7
allele count: 1
allele frequency: 1.104801467176348e-5
allele num: 90514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2203C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1904C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.906C>T
  hgvsp: ENST00000544242.1:c.906C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*958C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2283C>T
  hgvsp: ENST00000223051.3:c.2283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1319C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2283C>T
  hgvsp: ENST00000462107.1:c.2283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1127C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15073
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala761Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

7-100218605-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218605
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218605
    reference: chr 7
allele count: 1
allele frequency: 1.154041453168998e-5
allele num: 86652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1125G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2201G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2281G>A
  hgvsp: ENSP00000223051.3:p.Ala761Thr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*956G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.904G>A
  hgvsp: ENSP00000443656.1:p.Ala302Thr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2281G>A
  hgvsp: ENSP00000420525.1:p.Ala761Thr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1902G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1317G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10621
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala761Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

7-100218608-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218608
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218608
    reference: chr 7
allele count: 1
allele frequency: 1.188043529914936e-5
allele num: 84172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1122G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2278G>C
  hgvsp: ENSP00000223051.3:p.Gly760Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2278G>C
  hgvsp: ENSP00000420525.1:p.Gly760Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1314G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.901G>C
  hgvsp: ENSP00000443656.1:p.Gly301Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*953G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2198G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1899G>C
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly760Arg
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

7-100218608-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218608
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218608
    reference: chr 7
allele count: 77
allele frequency: 9.147935180345008e-4
allele num: 84172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1122G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1899G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*953G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.901G>A
  hgvsp: ENSP00000443656.1:p.Gly301Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2278G>A
  hgvsp: ENSP00000223051.3:p.Gly760Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1314G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2198G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2278G>A
  hgvsp: ENSP00000420525.1:p.Gly760Arg
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 15815
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16252
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9926
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1908
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly760Arg
num of homozygotes: 1
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

7-100218609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218609
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218609
    reference: chr 7
allele count: 1
allele frequency: 1.189032365460988e-5
allele num: 84102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2197C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2277C>T
  hgvsp: ENST00000462107.1:c.2277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*952C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1121C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2277C>T
  hgvsp: ENST00000223051.3:c.2277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1898C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1313C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.900C>T
  hgvsp: ENST00000544242.1:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro759Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-100218611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218611
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218611
    reference: chr 7
allele count: 1
allele frequency: 1.203224642040669e-5
allele num: 83110
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2275C>T
  hgvsp: ENSP00000420525.1:p.Pro759Ser
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2275C>T
  hgvsp: ENSP00000223051.3:p.Pro759Ser
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1896C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*950C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.898C>T
  hgvsp: ENSP00000443656.1:p.Pro300Ser
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1311C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1119C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2195C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9156
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro759Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

7-100218612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218612
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218612
    reference: chr 7
allele count: 1
allele frequency: 1.203890975633247e-5
allele num: 83064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1310C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2274C>T
  hgvsp: ENST00000462107.1:c.2274C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2274C>T
  hgvsp: ENST00000223051.3:c.2274C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1118C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.897C>T
  hgvsp: ENST00000544242.1:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2194C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*949C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1895C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr758Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-100218613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218613
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218613
    reference: chr 7
allele count: 1
allele frequency: 1.214624073849144e-5
allele num: 82330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.896C>T
  hgvsp: ENSP00000443656.1:p.Thr299Ile
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1894C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1117C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2193C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2273C>T
  hgvsp: ENSP00000420525.1:p.Thr758Ile
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*948C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2273C>T
  hgvsp: ENSP00000223051.3:p.Thr758Ile
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1309C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16149
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr758Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-100218614-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218614
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218614
    reference: chr 7
allele count: 2
allele frequency: 2.454409346390791e-5
allele num: 81486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1893A>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1116A>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2272A>T
  hgvsp: ENSP00000420525.1:p.Thr758Ser
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2192A>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2272A>T
  hgvsp: ENSP00000223051.3:p.Thr758Ser
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*947A>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1308A>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.895A>T
  hgvsp: ENSP00000443656.1:p.Thr299Ser
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16247
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr758Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

7-100218617-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218617
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218617
    reference: chr 7
allele count: 4
allele frequency: 5.059192552868562e-5
allele num: 79064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*944G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1113G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2269G>A
  hgvsp: ENSP00000223051.3:p.Gly757Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.892G>A
  hgvsp: ENSP00000443656.1:p.Gly298Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1890G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2189G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2269G>A
  hgvsp: ENSP00000420525.1:p.Gly757Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1305G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8318
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28737
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly757Arg
num of homozygotes: 1
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-100218618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218618
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218618
    reference: chr 7
allele count: 3
allele frequency: 4.011231448054553e-5
allele num: 74790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.891C>T
  hgvsp: ENST00000544242.1:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2268C>T
  hgvsp: ENST00000223051.3:c.2268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2188C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*943C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2268C>T
  hgvsp: ENST00000462107.1:c.2268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1112C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1304C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1889C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19783
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16559
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Ser756Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

7-100218631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218631
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218631
    reference: chr 7
allele count: 1960
allele frequency: 3.067484662576687e-2
allele num: 63896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.878G>A
  hgvsp: ENSP00000443656.1:p.Arg293His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2175G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2255G>A
  hgvsp: ENSP00000223051.3:p.Arg752His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2255G>A
  hgvsp: ENSP00000420525.1:p.Arg752His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*930G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1099G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1291G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1876G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16169
  bin: 1.25e1
  variant carriers: 624
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.25e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 1.75e1
  variant carriers: 587
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 23243
  bin: 7.5e0
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 2.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 8250
  bin: 6.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 9.75e1
  variant carriers: 1815
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 4.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 6
hgvs: p.Arg752His
num of homozygotes: 30
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

