5-87516541-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516541
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516538
    reference: chr 5
allele count: 5
allele frequency: 1.499970000599988e-4
allele num: 33334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-8_244-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-8_194-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-8_257-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-8_-92-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-8_290-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-8_-92-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-8_290-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-8_290-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-8_*11-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-8_-219-6delCTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-8_585-6delCTT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.290-8_290-6delCTT
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: AAAG
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

5-87516542-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516542
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516540
    reference: chr 5
allele count: 20
allele frequency: 3.65296803652968e-4
allele num: 54750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-8_290-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-8_257-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-8_-219-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-8_585-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-8_*11-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-8_194-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-8_290-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-8_244-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-8_290-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-8_-92-7delCT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-8_-92-7delCT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.290-8_290-7delCT
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: AAG
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

5-87516543-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516543
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516542
    reference: chr 5
allele count: 36
allele frequency: 5.554012774229381e-4
allele num: 64818
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-8delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-8delC
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.290-8delC
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: AG
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

5-87516544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516544
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516544
    reference: chr 5
allele count: 621
allele frequency: 1.498552123552123e-1
allele num: 4144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-8C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-8C>T
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 9.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 4.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 5.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 4.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 3.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: c.290-8C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum

5-87516544-G-GAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516544
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516546
    reference: chr 5
allele count: 190
allele frequency: 4.584942084942085e-2
allele num: 4144
alternate allele: GAA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-10_-92-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-10_257-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-10_194-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-10_290-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-10_-219-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-10_-92-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-10_244-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-10_290-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-10_585-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-10_290-9dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-10_*11-9dupTT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.25e1
  variant carriers: 16
num of homozygotes: 58
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-87516544-G-GAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516544
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516547
    reference: chr 5
allele count: 264
allele frequency: 6.37065637065637e-2
allele num: 4144
alternate allele: GAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-11_257-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-11_290-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-11_290-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-11_290-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-11_-92-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-11_*11-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-11_585-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-11_-219-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-11_244-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-11_-92-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-11_194-9dupTTT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 89
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-87516544-G-GAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516544
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516548
    reference: chr 5
allele count: 377
allele frequency: 9.097490347490347e-2
allele num: 4144
alternate allele: GAAAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-12_-92-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-12_194-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-12_290-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-12_290-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-12_*11-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-12_-92-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-12_244-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-12_-219-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-12_257-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-12_585-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-12_290-9dupTTTT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 5.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 53
num of homozygotes: 119
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

5-87516544-G-GAAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516544
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516549
    reference: chr 5
allele count: 190
allele frequency: 4.584942084942085e-2
allele num: 4144
alternate allele: GAAAAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-13_585-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-13_244-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-13_194-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-13_257-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-13_-219-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-13_-92-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-13_290-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-13_*11-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-13_290-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-13_-92-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-13_290-9dupTTTTT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 53723
  bin: 2.5e0
  variant carriers: 64
num of homozygotes: 72
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

5-87516544-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516544
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516543
    reference: chr 5
allele count: 32
allele frequency: 7.722007722007722e-3
allele num: 4144
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-9delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-9delT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 7.5e0
  variant carriers: 11
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: GA
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

5-87516556-A-AGGTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516556
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516560
    reference: chr 5
allele count: 3
allele frequency: 2.692659809359685e-5
allele num: 111414
alternate allele: AGGTC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-21_257-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-21_585-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-21_*11-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-21_-92-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-21_290-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-21_290-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-21_290-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-21_194-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-21_244-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-21_-92-20insGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-21_-219-20insGACC
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11081
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-87516559-AAAAAAAAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516559
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516549
    reference: chr 5
allele count: 3
allele frequency: 2.694546238413451e-5
allele num: 111336
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: AAAAAAAAAAG
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-87516560-AAAAAAAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516560
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516551
    reference: chr 5
allele count: 3
allele frequency: 2.700124205713463e-5
allele num: 111106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11085
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: AAAAAAAAAG
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

5-87516561-AAAAAAAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516561
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516553
    reference: chr 5
allele count: 2
allele frequency: 1.804565550843634e-5
allele num: 110830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10984
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: AAAAAAAAG
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

5-87516568-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516568
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516567
    reference: chr 5
allele count: 7
allele frequency: 6.841950933437591e-5
allele num: 102310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-33delC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-33delC
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: AG
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

5-87516568-AGGTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516568
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516564
    reference: chr 5
allele count: 6
allele frequency: 5.864529371517936e-5
allele num: 102310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-36_-92-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-36_257-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-36_244-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-36_290-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-36_-92-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-36_194-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-36_290-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-36_-219-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-36_*11-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-36_585-33delGACC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-36_290-33delGACC
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
reference allele: AGGTC
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

5-87516568-AGGTCAAAAAAAACAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516568
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516553
    reference: chr 5
allele count: 3
allele frequency: 2.932264685758968e-5
allele num: 102310
alternate allele: A
canonical: false
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6187
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7530
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10616
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 802
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6162
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: AGGTCAAAAAAAACAG
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

5-87516569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516569
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516569
    reference: chr 5
allele count: 2
allele frequency: 2.260346737189485e-5
allele num: 88482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-33C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-33C>T
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

5-87516569-GGTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516569
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516566
    reference: chr 5
allele count: 1
allele frequency: 1.130173368594742e-5
allele num: 88482
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-36_290-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-36_-92-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-36_244-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-36_*11-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-36_290-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-36_585-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-36_290-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-36_-92-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-36_-219-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-36_257-34delGAC
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-36_194-34delGAC
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: GGTC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