7-100218640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218640
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218640
    reference: chr 7
allele count: 2
allele frequency: 3.403212632725293e-5
allele num: 58768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1282G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1867G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2246G>A
  hgvsp: ENSP00000420525.1:p.Arg749Gln
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2246G>A
  hgvsp: ENSP00000223051.3:p.Arg749Gln
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2166G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.869G>A
  hgvsp: ENSP00000443656.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1090G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*921G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg749Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

7-100218644-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218644
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218644
    reference: chr 7
allele count: 2
allele frequency: 3.532944709415297e-5
allele num: 56610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*917C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2242C>A
  hgvsp: ENSP00000223051.3:p.Leu748Met
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1278C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2242C>A
  hgvsp: ENSP00000420525.1:p.Leu748Met
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.865C>A
  hgvsp: ENSP00000443656.1:p.Leu289Met
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1086C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1863C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2162C>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14785
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5947
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu748Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

7-100218645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218645
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218645
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 56136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2161C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1277C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1862C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1085C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2241C>T
  hgvsp: ENST00000462107.1:c.2241C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2241C>T
  hgvsp: ENST00000223051.3:c.2241C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*916C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.864C>T
  hgvsp: ENST00000544242.1:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26336
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
hgvs: p.His747His
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

7-100218647-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218647
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218647
    reference: chr 7
allele count: 2
allele frequency: 3.756715128291821e-5
allele num: 53238
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2239C>A
  hgvsp: ENSP00000420525.1:p.His747Asn
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.862C>A
  hgvsp: ENSP00000443656.1:p.His288Asn
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2239C>A
  hgvsp: ENSP00000223051.3:p.His747Asn
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2159C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1860C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1275C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*914C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1083C>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26249
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His747Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

7-100218648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218648
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218648
    reference: chr 7
allele count: 1
allele frequency: 1.879063474764177e-5
allele num: 53218
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2238C>T
  hgvsp: ENST00000462107.1:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2158C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.861C>T
  hgvsp: ENST00000544242.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1859C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1082C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*913C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2238C>T
  hgvsp: ENST00000223051.3:c.2238C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1274C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8250
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp746Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-100218649-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218649
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218650
    reference: chr 7
allele count: 1
allele frequency: 1.881042850156126e-5
allele num: 53162
alternate allele: TC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2236dupG
  hgvsp: ENSP00000420525.1:p.Asp746GlyfsTer46
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1857dupG
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1272dupG
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2156dupG
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.859dupG
  hgvsp: ENSP00000443656.1:p.Asp287GlyfsTer46
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1080dupG
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2236dupG
  hgvsp: ENSP00000223051.3:p.Asp746GlyfsTer46
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*911dupG
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 26489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14199
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp746GlyfsTer46
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/7-100218652-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218652
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218652
    reference: chr 7
allele count: 2
allele frequency: 3.955852684046046e-5
allele num: 50558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*909T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1078T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2234T>G
  hgvsp: ENSP00000420525.1:p.Leu745Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.857T>G
  hgvsp: ENSP00000443656.1:p.Leu286Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2234T>G
  hgvsp: ENSP00000223051.3:p.Leu745Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2154T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1855T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1270T>G
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13550
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26602
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33592
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu745Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

7-100218659-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218659
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218659
    reference: chr 7
allele count: 1
allele frequency: 2.23493652780261e-5
allele num: 44744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2147G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2227G>A
  hgvsp: ENSP00000420525.1:p.Ala743Thr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*902G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2227G>A
  hgvsp: ENSP00000223051.3:p.Ala743Thr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1263G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1848G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1071G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.850G>A
  hgvsp: ENSP00000443656.1:p.Ala284Thr
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26721
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10967
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala743Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

7-100218661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218661
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218661
    reference: chr 7
allele count: 1
allele frequency: 2.289377289377289e-5
allele num: 43680
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2225G>A
  hgvsp: ENSP00000420525.1:p.Gly742Asp
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2225G>A
  hgvsp: ENSP00000223051.3:p.Gly742Asp
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*900G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.848G>A
  hgvsp: ENSP00000443656.1:p.Gly283Asp
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1069G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1846G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2145G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1261G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31371
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly742Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

7-100218663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218663
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218663
    reference: chr 7
allele count: 3
allele frequency: 7.048540952022932e-5
allele num: 42562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2143G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2223G>A
  hgvsp: ENST00000462107.1:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*898G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2223G>A
  hgvsp: ENST00000223051.3:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1844G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.846G>A
  hgvsp: ENST00000544242.1:c.846G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1259G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1067G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12019
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26464
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12396
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu741Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

7-100218667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218667
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218667
    reference: chr 7
allele count: 1
allele frequency: 2.444031674650503e-5
allele num: 40916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1255C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2219C>T
  hgvsp: ENSP00000420525.1:p.Thr740Met
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1840C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2139C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1063C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*894C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.842C>T
  hgvsp: ENSP00000443656.1:p.Thr281Met
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2219C>T
  hgvsp: ENSP00000223051.3:p.Thr740Met
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30477
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr740Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

7-100218679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218679
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218679
    reference: chr 7
allele count: 1
allele frequency: 2.861557832083786e-5
allele num: 34946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2207G>A
  hgvsp: ENSP00000420525.1:p.Arg736His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2207G>A
  hgvsp: ENSP00000223051.3:p.Arg736His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*882G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.830G>A
  hgvsp: ENSP00000443656.1:p.Arg277His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1243G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1051G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2127G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1828G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg736His
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

7-100218689-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218689
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218689
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 30276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2117T>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1818T>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.820T>C
  hgvsp: ENSP00000443656.1:p.Phe274Leu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1041T>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2197T>C
  hgvsp: ENSP00000223051.3:p.Phe733Leu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2197T>C
  hgvsp: ENSP00000420525.1:p.Phe733Leu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*872T>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1233T>C
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18006
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25638
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe733Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

7-100218690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218690
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218690
    reference: chr 7
allele count: 1
allele frequency: 3.430531732418525e-5
allele num: 29150
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2196C>T
  hgvsp: ENST00000462107.1:c.2196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*871C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1040C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.819C>T
  hgvsp: ENST00000544242.1:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2116C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1817C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2196C>T
  hgvsp: ENST00000223051.3:c.2196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1232C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile732Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

7-100218695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218695
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218695
    reference: chr 7
allele count: 1
allele frequency: 4.002561639449247e-5
allele num: 24984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2191C>T
  hgvsp: ENSP00000223051.3:p.His731Tyr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1812C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2191C>T
  hgvsp: ENSP00000420525.1:p.His731Tyr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.814C>T
  hgvsp: ENSP00000443656.1:p.His272Tyr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*866C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1227C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1035C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2111C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4929
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15270
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 1.25e1
  variant carriers: 1
hgvs: p.His731Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

7-100218697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218697
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218697
    reference: chr 7
allele count: 1
allele frequency: 4.043671653861707e-5
allele num: 24730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*864G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2189G>A
  hgvsp: ENSP00000420525.1:p.Arg730His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1810G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1033G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2189G>A
  hgvsp: ENSP00000223051.3:p.Arg730His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2109G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.812G>A
  hgvsp: ENSP00000443656.1:p.Arg271His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1225G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15216
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30477
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg730His
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

7-100218698-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218698
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218698
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 23728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1809C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2108C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1224C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*863C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1032C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2188C>T
  hgvsp: ENSP00000223051.3:p.Arg730Cys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2188C>T
  hgvsp: ENSP00000420525.1:p.Arg730Cys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.811C>T
  hgvsp: ENSP00000443656.1:p.Arg271Cys
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14556
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg730Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

7-100218703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218703
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218703
    reference: chr 7
allele count: 1
allele frequency: 4.655493482309125e-5
allele num: 21480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1027C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*858C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1219C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1804C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2183C>T
  hgvsp: ENSP00000223051.3:p.Pro728Leu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2183C>T
  hgvsp: ENSP00000420525.1:p.Pro728Leu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.806C>T
  hgvsp: ENSP00000443656.1:p.Pro269Leu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2103C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12706
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro728Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

7-100218710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218710
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218710
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 18164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2176G>A
  hgvsp: ENSP00000223051.3:p.Asp726Asn
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.799G>A
  hgvsp: ENSP00000443656.1:p.Asp267Asn
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1020G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1797G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2096G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2176G>A
  hgvsp: ENSP00000420525.1:p.Asp726Asn
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1212G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*851G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10015
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9095
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp726Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

7-100218711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218711
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218711
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 18102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.798C>T
  hgvsp: ENST00000544242.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2175C>T
  hgvsp: ENST00000462107.1:c.2175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1796C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2095C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1211C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2175C>T
  hgvsp: ENST00000223051.3:c.2175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1019C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*850C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9928
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala725Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

7-100218714-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218714
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218714
    reference: chr 7
allele count: 28
allele frequency: 1.66270783847981e-3
allele num: 16840
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*847A>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2172A>G
  hgvsp: ENST00000223051.3:c.2172A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1016A>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.795A>G
  hgvsp: ENST00000544242.1:c.795A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2172A>G
  hgvsp: ENST00000462107.1:c.2172A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1208A>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1793A>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2092A>G
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35109
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 7.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33951
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 1.75e1
  variant carriers: 4
hgvs: p.Pro724Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

7-100218717-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218717
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218717
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 16148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2169G>A
  hgvsp: ENST00000223051.3:c.2169G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.792G>A
  hgvsp: ENST00000544242.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*844G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2089G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1790G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1013G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2169G>A
  hgvsp: ENST00000462107.1:c.2169G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1205G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35188
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Ser723Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

7-100218723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218723
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218723
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 14868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2083C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2163C>T
  hgvsp: ENST00000223051.3:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*1007C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1199C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2163C>T
  hgvsp: ENST00000462107.1:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.786C>T
  hgvsp: ENST00000544242.1:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1784C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*838C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34686
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr721Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

7-100218747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218747
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218747
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 10560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1175G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.762G>A
  hgvsp: ENST00000544242.1:c.762G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2059G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*814G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2139G>A
  hgvsp: ENST00000223051.3:c.2139G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*983G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1760G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2139G>A
  hgvsp: ENST00000462107.1:c.2139G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29004
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2139G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

7-100218754-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218754
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218754
    reference: chr 7
allele count: 8
allele frequency: 8.631851532153647e-4
allele num: 9268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1173-5C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1758-5C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.760-5C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*981-5C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2057-5C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2137-5C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*812-5C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2137-5C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27545
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24385
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
hgvs: c.2137-5C>T
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

7-100218761-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218761
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218761
    reference: chr 7
allele count: 1
allele frequency: 1.152604887044721e-4
allele num: 8676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1758-12C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*812-12C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1173-12C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*981-12C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2057-12C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.760-12C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2137-12C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2137-12C>G
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

7-100218763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218763
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218763
    reference: chr 7
allele count: 2
allele frequency: 2.323420074349442e-4
allele num: 8608
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2137-14C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2137-14C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2057-14C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*981-14C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.760-14C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*812-14C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1173-14C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1758-14C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

7-100218778-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218778
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218778
    reference: chr 7
allele count: 1
allele frequency: 1.321702352630188e-4
allele num: 7566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*981-29A>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2137-29A>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*812-29A>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2137-29A>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1758-29A>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2057-29A>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1173-29A>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.760-29A>C
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5052
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

7-100218780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218780
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218780
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 7460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1173-31C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*812-31C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*981-31C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2137-31C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2137-31C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2057-31C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.760-31C>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1758-31C>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18908
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