5-87516571-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516571
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516571
    reference: chr 5
allele count: 1
allele frequency: 1.099070186622118e-5
allele num: 90986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-35A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-35A>T
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-87516572-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516572
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516572
    reference: chr 5
allele count: 4
allele frequency: 4.582531390340024e-5
allele num: 87288
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-36G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-36G>T
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/5-87516572-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516572
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516573
    reference: chr 5
allele count: 2333
allele frequency: 2.672761433415819e-2
allele num: 87288
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-37dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-37dupT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 1.75e1
  variant carriers: 635
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 1.25e1
  variant carriers: 811
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 2.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 7.5e0
  variant carriers: 595
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.5e0
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 2.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 4.75e1
  variant carriers: 10
num of homozygotes: 26
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-87516572-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516572
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516574
    reference: chr 5
allele count: 5
allele frequency: 5.72816423792503e-5
allele num: 87288
alternate allele: CAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-38_-92-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-38_244-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-38_*11-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-38_194-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-38_-219-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-38_290-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-38_290-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-38_-92-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-38_257-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-38_585-37dupTT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-38_290-37dupTT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6469
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/5-87516572-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516572
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516571
    reference: chr 5
allele count: 7
allele frequency: 8.019429933095042e-5
allele num: 87288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-37delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-37delT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9702
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3812
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: CA
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

5-87516575-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516575
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516575
    reference: chr 5
allele count: 1
allele frequency: 1.000280078421958e-5
allele num: 99972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-39T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-39T>A
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10822
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

5-87516577-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516577
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516577
    reference: chr 5
allele count: 1
allele frequency: 1.012637718729747e-5
allele num: 98752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-41T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-41T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13804
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

5-87516578-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516578
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516578
    reference: chr 5
allele count: 3
allele frequency: 3.083184312758217e-5
allele num: 97302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-42T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-42T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-87516579-A-AAGGTCAAAAAAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516579
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516591
    reference: chr 5
allele count: 2
allele frequency: 2.059053658938352e-5
allele num: 97132
alternate allele: AAGGTCAAAAAAT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-87516579-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516579
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516577
    reference: chr 5
allele count: 2
allele frequency: 2.059053658938352e-5
allele num: 97132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-45_-92-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-45_*11-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-45_585-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-45_-92-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-45_194-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-45_244-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-45_290-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-45_-219-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-45_257-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-45_290-44delGT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-45_290-44delGT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13473
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: AAC
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/5-87516580-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516580
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516580
    reference: chr 5
allele count: 1
allele frequency: 1.041384624997397e-5
allele num: 96026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-44T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-44T>G
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

5-87516580-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516580
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516580
    reference: chr 5
allele count: 1
allele frequency: 1.041384624997397e-5
allele num: 96026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-44T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-44T>A
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/5-87516580-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516580
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516579
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 96026
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-45delG
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-45delG
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AC
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/5-87516581-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516581
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516581
    reference: chr 5
allele count: 2420
allele frequency: 2.646602069161618e-2
allele num: 91438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-45G>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-45G>T
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 2.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 3.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12345
  bin: 1.75e1
  variant carriers: 656
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 8086
  bin: 7.5e0
  variant carriers: 524
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 2.75e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 2.25e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 1.25e1
  variant carriers: 797
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 9.25e1
  variant carriers: 20
num of homozygotes: 37
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-87516583-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516583
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516583
    reference: chr 5
allele count: 2373
allele frequency: 2.598270009854374e-2
allele num: 91330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-47C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-47C>T
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7372
  bin: 2.25e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 13251
  bin: 1.25e1
  variant carriers: 805
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 7.5e0
  variant carriers: 562
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.5e0
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 12012
  bin: 1.75e1
  variant carriers: 641
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 2.75e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 3.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 5105
  bin: 3.25e1
  variant carriers: 18
num of homozygotes: 36
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

5-87516584-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87516584
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87516584
    reference: chr 5
allele count: 2
allele frequency: 2.25687783520278e-5
allele num: 88618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.585-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-48A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.*11-48A>T
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8955
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13148
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-87517509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87517509
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87517509
    reference: chr 5
allele count: 1
allele frequency: 9.293680297397769e-5
allele num: 10760
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-973G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.414-221G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-973G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.358G>A
  hgvsp: ENSP00000421805.1:p.Ala120Thr
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-973G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-973G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-973G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-973G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-973G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-973G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-973G>A
  variant of: http://identifiers.org/hgnc/28483
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala120Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

5-87517511-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87517511
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87517511
    reference: chr 5
allele count: 1
allele frequency: 9.293680297397769e-5
allele num: 10760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-975A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.414-223A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-975A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-975A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-975A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-975A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.356A>G
  hgvsp: ENSP00000421805.1:p.Tyr119Cys
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-975A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-975A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-975A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-975A>G
  variant of: http://identifiers.org/hgnc/28483
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr119Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

5-87517531-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87517531
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87517531
    reference: chr 5
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-995A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.336A>G
  hgvsp: ENST00000511087.1:c.336A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-995A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-995A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-995A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-995A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-995A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.414-243A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-995A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-995A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-995A>G
  variant of: http://identifiers.org/hgnc/28483
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val112Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

5-87517537-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87517537
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87517537
    reference: chr 5
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-1001T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.414-249T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-1001T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.330T>C
  hgvsp: ENST00000511087.1:c.330T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-1001T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-1001T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-1001T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-1001T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-1001T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-1001T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-1001T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr110Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-87517540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87517540
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87517540
    reference: chr 5
allele count: 1
allele frequency: 9.291953168556031e-5
allele num: 10762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.414-252C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-1004C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-1004C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-1004C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-1004C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-1004C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-1004C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-1004C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-1004C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.327C>T
  hgvsp: ENST00000511087.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-1004C>T
  variant of: http://identifiers.org/hgnc/28483
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr109Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

5-87517580-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87517580
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87517580
    reference: chr 5
allele count: 1
allele frequency: 9.30925339787749e-5
allele num: 10742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-1044T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.290-3T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-1044T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.414-292T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-1044T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-1044T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-1044T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-1044T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-1044T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-1044T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-1044T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.290-3T>C
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-87517611-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87517611
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87517611
    reference: chr 5
allele count: 1
allele frequency: 9.33184023889511e-5
allele num: 10716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.290-1075T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.194-1075T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.244-1075T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.290-1075T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.290-34T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.290-1075T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-219-1075T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.257-1075T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.414-323T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-92-1075T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-92-1075T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-87521535-CTATAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521535
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521530
    reference: chr 5
allele count: 5
allele frequency: 4.243833709619922e-5
allele num: 117818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.413+46_413+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-220+46_-220+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-93+46_-93+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.289+46_289+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.289+46_289+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.243+46_243+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.289+46_289+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.289+46_289+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.256+46_256+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-93+46_-93+50delTTATA
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2722_193+2726delTTATA
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12698
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: CTATAA
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