7-100218782-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218782
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218782
    reference: chr 7
allele count: 1
allele frequency: 1.34661998384056e-4
allele num: 7426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*812-33C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.760-33C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*981-33C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2057-33C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1173-33C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2137-33C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1758-33C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2137-33C>G
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18763
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/7-100218793-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218793
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218793
    reference: chr 7
allele count: 1
allele frequency: 1.440922190201729e-4
allele num: 6940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.760-44G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2057-44G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*981-44G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*812-44G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2137-44G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1758-44G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2137-44G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1173-44G>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

7-100218798-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100218798
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100218798
    reference: chr 7
allele count: 1
allele frequency: 1.486325802615933e-4
allele num: 6728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2057-49C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2137-49C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2137-49C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*981-49C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1758-49C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*812-49C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.760-49C>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1173-49C>G
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

7-100224354-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224354
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224354
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 13760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.759+32G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2136+32G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.514G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2056+32G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*811+32G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1757+32G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*980+32G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1172+32G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2136+32G>C
  variant of: http://identifiers.org/hgnc/11762
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum

7-100224355-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224355
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224356
    reference: chr 7
allele count: 3
allele frequency: 2.169511136823836e-4
allele num: 13828
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.759+30dupC
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.512dupC
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1757+30dupC
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1172+30dupC
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*811+30dupC
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2136+30dupC
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2056+30dupC
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*980+30dupC
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2136+30dupC
  variant of: http://identifiers.org/hgnc/11762
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16713
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

7-100224366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224366
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224366
    reference: chr 7
allele count: 4
allele frequency: 2.58164450755131e-4
allele num: 15494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2056+20G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.502G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2136+20G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.759+20G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1757+20G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*811+20G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*980+20G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2136+20G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1172+20G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13617
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

7-100224377-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224377
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224377
    reference: chr 7
allele count: 1
allele frequency: 5.722788142382969e-5
allele num: 17474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1757+9C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*980+9C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1172+9C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.491C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2056+9C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2136+9C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.759+9C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*811+9C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2136+9C>A
  variant of: http://identifiers.org/hgnc/11762
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-100224387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224387
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224387
    reference: chr 7
allele count: 4
allele frequency: 2.172260236776366e-4
allele num: 18414
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2135G>A
  hgvsp: ENSP00000420525.1:p.Arg712Gln
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2055G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2135G>A
  hgvsp: ENSP00000223051.3:p.Arg712Gln
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*979G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1756G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1171G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.481G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.758G>A
  hgvsp: ENSP00000443656.1:p.Arg253Gln
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*810G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19377
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Arg712Gln
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

7-100224389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224389
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224389
    reference: chr 7
allele count: 1
allele frequency: 5.390254420008625e-5
allele num: 18552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2053G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1169G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.479G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2133G>A
  hgvsp: ENSP00000223051.3:p.Met711Ile
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2133G>A
  hgvsp: ENSP00000420525.1:p.Met711Ile
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.756G>A
  hgvsp: ENSP00000443656.1:p.Met252Ile
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*808G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*977G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1754G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Met711Ile
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

7-100224389-CATTAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224389
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224384
    reference: chr 7
allele count: 1
allele frequency: 5.390254420008625e-5
allele num: 18552
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2128_2132delATAAT
  hgvsp: ENSP00000420525.1:p.Ile710AlafsTer80
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.474_478delATAAT
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2048_2052delATAAT
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*972_*976delATAAT
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.751_755delATAAT
  hgvsp: ENSP00000443656.1:p.Ile251AlafsTer80
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1164_1168delATAAT
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2128_2132delATAAT
  hgvsp: ENSP00000223051.3:p.Ile710AlafsTer80
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1749_1753delATAAT
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*803_*807delATAAT
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 19923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile710AlafsTer80
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: CATTAT
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-100224396-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224396
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224396
    reference: chr 7
allele count: 2
allele frequency: 1.064056182166418e-4
allele num: 18796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*801G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.749G>A
  hgvsp: ENSP00000443656.1:p.Arg250His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2126G>A
  hgvsp: ENSP00000223051.3:p.Arg709His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1162G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.472G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2126G>A
  hgvsp: ENSP00000420525.1:p.Arg709His
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2046G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*970G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1747G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg709His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-100224408-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224408
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224408
    reference: chr 7
allele count: 1
allele frequency: 5.226298735235706e-5
allele num: 19134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2034T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2114T>G
  hgvsp: ENSP00000420525.1:p.Met705Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*789T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1150T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.737T>G
  hgvsp: ENSP00000443656.1:p.Met246Arg
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*958T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1735T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.460T>G
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2114T>G
  hgvsp: ENSP00000223051.3:p.Met705Arg
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met705Arg
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-100224420-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224420
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224420
    reference: chr 7
allele count: 1
allele frequency: 5.166356685265551e-5
allele num: 19356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*777G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.725G>T
  hgvsp: ENSP00000443656.1:p.Arg242Leu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*946G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2022G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2102G>T
  hgvsp: ENSP00000223051.3:p.Arg701Leu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1138G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2102G>T
  hgvsp: ENSP00000420525.1:p.Arg701Leu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.448G>T
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1723G>T
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21631
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg701Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

7-100224424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224424
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224424
    reference: chr 7
allele count: 1
allele frequency: 5.159426271798576e-5
allele num: 19382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.721G>A
  hgvsp: ENSP00000443656.1:p.Glu241Lys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2098G>A
  hgvsp: ENSP00000223051.3:p.Glu700Lys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.444G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1719G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*773G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2018G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*942G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1134G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2098G>A
  hgvsp: ENSP00000420525.1:p.Glu700Lys
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu700Lys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

7-100224425-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224425
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224425
    reference: chr 7
allele count: 2
allele frequency: 1.030821564787135e-4
allele num: 19402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1133C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2017C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*772C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2097C>A
  hgvsp: ENSP00000223051.3:p.Asp699Glu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.720C>A
  hgvsp: ENSP00000443656.1:p.Asp240Glu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2097C>A
  hgvsp: ENSP00000420525.1:p.Asp699Glu
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*941C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.443C>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1718C>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7380
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp699Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