5-87521537-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521537
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521537
    reference: chr 5
allele count: 12
allele frequency: 1.017535528948886e-4
allele num: 117932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.413+49T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.289+49T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-93+49T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2725T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-220+49T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.256+49T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.243+49T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.289+49T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.289+49T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-93+49T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.289+49T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13083
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13982
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

5-87521548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521548
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521548
    reference: chr 5
allele count: 10
allele frequency: 8.427013634908062e-5
allele num: 118666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.289+38G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-93+38G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2714G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.243+38G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.256+38G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-93+38G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.289+38G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.413+38G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.289+38G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.289+38G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-220+38G>A
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7554
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13883
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

5-87521552-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521552
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521552
    reference: chr 5
allele count: 1
allele frequency: 8.401666890711118e-6
allele num: 119024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.256+34C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.413+34C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-220+34C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.289+34C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.289+34C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.289+34C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.289+34C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-93+34C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-93+34C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2710C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.243+34C>A
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

5-87521558-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521558
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521558
    reference: chr 5
allele count: 3
allele frequency: 2.504591751544498e-5
allele num: 119780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.413+28A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.289+28A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.289+28A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.256+28A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-93+28A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.289+28A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2704A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-93+28A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.243+28A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.289+28A>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-220+28A>T
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

5-87521558-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521558
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521558
    reference: chr 5
allele count: 5
allele frequency: 4.174319585907497e-5
allele num: 119780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-220+28A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-93+28A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.243+28A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.289+28A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.289+28A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.413+28A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2704A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.256+28A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.289+28A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-93+28A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.289+28A>G
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30294
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

5-87521560-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521560
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521560
    reference: chr 5
allele count: 10
allele frequency: 8.335139280177371e-5
allele num: 119974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.256+26C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2702C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-93+26C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-220+26C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.413+26C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.289+26C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.289+26C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.243+26C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.289+26C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.289+26C>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-93+26C>A
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24764
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30711
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-87521579-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521579
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521579
    reference: chr 5
allele count: 16
allele frequency: 1.322860686233981e-4
allele num: 120950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-93+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.289+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.256+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.289+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.413+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.289+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.289+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.243+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-220+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-93+7G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2683G>A
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.289+7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

5-87521588-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521588
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521588
    reference: chr 5
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2674T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-95T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.287T>C
  hgvsp: ENSP00000421805.1:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-95T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.254T>C
  hgvsp: ENSP00000421498.1:p.Leu85Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.287T>C
  hgvsp: ENSP00000426354.1:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.287T>C
  hgvsp: ENSP00000296595.6:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-222T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.241T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.287T>C
  hgvsp: ENSP00000427312.1:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.411T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu96Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

5-87521613-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521613
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521613
    reference: chr 5
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-120A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.262A>G
  hgvsp: ENSP00000296595.6:p.Lys88Glu
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-120A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.262A>G
  hgvsp: ENSP00000427312.1:p.Lys88Glu
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.262A>G
  hgvsp: ENSP00000426354.1:p.Lys88Glu
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2649A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.262A>G
  hgvsp: ENSP00000421805.1:p.Lys88Glu
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.229A>G
  hgvsp: ENSP00000421498.1:p.Lys77Glu
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.216A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.386A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-247A>G
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys88Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

5-87521624-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521624
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521624
    reference: chr 5
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.375A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.251A>G
  hgvsp: ENSP00000426354.1:p.His84Arg
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.205A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.251A>G
  hgvsp: ENSP00000427312.1:p.His84Arg
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.218A>G
  hgvsp: ENSP00000421498.1:p.His73Arg
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2638A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-131A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-258A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.251A>G
  hgvsp: ENSP00000421805.1:p.His84Arg
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-131A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.251A>G
  hgvsp: ENSP00000296595.6:p.His84Arg
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His84Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

5-87521636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521636
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521636
    reference: chr 5
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.206A>G
  hgvsp: ENSP00000421498.1:p.Asp69Gly
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.239A>G
  hgvsp: ENSP00000296595.6:p.Asp80Gly
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.239A>G
  hgvsp: ENSP00000427312.1:p.Asp80Gly
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-143A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-270A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.239A>G
  hgvsp: ENSP00000426354.1:p.Asp80Gly
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-143A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.239A>G
  hgvsp: ENSP00000421805.1:p.Asp80Gly
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.363A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2626A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.193A>G
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp80Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

5-87521639-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521639
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521639
    reference: chr 5
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2623A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.190A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-146A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.236A>G
  hgvsp: ENSP00000427312.1:p.Lys79Arg
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.360A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.236A>G
  hgvsp: ENSP00000426354.1:p.Lys79Arg
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.236A>G
  hgvsp: ENSP00000421805.1:p.Lys79Arg
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.236A>G
  hgvsp: ENSP00000296595.6:p.Lys79Arg
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.203A>G
  hgvsp: ENSP00000421498.1:p.Lys68Arg
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-146A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-273A>G
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys79Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-87521643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521643
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521643
    reference: chr 5
allele count: 18
allele frequency: 1.484878982362937e-4
allele num: 121222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-150C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.232C>T
  hgvsp: ENSP00000421805.1:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-150C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.232C>T
  hgvsp: ENSP00000427312.1:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.232C>T
  hgvsp: ENSP00000426354.1:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-277C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.199C>T
  hgvsp: ENSP00000421498.1:p.Pro67Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.356C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2619C>T
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.232C>T
  hgvsp: ENSP00000296595.6:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.186C>T
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 25520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro78Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

5-87521658-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521658
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521658
    reference: chr 5
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.217A>C
  hgvsp: ENSP00000421805.1:p.Lys73Gln
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2604A>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.217A>C
  hgvsp: ENSP00000296595.6:p.Lys73Gln
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.341A>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.217A>C
  hgvsp: ENSP00000427312.1:p.Lys73Gln
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.217A>C
  hgvsp: ENSP00000426354.1:p.Lys73Gln
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.184A>C
  hgvsp: ENSP00000421498.1:p.Lys62Gln
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.171A>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-165A>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-165A>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-292A>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys73Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

5-87521677-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521677
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521677
    reference: chr 5
allele count: 1
allele frequency: 8.274720728175424e-6
allele num: 120850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-311T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.322T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.198T>C
  hgvsp: ENST00000511087.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.198T>C
  hgvsp: ENST00000296595.6:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.198T>C
  hgvsp: ENST00000507872.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.152T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.165T>C
  hgvsp: ENST00000512429.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2585T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-184T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.198T>C
  hgvsp: ENST00000514135.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-184T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr66Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

5-87521678-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521678
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521678
    reference: chr 5
allele count: 1
allele frequency: 8.274857672448034e-6
allele num: 120848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.197A>G
  hgvsp: ENSP00000426354.1:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-185A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.197A>G
  hgvsp: ENSP00000421805.1:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-312A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-185A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.197A>G
  hgvsp: ENSP00000296595.6:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.151A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.164A>G
  hgvsp: ENSP00000421498.1:p.Tyr55Cys
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.321A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.197A>G
  hgvsp: ENSP00000427312.1:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2584A>G
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr66Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/5-87521688-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521688
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521688
    reference: chr 5
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-5T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-5T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-5T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-5T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-5T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-5T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-5T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2574T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-5T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-5T>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-5T>G
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.192-5T>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-87521705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521705
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521705
    reference: chr 5
allele count: 1
allele frequency: 8.337085021593051e-6
allele num: 119946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2557G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-22G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-22G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-22G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-22G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-22G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-22G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-22G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-22G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-22G>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-22G>A
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

5-87521707-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521707
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521707
    reference: chr 5
allele count: 1
allele frequency: 8.342649291709075e-6
allele num: 119866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-24G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2555G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-24G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-24G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-24G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-24G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-24G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-24G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-24G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-24G>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-24G>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9699
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-87521707-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521707
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521708
    reference: chr 5
allele count: 1
allele frequency: 8.342649291709075e-6
allele num: 119866
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-25dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2554dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-25dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-25dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-25dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-25dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-25dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-25dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-25dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-25dupT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-25dupT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-87521707-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521707
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521706
    reference: chr 5
allele count: 1
allele frequency: 8.342649291709075e-6
allele num: 119866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-25delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-25delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-25delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-25delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-25delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-25delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-25delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2554delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-25delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-25delT
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-25delT
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: CA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

5-87521709-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521709
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521709
    reference: chr 5
allele count: 1
allele frequency: 8.343484572897024e-6
allele num: 119854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2553T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-26T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-26T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-26T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-26T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-26T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-26T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-26T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-26T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-26T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-26T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21687
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

5-87521711-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521711
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521711
    reference: chr 5
allele count: 1
allele frequency: 8.343902276216541e-6
allele num: 119848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-28T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-28T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-28T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2551T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-28T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-28T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-28T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-28T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-28T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-28T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-28T>A
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

5-87521713-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521713
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521713
    reference: chr 5
allele count: 1
allele frequency: 8.350172848577966e-6
allele num: 119758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2549T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-30T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-30T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-30T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-30T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-30T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-30T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-30T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-30T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-30T>A
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-30T>A
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20725
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

5-87521719-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521719
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521719
    reference: chr 5
allele count: 1
allele frequency: 8.365960579593749e-6
allele num: 119532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-36A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-36A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-36A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-36A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-36A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2543A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-36A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-36A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-36A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-36A>G
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-36A>G
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

5-87521726-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87521726
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 87521726
    reference: chr 5
allele count: 1
allele frequency: 8.407600470825626e-6
allele num: 118940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000423380
  ensembl transcript: ENST00000510089
  gene symbol: TMEM161B
  hgvsc: ENST00000510089.1:c.-190-43T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000515477
  gene symbol: TMEM161B
  hgvsc: ENST00000515477.1:n.316-43T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000427312
  ensembl transcript: ENST00000507872
  gene symbol: TMEM161B
  hgvsc: ENST00000507872.1:c.192-43T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000513487
  gene symbol: TMEM161B
  hgvsc: ENST00000513487.1:n.146-43T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421805
  ensembl transcript: ENST00000511087
  gene symbol: TMEM161B
  hgvsc: ENST00000511087.1:c.192-43T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421498
  ensembl transcript: ENST00000512429
  gene symbol: TMEM161B
  hgvsc: ENST00000512429.1:c.159-43T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl transcript: ENST00000503755
  gene symbol: TMEM161B
  hgvsc: ENST00000503755.1:n.193+2536T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000426354
  ensembl transcript: ENST00000514135
  gene symbol: TMEM161B
  hgvsc: ENST00000514135.1:c.192-43T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000421733
  ensembl transcript: ENST00000506536
  gene symbol: TMEM161B
  hgvsc: ENST00000506536.1:c.-317-43T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000296595
  ensembl transcript: ENST00000296595
  gene symbol: TMEM161B
  hgvsc: ENST00000296595.6:c.192-43T>C
  variant of: http://identifiers.org/hgnc/28483
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164180
  ensembl protein: ENSP00000424200
  ensembl transcript: ENST00000509387
  gene symbol: TMEM161B
  hgvsc: ENST00000509387.1:c.-190-43T>C
  variant of: http://identifiers.org/hgnc/28483
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 357
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 840
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15067
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5907
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7372
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 306
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9932
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5484
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2053
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 696
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 2.581755593803787e-3
allele num: 1162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.363512407962912e-4
allele num: 14668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

VQSLOD
type: SiteQuality
SIO_000300: -1.844e0

MQ
type: SiteQuality
SIO_000300: 5.706e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.81e-2