7-100224429-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224429
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224429
    reference: chr 7
allele count: 2
allele frequency: 1.027960526315789e-4
allele num: 19456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1129G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2093G>C
  hgvsp: ENSP00000223051.3:p.Arg698Thr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2013G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.439G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*937G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2093G>C
  hgvsp: ENSP00000420525.1:p.Arg698Thr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*768G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.716G>C
  hgvsp: ENSP00000443656.1:p.Arg239Thr
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1714G>C
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg698Thr
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

7-100224431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224431
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224431
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 19474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*935G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2091G>A
  hgvsp: ENST00000223051.3:c.2091G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2091G>A
  hgvsp: ENST00000462107.1:c.2091G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.714G>A
  hgvsp: ENST00000544242.1:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2011G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*766G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1127G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1712G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.437G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25461
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21954
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu697Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

7-100224434-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224434
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224434
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 19532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2088G>A
  hgvsp: ENST00000223051.3:c.2088G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2008G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2088G>A
  hgvsp: ENST00000462107.1:c.2088G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.434G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*932G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*763G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.711G>A
  hgvsp: ENST00000544242.1:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1709G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1124G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22841
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3109
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu696Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

7-100224436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224436
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224436
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 19556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*761G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.432G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.709G>A
  hgvsp: ENSP00000443656.1:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1122G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2086G>A
  hgvsp: ENSP00000223051.3:p.Glu696Lys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2006G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2086G>A
  hgvsp: ENSP00000420525.1:p.Glu696Lys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1707G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*930G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26235
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu696Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

7-100224437-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224437
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224437
    reference: chr 7
allele count: 99
allele frequency: 5.057212913771965e-3
allele num: 19576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.708G>C
  hgvsp: ENST00000544242.1:c.708G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1706G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2085G>C
  hgvsp: ENST00000223051.3:c.2085G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.431G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*929G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*760G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2085G>C
  hgvsp: ENST00000462107.1:c.2085G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1121G>C
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.2005G>C
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26230
  bin: 2.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 10
hgvs: p.Ser695Ser
num of homozygotes: 1
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

7-100224451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224451
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224451
    reference: chr 7
allele count: 2
allele frequency: 1.016983626563612e-4
allele num: 19666
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2071G>A
  hgvsp: ENSP00000420525.1:p.Glu691Lys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.694G>A
  hgvsp: ENSP00000443656.1:p.Glu232Lys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*915G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.417G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2071G>A
  hgvsp: ENSP00000223051.3:p.Glu691Lys
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.1991G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*746G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1107G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1692G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28234
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu691Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

7-100224456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224456
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224456
    reference: chr 7
allele count: 1
allele frequency: 5.08336722244815e-5
allele num: 19672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.1986G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1102G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.689G>A
  hgvsp: ENSP00000443656.1:p.Arg230Gln
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2066G>A
  hgvsp: ENSP00000420525.1:p.Arg689Gln
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*741G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.412G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2066G>A
  hgvsp: ENSP00000223051.3:p.Arg689Gln
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1687G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*910G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg689Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

7-100224461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100224461
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 100224461
    reference: chr 7
allele count: 1
allele frequency: 5.086987486010784e-5
allele num: 19658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000476304
  gene symbol: TFR2
  hgvsc: ENST00000476304.1:n.1682G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000462090
  gene symbol: TFR2
  hgvsc: ENST00000462090.1:n.1097G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000420525
  ensembl transcript: ENST00000462107
  gene symbol: TFR2
  hgvsc: ENST00000462107.1:c.2061G>A
  hgvsp: ENST00000462107.1:c.2061G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000443656
  ensembl transcript: ENST00000544242
  gene symbol: TFR2
  hgvsc: ENST00000544242.1:c.684G>A
  hgvsp: ENST00000544242.1:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000461176
  gene symbol: TFR2
  hgvsc: ENST00000461176.1:n.407G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000223051
  ensembl transcript: ENST00000223051
  gene symbol: TFR2
  hgvsc: ENST00000223051.3:c.2061G>A
  hgvsp: ENST00000223051.3:c.2061G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000418942
  ensembl transcript: ENST00000490084
  gene symbol: TFR2
  hgvsc: ENST00000490084.1:c.*905G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000106327
  ensembl protein: ENSP00000413905
  ensembl transcript: ENST00000431692
  gene symbol: TFR2
  hgvsc: ENST00000431692.1:c.*736G>A
  variant of: http://identifiers.org/hgnc/11762
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106327
  ensembl transcript: ENST00000465294
  gene symbol: TFR2
  hgvsc: ENST00000465294.1:n.1981G>A
  variant of: http://identifiers.org/hgnc/11762
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Lys687Lys
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9736
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 897
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.140957100013039e-4
allele num: 61352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.302e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

FS
type: SiteQuality
SIO_000300: 1.0857e1

VQSLOD
type: SiteQuality
SIO_000300: -3.18e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

DP
type: SiteQuality
SIO_000300: 1.401231e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.606765327695561e-5
allele num: 15136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60236
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

FS
type: SiteQuality
SIO_000300: 1.721e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

DP
type: SiteQuality
SIO_000300: 1.343689e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 537
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.106194690265487e-4
allele num: 9040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.045e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.32194e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

GenotypeQuality
all individuals: 659
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 532
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.675322499581169e-5
allele num: 59690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.29e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

DP
type: SiteQuality
SIO_000300: 1.31957e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

FS
type: SiteQuality
SIO_000300: 6.899e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23115
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14274
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.13455865668255e-4
allele num: 8814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e0

FS
type: SiteQuality
SIO_000300: 8.401999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.153802e6

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23646
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8116
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.013606396409034e-5
allele num: 14258
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.09e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.139e-1