FS
type: SiteQuality
SIO_000300: 3.5445e1

DP
type: SiteQuality
SIO_000300: 2.482671e6

QD
type: SiteQuality
SIO_000300: 1.04e0

GenotypeDepth
all individuals: 2693
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 930
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3496
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5244
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 12453
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 15072
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 377
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3418
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3166
bin: 3.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 4.5662100456621e-4
allele num: 26280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 2.657218777679362e-3
allele num: 2258
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.660302174995849e-4
allele num: 12046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.928e0

FS
type: SiteQuality
SIO_000300: 4.6509e1

QD
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.34e-2

DP
type: SiteQuality
SIO_000300: 2.480924e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.81e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

GenotypeDepth
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2753
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1162
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2041
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2818
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10748
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 1059
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3767
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4189
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 15294
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 8519
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 2170
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 918
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.821054278116691e-5
allele num: 12786
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.567606136282554e-4
allele num: 5606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 6.2015503875969e-4
allele num: 32250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 3.496503496503497e-3
allele num: 2860
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 7.345739471106758e-4
allele num: 4084
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.708e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.610000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.187e0

FS
type: SiteQuality
SIO_000300: 4.9563e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.021e0

DP
type: SiteQuality
SIO_000300: 2.482286e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.63e-1

GenotypeDepth
all individuals: 386
bin: 8.25e1
variant carriers: 14

GenotypeDepth
all individuals: 1212
bin: 6.75e1
variant carriers: 29

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 66
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 750
bin: 9.75e1
variant carriers: 508

GenotypeQuality
all individuals: 46
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 53723
bin: 2.5e0
variant carriers: 56

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 205
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 283
bin: 1.25e1
variant carriers: 14

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 249
bin: 2.25e1
variant carriers: 15

GenotypeQuality
all individuals: 830
bin: 7.5e0
variant carriers: 18

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 46
bin: 7.25e1
variant carriers: 5

Other
type: Population
allele count: 6
allele frequency: 1.5e-1
allele num: 40
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 67
allele frequency: 2.233333333333333e-1
allele num: 300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 289
allele frequency: 1.508350730688935e-1
allele num: 1916
num of homozygotes: 0

East Asian
type: Population
allele count: 63
allele frequency: 2.540322580645161e-1
allele num: 248
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 1.45e-1
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 44
allele frequency: 2.716049382716049e-1
allele num: 162
num of homozygotes: 0

South Asian
type: Population
allele count: 123
allele frequency: 9.624413145539906e-2
allele num: 1278
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.789589e6

VQSLOD
type: SiteQuality
SIO_000300: -2.105e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.208e-1

FS
type: SiteQuality
SIO_000300: 7.019799999999999e1

QD
type: SiteQuality
SIO_000300: 9.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

GenotypeQuality
all individuals: 46
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 20

GenotypeQuality
all individuals: 53723
bin: 2.5e0
variant carriers: 48

GenotypeQuality
all individuals: 830
bin: 7.5e0
variant carriers: 35

GenotypeQuality
all individuals: 205
bin: 1.75e1
variant carriers: 28

GenotypeQuality
all individuals: 66
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 13

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 283
bin: 1.25e1
variant carriers: 29

GenotypeQuality
all individuals: 750
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 46
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 6

East Asian
type: Population
allele count: 5
allele frequency: 2.016129032258064e-2
allele num: 248
num of homozygotes: 2

African
type: Population
allele count: 13
allele frequency: 6.5e-2
allele num: 200
num of homozygotes: 6

Other
type: Population
allele count: 1
allele frequency: 2.5e-2
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 99
allele frequency: 5.167014613778706e-2
allele num: 1916
num of homozygotes: 34

Latino
type: Population
allele count: 6
allele frequency: 3.703703703703703e-2
allele num: 162
num of homozygotes: 3

South Asian
type: Population
allele count: 65
allele frequency: 5.086071987480438e-2
allele num: 1278
num of homozygotes: 13

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.333333333333334e-3
allele num: 300
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.019799999999999e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.208e-1

QD
type: SiteQuality
SIO_000300: 9.1e0

DP
type: SiteQuality
SIO_000300: 2.789589e6

VQSLOD
type: SiteQuality
SIO_000300: -2.105e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.604e1

GenotypeQuality
all individuals: 283
bin: 1.25e1
variant carriers: 38

GenotypeQuality
all individuals: 205
bin: 1.75e1
variant carriers: 26

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 53723
bin: 2.5e0
variant carriers: 141

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 12

GenotypeQuality
all individuals: 830
bin: 7.5e0
variant carriers: 54

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 22

GenotypeQuality
all individuals: 750
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 46
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 249
bin: 2.25e1
variant carriers: 17

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 18

GenotypeQuality
all individuals: 46
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 6

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.666666666666667e-2
allele num: 300
num of homozygotes: 1

East Asian
type: Population
allele count: 9
allele frequency: 3.629032258064516e-2
allele num: 248
num of homozygotes: 2

South Asian
type: Population
allele count: 120
allele frequency: 9.389671361502347e-2
allele num: 1278
num of homozygotes: 38

Other
type: Population
allele count: 2
allele frequency: 5.0e-2
allele num: 40
num of homozygotes: 1

Latino
type: Population
allele count: 7
allele frequency: 4.320987654320987e-2
allele num: 162
num of homozygotes: 3

African
type: Population
allele count: 11
allele frequency: 5.5e-2
allele num: 200
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 110
allele frequency: 5.741127348643006e-2
allele num: 1916
num of homozygotes: 40

DP
type: SiteQuality
SIO_000300: 2.789589e6

VQSLOD
type: SiteQuality
SIO_000300: -2.105e-1

FS
type: SiteQuality
SIO_000300: 7.019799999999999e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.208e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

QD
type: SiteQuality
SIO_000300: 9.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 23

GenotypeQuality
all individuals: 205
bin: 1.75e1
variant carriers: 29

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 28

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 53723
bin: 2.5e0
variant carriers: 92

GenotypeQuality
all individuals: 830
bin: 7.5e0
variant carriers: 55

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 15

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 21

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 14

GenotypeQuality
all individuals: 66
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 46
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 249
bin: 2.25e1
variant carriers: 35

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 11

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 750
bin: 9.75e1
variant carriers: 74