DP
type: SiteQuality
SIO_000300: 1.152633e6

QD
type: SiteQuality
SIO_000300: 9.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21017
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 482
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23808
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.608315262095266e-5
allele num: 53492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

DP
type: SiteQuality
SIO_000300: 1.129021e6

VQSLOD
type: SiteQuality
SIO_000300: -8.296e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

GenotypeQuality
all individuals: 3271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 707
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.989178866963717e-5
allele num: 50272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.15e1

MQRankSum
type: SiteQuality
SIO_000300: -1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.045689e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeQuality
all individuals: 504
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25477
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.397428731134712e-4
allele num: 7156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48054
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.000502e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 6.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 1.631e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.777e0

VQSLOD
type: SiteQuality
SIO_000300: -1.525e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

GenotypeQuality
all individuals: 428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.790830945558739e-4
allele num: 5584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13244
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.382e1

DP
type: SiteQuality
SIO_000300: 9.79698e5

FS
type: SiteQuality
SIO_000300: 1.887e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

GenotypeQuality
all individuals: 913
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 622
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 685
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 59
allele frequency: 8.489208633093525e-3
allele num: 6950
num of homozygotes: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.550588945937783e-5
allele num: 13244
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 6.981290142418319e-4
allele num: 7162
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.790830945558739e-4
allele num: 5584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.501823642995066e-4
allele num: 46610
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.538461538461538e-3
allele num: 650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 7.552870090634441e-4
allele num: 3972
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.382e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

FS
type: SiteQuality
SIO_000300: 1.887e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 9.79698e5

GenotypeQuality
all individuals: 854
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26495
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15599
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.14638334406525e-5
allele num: 46590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3992
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.074e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 9.76246e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

GenotypeQuality
all individuals: 491
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15181
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.423690205011389e-4
allele num: 7024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13128
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 9.56713e5

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

QD
type: SiteQuality
SIO_000300: 1.057e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.568e0

GenotypeQuality
all individuals: 15607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.17542638357118e-5
allele num: 45968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7014
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5480
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

DP
type: SiteQuality
SIO_000300: 9.5558e5

VQSLOD
type: SiteQuality
SIO_000300: -2.389e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 15258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.194040984685594e-5
allele num: 45578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.299e1

DP
type: SiteQuality
SIO_000300: 9.4868e5

FS
type: SiteQuality
SIO_000300: 8.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 28020
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.438132433871826e-5
allele num: 45064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6816
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

FS
type: SiteQuality
SIO_000300: 3.971e0

QD
type: SiteQuality
SIO_000300: 7.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.008e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 9.387e5

GenotypeQuality
all individuals: 2318
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.341554792382142e-4
allele num: 12812
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.288015375463323e-5
allele num: 43706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.895e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 9.16674e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

QD
type: SiteQuality
SIO_000300: 1.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

GenotypeQuality
all individuals: 398
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.0755500207555e-4
allele num: 4818
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.599232368463138e-4
allele num: 12506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.142e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 2.893e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

DP
type: SiteQuality
SIO_000300: 8.81776e5

GenotypeQuality
all individuals: 625
bin: 5.75e1
variant carriers: 28

GenotypeQuality
all individuals: 29723
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 44

GenotypeQuality
all individuals: 1299
bin: 3.75e1
variant carriers: 15

GenotypeQuality
all individuals: 4435
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 545
bin: 4.75e1
variant carriers: 23

GenotypeQuality
all individuals: 3096
bin: 1.75e1
variant carriers: 23

GenotypeQuality
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bin: 7.25e1
variant carriers: 32

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 62

GenotypeQuality
all individuals: 1317
bin: 6.75e1
variant carriers: 20

GenotypeQuality
all individuals: 787
bin: 5.25e1
variant carriers: 22

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 36

GenotypeQuality
all individuals: 296
bin: 7.75e1
variant carriers: 39

European (Non-Finnish)
type: Population
allele count: 1573
allele frequency: 4.498913167829768e-2
allele num: 34964
num of homozygotes: 25

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

Latino
type: Population
allele count: 86
allele frequency: 1.749389747762408e-2
allele num: 4916
num of homozygotes: 0

South Asian
type: Population
allele count: 123
allele frequency: 1.050563717116502e-2
allele num: 11708
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 135
allele frequency: 5.537325676784249e-2
allele num: 2438
num of homozygotes: 3

Other
type: Population
allele count: 14
allele frequency: 2.777777777777778e-2
allele num: 504
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 5.398361876396128e-3
allele num: 5372
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

FS
type: SiteQuality
SIO_000300: 5.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.0076e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

GenotypeQuality
all individuals: 825
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34332
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9141
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
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variant carriers: 0

GenotypeQuality
all individuals: 313
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variant carriers: 0

GenotypeQuality
all individuals: 1629
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variant carriers: 0

GenotypeQuality
all individuals: 922
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variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.298022420959819e-5
allele num: 31756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2200
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 1.131e0

VQSLOD
type: SiteQuality
SIO_000300: -2.664e-1

QD
type: SiteQuality
SIO_000300: 6.35e0

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.39e-1

DP
type: SiteQuality
SIO_000300: 7.51174e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

GenotypeQuality
all individuals: 1268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
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variant carriers: 2

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
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variant carriers: 0

GenotypeQuality
all individuals: 9276
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.556947085437021e-5
allele num: 30502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.747999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.58e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.035e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.98e0

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 7.34405e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
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variant carriers: 1

GenotypeQuality
all individuals: 35095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 9161
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variant carriers: 0

GenotypeQuality
all individuals: 277
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variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3980
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.29603e5

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.969e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 2.65e0

GenotypeQuality
all individuals: 8057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
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GenotypeQuality
all individuals: 936
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variant carriers: 0

GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 410
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GenotypeQuality
all individuals: 278
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variant carriers: 0