GenotypeQuality
all individuals: 46
bin: 7.75e1
variant carriers: 10

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 21

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 12

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 4

East Asian
type: Population
allele count: 13
allele frequency: 5.241935483870968e-2
allele num: 248
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 7
allele frequency: 2.333333333333333e-2
allele num: 300
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 9.0e-2
allele num: 200
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 131
allele frequency: 6.837160751565761e-2
allele num: 1916
num of homozygotes: 42

South Asian
type: Population
allele count: 200
allele frequency: 1.564945226917058e-1
allele num: 1278
num of homozygotes: 63

Latino
type: Population
allele count: 3
allele frequency: 1.851851851851852e-2
allele num: 162
num of homozygotes: 1

Other
type: Population
allele count: 5
allele frequency: 1.25e-1
allele num: 40
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 5.604e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.208e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

QD
type: SiteQuality
SIO_000300: 9.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.789589e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.019799999999999e1

VQSLOD
type: SiteQuality
SIO_000300: -2.105e-1

GenotypeQuality
all individuals: 750
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 830
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 46
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 66
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 205
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 249
bin: 2.25e1
variant carriers: 13

GenotypeQuality
all individuals: 283
bin: 1.25e1
variant carriers: 24

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 7.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 9
allele frequency: 3.0e-2
allele num: 300
num of homozygotes: 0

South Asian
type: Population
allele count: 102
allele frequency: 7.981220657276995e-2
allele num: 1278
num of homozygotes: 42

Other
type: Population
allele count: 4
allele frequency: 1.0e-1
allele num: 40
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 62
allele frequency: 3.235908141962422e-2
allele num: 1916
num of homozygotes: 24

East Asian
type: Population
allele count: 1
allele frequency: 4.032258064516129e-3
allele num: 248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 6.0e-2
allele num: 200
num of homozygotes: 5

VQSLOD
type: SiteQuality
SIO_000300: -2.105e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

FS
type: SiteQuality
SIO_000300: 7.019799999999999e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.789589e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.208e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.1e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 53723
bin: 2.5e0
variant carriers: 717

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 249
bin: 2.25e1
variant carriers: 11

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 750
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 136
bin: 4.75e1
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GenotypeQuality
all individuals: 205
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 46
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 66
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 46
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.333333333333334e-3
allele num: 300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 1.304801670146138e-2
allele num: 1916
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.694835680751174e-3
allele num: 1278
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.208e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.604e1

DP
type: SiteQuality
SIO_000300: 2.789589e6

FS
type: SiteQuality
SIO_000300: 7.019799999999999e1

VQSLOD
type: SiteQuality
SIO_000300: -2.105e-1

QD
type: SiteQuality
SIO_000300: 9.1e0

GenotypeQuality
all individuals: 917
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2260
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
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variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 594
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variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.011359080582654e-5
allele num: 59864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.965969e6

QD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.388e-1

MQ
type: SiteQuality
SIO_000300: 4.283e1

MQRankSum
type: SiteQuality
SIO_000300: -2.216e0

FS
type: SiteQuality
SIO_000300: 3.186e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.708e0

GenotypeQuality
all individuals: 1638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23429
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11571
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
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variant carriers: 0

GenotypeQuality
all individuals: 6242
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variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.683109584764284e-4
allele num: 6406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59814
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.473e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.832e-1

MQ
type: SiteQuality
SIO_000300: 4.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.958e0

DP
type: SiteQuality
SIO_000300: 1.967202e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 1677
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
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variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 2.75e1
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GenotypeQuality
all individuals: 5709
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GenotypeQuality
all individuals: 215
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variant carriers: 0

GenotypeQuality
all individuals: 234
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variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
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variant carriers: 0

GenotypeQuality
all individuals: 134
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GenotypeQuality
all individuals: 1548
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GenotypeQuality
all individuals: 2100
bin: 3.25e1
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GenotypeQuality
all individuals: 6234
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1001
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.690431519699812e-4
allele num: 6396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.021e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.63e0

DP
type: SiteQuality
SIO_000300: 1.964845e6

FS
type: SiteQuality
SIO_000300: 3.539e0

VQSLOD
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 4.07e0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
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GenotypeQuality
all individuals: 1626
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GenotypeQuality
all individuals: 346
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GenotypeQuality
all individuals: 867
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GenotypeQuality
all individuals: 1733
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GenotypeQuality
all individuals: 1547
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GenotypeQuality
all individuals: 6234
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variant carriers: 2

GenotypeQuality
all individuals: 1002
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GenotypeQuality
all individuals: 234
bin: 4.25e1
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GenotypeQuality
all individuals: 148
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GenotypeQuality
all individuals: 518
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GenotypeQuality
all individuals: 262
bin: 2.5e0
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GenotypeQuality
all individuals: 2654
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GenotypeQuality
all individuals: 5699
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22364
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GenotypeQuality
all individuals: 589
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.566906925728612e-4
allele num: 6382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.683728448275862e-5
allele num: 59392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.125e1

FS
type: SiteQuality
SIO_000300: 8.154999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.447e0

DP
type: SiteQuality
SIO_000300: 1.959952e6

QD
type: SiteQuality
SIO_000300: 4.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
all individuals: 13606
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GenotypeQuality
all individuals: 6187
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variant carriers: 6

GenotypeQuality
all individuals: 2568
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GenotypeQuality
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GenotypeQuality
all individuals: 1156
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GenotypeQuality
all individuals: 471
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GenotypeQuality
all individuals: 12367
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GenotypeQuality
all individuals: 960
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GenotypeQuality
all individuals: 804
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GenotypeQuality
all individuals: 3629
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GenotypeQuality
all individuals: 2050
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GenotypeQuality
all individuals: 534
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GenotypeQuality
all individuals: 3560
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GenotypeQuality
all individuals: 2112
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GenotypeQuality
all individuals: 3889
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GenotypeQuality
all individuals: 1382
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GenotypeQuality
all individuals: 970
bin: 4.75e1
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GenotypeQuality
all individuals: 1373
bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.245699448231094e-4
allele num: 6162
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.884185403843738e-4
allele num: 15922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.773727310464546e-5
allele num: 52998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.68e0