GenotypeQuality
all individuals: 2055
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variant carriers: 0

GenotypeQuality
all individuals: 33636
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variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1209
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.869508319312021e-4
allele num: 10698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 7.07972e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

QD
type: SiteQuality
SIO_000300: 1.225e1

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

GenotypeQuality
all individuals: 1902
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7393
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.513456538542618e-5
allele num: 28462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4824
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.938e0

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.25e-1

DP
type: SiteQuality
SIO_000300: 7.07013e5

FS
type: SiteQuality
SIO_000300: 1.333e0

QD
type: SiteQuality
SIO_000300: 1.678e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeQuality
all individuals: 285
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34464
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
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variant carriers: 0

GenotypeQuality
all individuals: 195
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GenotypeQuality
all individuals: 1677
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 298
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variant carriers: 0

GenotypeQuality
all individuals: 8353
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3224
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.068680182043856e-4
allele num: 4834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3656
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.599e0

QD
type: SiteQuality
SIO_000300: 1.09e1

DP
type: SiteQuality
SIO_000300: 7.06128e5

FS
type: SiteQuality
SIO_000300: 7.935e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

MQ
type: SiteQuality
SIO_000300: 5.846e1

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

GenotypeQuality
all individuals: 1915
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8498
bin: 7.5e0
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GenotypeQuality
all individuals: 186
bin: 4.25e1
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GenotypeQuality
all individuals: 7837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1770
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.697923643670462e-4
allele num: 2986
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3372
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26950
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -1.229e-1

QD
type: SiteQuality
SIO_000300: 8.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 6.8756e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2704
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South Asian
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allele frequency: 1.010917913465427e-4
allele num: 9892
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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FS
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DP
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MQRankSum
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SIO_000300: 3.87e-1

MQ
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2420
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.348960598416978e-5
allele num: 22994
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 2.305e1

FS
type: SiteQuality
SIO_000300: 9.039999999999999e0

BaseQRankSum
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SIO_000300: 3.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.618000000000001e-1

DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22382
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 364
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Latino
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allele frequency: 0.0e0
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South Asian
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allele count: 3
allele frequency: 3.101095720487906e-4
allele num: 9674
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1296
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
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SIO_000300: 0.0e0

QD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1190
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.474022761009402e-4
allele num: 4042
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 21380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.162e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.22082e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

FS
type: SiteQuality
SIO_000300: 4.957e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.123343068973264e-4
allele num: 8902
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 17926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQ
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BaseQRankSum
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QD
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InbreedingCoeff
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SIO_000300: -3.87e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 15262
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South Asian
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MQ
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SIO_000300: 5.682e1

BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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FS
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QD
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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Other
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East Asian
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African
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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FS
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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East Asian
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Latino
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MQRankSum
type: SiteQuality
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VQSLOD
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QD
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MQ
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5117
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.26856292376385e-5
allele num: 12094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 3.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.283e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.96e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 4.51709e5

GenotypeQuality
all individuals: 788
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31258
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.3923e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 7.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.21e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.794e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 96
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4530
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.723842862699339e-5
allele num: 10284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 6.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 3.9e0

VQSLOD
type: SiteQuality
SIO_000300: -1.393e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.835e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.55e-2

DP
type: SiteQuality
SIO_000300: 4.05261e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
all individuals: 3382
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 167
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 491
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33943
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GenotypeQuality
all individuals: 443
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 8.27e0

DP
type: SiteQuality
SIO_000300: 3.51415e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 34125
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
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variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 937
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variant carriers: 0

GenotypeQuality
all individuals: 165
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variant carriers: 0

GenotypeQuality
all individuals: 9270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
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variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 3.50348e5

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.26e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.176e0

QD
type: SiteQuality
SIO_000300: 7.54e0

GenotypeQuality
all individuals: 8356
bin: 2.25e1
variant carriers: 9

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2307
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 9.25e1
variant carriers: 8

GenotypeQuality
all individuals: 165
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 247
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 298
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 878
bin: 1.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 3.390256152687092e-3
allele num: 7964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.194630872483221e-4
allele num: 2384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5238
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.189e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.290000000000001e-2

FS
type: SiteQuality
SIO_000300: 5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 3.25773e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 33999
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 464
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 9.75e1
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GenotypeQuality
all individuals: 388
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 2913
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.539999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.171e1

VQSLOD
type: SiteQuality
SIO_000300: -2.016e0

DP
type: SiteQuality
SIO_000300: 3.16249e5

GenotypeQuality
all individuals: 680
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.75e1
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GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7511
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.729999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 2.91418e5

VQSLOD
type: SiteQuality
SIO_000300: -7.667e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.292e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
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GenotypeQuality
all individuals: 302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
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GenotypeQuality
all individuals: 49
bin: 8.75e1
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GenotypeQuality
all individuals: 272
bin: 9.75e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 4997
bin: 2.25e1
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GenotypeQuality
all individuals: 123
bin: 7.25e1
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GenotypeQuality
all individuals: 40
bin: 9.25e1
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GenotypeQuality
all individuals: 145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1800
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.110000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.382e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.041e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 2.17784e5

GenotypeQuality
all individuals: 4360
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 608
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.78931413414172e-4
allele num: 5278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 3.64963503649635e-3
allele num: 1644
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.00198e5

FS
type: SiteQuality
SIO_000300: 3.969e0

QD
type: SiteQuality
SIO_000300: 1.666e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.110000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23616
bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.541478129713424e-4
allele num: 1326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.916e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

VQSLOD
type: SiteQuality
SIO_000300: -1.896e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.09e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.89431e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.061e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 479
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.54320987654321e-3
allele num: 1296
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.46e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

DP
type: SiteQuality
SIO_000300: 1.87992e5

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 564
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101723413198823e-4
allele num: 4758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.66723e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.169999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 1.14e1