MQRankSum
type: SiteQuality
SIO_000300: -1.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

DP
type: SiteQuality
SIO_000300: 1.86124e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.732e0

FS
type: SiteQuality
SIO_000300: 1.4728e1

VQSLOD
type: SiteQuality
SIO_000300: -1.998e0

MQ
type: SiteQuality
SIO_000300: 5.664e1

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 3629
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3560
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6187
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 804
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 12367
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1156
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2112
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.660590965696819e-5
allele num: 52998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.246882793017456e-3
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.256123602562492e-4
allele num: 15922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.4728e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

MQ
type: SiteQuality
SIO_000300: 5.664e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQRankSum
type: SiteQuality
SIO_000300: -1.219e0

DP
type: SiteQuality
SIO_000300: 1.86124e6

QD
type: SiteQuality
SIO_000300: 2.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.998e0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.660590965696819e-5
allele num: 52998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.17e-2

DP
type: SiteQuality
SIO_000300: 1.86124e6

MQ
type: SiteQuality
SIO_000300: 5.664e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.4728e1

VQSLOD
type: SiteQuality
SIO_000300: -1.998e0

MQRankSum
type: SiteQuality
SIO_000300: -1.219e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.732e0

QD
type: SiteQuality
SIO_000300: 2.68e0

GenotypeQuality
all individuals: 1895
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6742
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11858
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4959
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6936
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.436781609195402e-4
allele num: 13920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.523e0

QD
type: SiteQuality
SIO_000300: 3.02e0

VQSLOD
type: SiteQuality
SIO_000300: -7.86e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.77e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.988e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.313e0

DP
type: SiteQuality
SIO_000300: 1.826312e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.419e0

GenotypeQuality
all individuals: 1472
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6742
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
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variant carriers: 0

GenotypeQuality
all individuals: 11858
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45354
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.183908045977011e-5
allele num: 13920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.77e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.86e-2

MQ
type: SiteQuality
SIO_000300: 4.988e1

DP
type: SiteQuality
SIO_000300: 1.826312e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 3.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.313e0

MQRankSum
type: SiteQuality
SIO_000300: -1.523e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.419e0

GenotypeQuality
all individuals: 1000
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1447
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5316
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3256
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
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variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5004
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12703
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3868
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.040149781568546e-4
allele num: 9614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46516
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.13e-2

MQ
type: SiteQuality
SIO_000300: 5.05e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.739575e6

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

VQSLOD
type: SiteQuality
SIO_000300: -1.962e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.184e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6469
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9539
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7244
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2280
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3391
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12037
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.255096518130976e-5
allele num: 44344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.476232654266312e-4
allele num: 6774
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.276961141027506e-5
allele num: 13742
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.427347987439338e-4
allele num: 7006
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

DP
type: SiteQuality
SIO_000300: 1.64116e6

MQRankSum
type: SiteQuality
SIO_000300: -1.026e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.037e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 6469
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 3812
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 3810
bin: 3.25e1
variant carriers: 19

GenotypeQuality
all individuals: 2130
bin: 6.75e1
variant carriers: 34

GenotypeQuality
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bin: 8.75e1
variant carriers: 17

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 12037
bin: 2.25e1
variant carriers: 16

GenotypeQuality
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bin: 7.5e0
variant carriers: 13

GenotypeQuality
all individuals: 2280
bin: 3.75e1
variant carriers: 16

GenotypeQuality
all individuals: 437
bin: 9.25e1
variant carriers: 22

GenotypeQuality
all individuals: 1023
bin: 4.25e1
variant carriers: 14

GenotypeQuality
all individuals: 9539
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 774
bin: 7.25e1
variant carriers: 34

GenotypeQuality
all individuals: 7244
bin: 9.75e1
variant carriers: 2643

GenotypeQuality
all individuals: 1334
bin: 1.75e1
variant carriers: 13

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 18

GenotypeQuality
all individuals: 1654
bin: 1.25e1
variant carriers: 22

GenotypeQuality
all individuals: 759
bin: 7.75e1
variant carriers: 21

European (Non-Finnish)
type: Population
allele count: 1725
allele frequency: 3.890041493775934e-2
allele num: 44344
num of homozygotes: 22

East Asian
type: Population
allele count: 1
allele frequency: 1.476232654266312e-4
allele num: 6774
num of homozygotes: 0

African
type: Population
allele count: 66
allele frequency: 9.420496717099628e-3
allele num: 7006
num of homozygotes: 0

Latino
type: Population
allele count: 197
allele frequency: 2.135732870771899e-2
allele num: 9224
num of homozygotes: 3

South Asian
type: Population
allele count: 171
allele frequency: 1.244360355115704e-2
allele num: 13742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 154
allele frequency: 2.8e-2
allele num: 5500
num of homozygotes: 1

Other
type: Population
allele count: 19
allele frequency: 2.722063037249284e-2
allele num: 698
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.414e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 1.64116e6

MQRankSum
type: SiteQuality
SIO_000300: -1.026e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.037e-1

GenotypeQuality
all individuals: 774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9539
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2280
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
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GenotypeQuality
all individuals: 1023
bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3391
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12037
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7244
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 437
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.252385082393755e-4
allele num: 9224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.255096518130976e-5
allele num: 44344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.276961141027506e-5
allele num: 13742
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.037e-1

DP
type: SiteQuality
SIO_000300: 1.64116e6

MQRankSum
type: SiteQuality
SIO_000300: -1.026e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeQuality
all individuals: 602
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12037
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13742
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.427347987439338e-4
allele num: 7006
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.084128360797918e-4
allele num: 9224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.952465308532625e-4
allele num: 6774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.765289554392928e-5
allele num: 44344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.177e1

DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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SIO_000300: 2.09e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.932e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.037e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.94924174496121e-5
allele num: 51302
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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BaseQRankSum
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MQ
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SIO_000300: 5.662e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -9.2e-3

ReadPosRankSum
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SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
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SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 2.47e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.983812093318521e-5
allele num: 50408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