GenotypeQuality
all individuals: 5432
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 271
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GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.109e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.18e-2

DP
type: SiteQuality
SIO_000300: 1.64346e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

GenotypeQuality
all individuals: 399
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 6.75e1
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 415
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.67379679144385e-3
allele num: 374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.63187e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.548e0

QD
type: SiteQuality
SIO_000300: 2.676e1

GenotypeQuality
all individuals: 212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.953125e-3
allele num: 512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.52945e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.032e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.93e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 7.763975155279503e-4
allele num: 1288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.53404e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.697e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.379999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.183e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 251
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GenotypeQuality
all individuals: 808
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.303e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-2

DP
type: SiteQuality
SIO_000300: 2.23654e5

QD
type: SiteQuality
SIO_000300: 7.57e0

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 813
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 231
bin: 1.25e1
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GenotypeQuality
all individuals: 3472
bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 280
bin: 3.25e1
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 2398
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GenotypeQuality
all individuals: 179
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305483028720627e-4
allele num: 7660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.524886877828054e-4
allele num: 4420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.73e-2

MQ
type: SiteQuality
SIO_000300: 6.012e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.176e0

DP
type: SiteQuality
SIO_000300: 2.25146e5

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.385e0

VQSLOD
type: SiteQuality
SIO_000300: -2.917e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.198856251624642e-4
allele num: 7694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.39e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

DP
type: SiteQuality
SIO_000300: 2.46464e5

FS
type: SiteQuality
SIO_000300: 9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.897e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.039e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.391999999999999e-1

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501501501501501e-4
allele num: 6660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 6.894e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.198e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.45e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

DP
type: SiteQuality
SIO_000300: 2.70835e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 2.25e1
variant carriers: 1

African
type: Population
allele count: 2
allele frequency: 8.190008190008191e-4
allele num: 2442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.37324910738808e-4
allele num: 7282
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.273560876209883e-4
allele num: 7852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.83972e5

MQ
type: SiteQuality
SIO_000300: 5.907e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

FS
type: SiteQuality
SIO_000300: 6.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17830
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.353179972936401e-4
allele num: 7390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.665e1

QD
type: SiteQuality
SIO_000300: 1.12e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.05e-1

DP
type: SiteQuality
SIO_000300: 2.86824e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.353179972936401e-4
allele num: 7390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.47e-2

QD
type: SiteQuality
SIO_000300: 1.12e1

VQSLOD
type: SiteQuality
SIO_000300: -7.05e-1

DP
type: SiteQuality
SIO_000300: 2.86824e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

FS
type: SiteQuality
SIO_000300: 1.665e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.29e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.541296060991105e-4
allele num: 7870
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.185e1

DP
type: SiteQuality
SIO_000300: 2.92739e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.281722635221738e-4
allele num: 7802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 1.501e1

FS
type: SiteQuality
SIO_000300: 9.361000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.392e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.12e-2

DP
type: SiteQuality
SIO_000300: 3.00154e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 79
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.958579881656805e-3
allele num: 338
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.883e0

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.27e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.127e0

DP
type: SiteQuality
SIO_000300: 3.0418e5

QD
type: SiteQuality
SIO_000300: 1.021e1

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22258
bin: 7.5e0
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GenotypeQuality
all individuals: 188
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.242152466367713e-3
allele num: 446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.669e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.085e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.07e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

DP
type: SiteQuality
SIO_000300: 3.06266e5

QD
type: SiteQuality
SIO_000300: 1.537e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.507522567703109e-4
allele num: 7976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.32e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

QD
type: SiteQuality
SIO_000300: 1.114e1

DP
type: SiteQuality
SIO_000300: 3.07125e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.53613999492772e-4
allele num: 7886
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.973e1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 3.08036e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.32e-2

MQ
type: SiteQuality
SIO_000300: 5.891e1

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 7.782e0

DP
type: SiteQuality
SIO_000300: 3.08246e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 7.84e0

VQSLOD
type: SiteQuality
SIO_000300: -1.257e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.439999999999999e-2

GenotypeQuality
all individuals: 257
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7330
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 330
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 3.10635e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.781e-1

QD
type: SiteQuality
SIO_000300: 1.58e1

GenotypeQuality
all individuals: 23137
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.407e0

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 3.11781e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.36e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.021e0

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1155
bin: 6.75e1
variant carriers: 6

GenotypeQuality
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bin: 7.5e0
variant carriers: 19

GenotypeQuality
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bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1388
bin: 2.25e1
variant carriers: 6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 3

GenotypeQuality
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bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 167
bin: 9.75e1
variant carriers: 92

GenotypeQuality
all individuals: 328
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 7271
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 5

Latino
type: Population
allele count: 2
allele frequency: 5.747126436781609e-3
allele num: 348
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.776049766718507e-4
allele num: 2572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 86
allele frequency: 1.062515443538424e-2
allele num: 8094
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.140973630831643e-3
allele num: 7888
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.164e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 3.15667e5

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2720
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 107
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GenotypeQuality
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GenotypeQuality
all individuals: 7379
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GenotypeQuality
all individuals: 17
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GenotypeQuality
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GenotypeQuality
all individuals: 1186
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GenotypeQuality
all individuals: 372
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variant carriers: 0

GenotypeQuality
all individuals: 270
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.456398919184475e-4
allele num: 8142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

DP
type: SiteQuality
SIO_000300: 3.25269e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.38e-2

QD
type: SiteQuality
SIO_000300: 1.265e1

FS
type: SiteQuality
SIO_000300: 1.804e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.086e-1

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2395
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 327
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GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 26275
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 410
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 219
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GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7417
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.26806999746386e-4
allele num: 7886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.89e1

VQSLOD
type: SiteQuality
SIO_000300: -2.045e0

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.418e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.36e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.84e-1

DP
type: SiteQuality
SIO_000300: 3.29139e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0