QD
type: SiteQuality
SIO_000300: 1.008e1

InbreedingCoeff
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SIO_000300: -8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

DP
type: SiteQuality
SIO_000300: 1.512225e6

MQ
type: SiteQuality
SIO_000300: 5.766e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 673
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GenotypeQuality
all individuals: 373
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.854059609455293e-4
allele num: 7784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

MQ
type: SiteQuality
SIO_000300: 5.642e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.488714e6

VQSLOD
type: SiteQuality
SIO_000300: -7.227e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ClippingRankSum
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.053506282934739e-5
allele num: 49340
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.001e0

FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.521e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.18e-2

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.485122e6

ReadPosRankSum
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SIO_000300: -1.065e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.026753141467369e-5
allele num: 49340
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15586
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.18e-2

MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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QD
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.521e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.059138456469813e-5
allele num: 48564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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DP
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6943
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.643115346697338e-4
allele num: 6086
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.476724e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.38e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 9.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 5.465e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6943
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GenotypeQuality
all individuals: 4648
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.38e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

MQ
type: SiteQuality
SIO_000300: 5.465e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.75e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 1.476724e6

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 2686

GenotypeQuality
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variant carriers: 31

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2007
bin: 1.75e1
variant carriers: 10

GenotypeQuality
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GenotypeQuality
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variant carriers: 20

GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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variant carriers: 30

GenotypeQuality
all individuals: 862
bin: 7.75e1
variant carriers: 22

GenotypeQuality
all individuals: 737
bin: 5.25e1
variant carriers: 12

Latino
type: Population
allele count: 199
allele frequency: 2.056209960735689e-2
allele num: 9678
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 1803
allele frequency: 3.942017578381215e-2
allele num: 45738
num of homozygotes: 29

African
type: Population
allele count: 67
allele frequency: 9.153005464480874e-3
allele num: 7320
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.446759259259259e-4
allele num: 6912
num of homozygotes: 0

South Asian
type: Population
allele count: 175
allele frequency: 1.161555821054029e-2
allele num: 15066
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 155
allele frequency: 2.59805564867583e-2
allele num: 5966
num of homozygotes: 1

Other
type: Population
allele count: 20
allele frequency: 2.638522427440633e-2
allele num: 758
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

FS
type: SiteQuality
SIO_000300: 3.593e0

DP
type: SiteQuality
SIO_000300: 1.464549e6

MQRankSum
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SIO_000300: -1.031e0

MQ
type: SiteQuality
SIO_000300: 5.471e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.573e0

QD
type: SiteQuality
SIO_000300: 1.639e1

VQSLOD
type: SiteQuality
SIO_000300: -8.352000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 1773
bin: 6.75e1
variant carriers: 31

GenotypeQuality
all individuals: 11451
bin: 2.25e1
variant carriers: 15

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 20

GenotypeQuality
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variant carriers: 16

GenotypeQuality
all individuals: 1900
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variant carriers: 6

GenotypeQuality
all individuals: 522
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variant carriers: 20

GenotypeQuality
all individuals: 449
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variant carriers: 14

GenotypeQuality
all individuals: 4186
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variant carriers: 10

GenotypeQuality
all individuals: 2602
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variant carriers: 9

GenotypeQuality
all individuals: 4786
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variant carriers: 14

GenotypeQuality
all individuals: 846
bin: 7.25e1
variant carriers: 29

GenotypeQuality
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variant carriers: 22

GenotypeQuality
all individuals: 3746
bin: 7.5e0
variant carriers: 12

GenotypeQuality
all individuals: 2510
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variant carriers: 10

GenotypeQuality
all individuals: 8133
bin: 9.75e1
variant carriers: 2686

GenotypeQuality
all individuals: 1097
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 674
bin: 8.25e1
variant carriers: 9

European (Finnish)
type: Population
allele count: 155
allele frequency: 2.605917955615333e-2
allele num: 5948
num of homozygotes: 1

Other
type: Population
allele count: 20
allele frequency: 2.666666666666667e-2
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.448435689455388e-4
allele num: 6904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1762
allele frequency: 3.867767143735183e-2
allele num: 45556
num of homozygotes: 28

African
type: Population
allele count: 65
allele frequency: 8.891928864569083e-3
allele num: 7310
num of homozygotes: 0

Latino
type: Population
allele count: 196
allele frequency: 2.018121911037891e-2
allele num: 9712
num of homozygotes: 4

South Asian
type: Population
allele count: 174
allele frequency: 1.148514851485148e-2
allele num: 15150
num of homozygotes: 3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.504e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 1.43725e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.031e0

QD
type: SiteQuality
SIO_000300: 1.681e1

VQSLOD
type: SiteQuality
SIO_000300: -7.285e-1

GenotypeQuality
all individuals: 4331
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5335
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variant carriers: 2

GenotypeQuality
all individuals: 3027
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1994
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 679
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1357
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variant carriers: 0

GenotypeQuality
all individuals: 825
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variant carriers: 0

GenotypeQuality
all individuals: 11466
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.588418830870882e-5
allele num: 43588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

DP
type: SiteQuality
SIO_000300: 1.437771e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

VQSLOD
type: SiteQuality
SIO_000300: -1.572e0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.23e-2

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 169
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2860
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1394
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GenotypeQuality
all individuals: 823
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.575757575757576e-3
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.51e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

FS
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.47e-2

DP
type: SiteQuality
SIO_000300: 1.51191e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.272e0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 41
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.668378576669112e-4
allele num: 2726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.41e-1

FS
type: SiteQuality
SIO_000300: 4.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.48e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
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SIO_000300: 1.51288e5

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.268e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 332
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332622601279318e-4
allele num: 7504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

QD
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ClippingRankSum
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SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

FS
type: SiteQuality
SIO_000300: 9.55e-1

MQRankSum
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SIO_000300: -1.104e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Other
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Latino
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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DP
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ClippingRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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African
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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QD
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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Latino
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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African
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Latino
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Other
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European (Finnish)
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MQ
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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MQ
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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European (Finnish)
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Latino
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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FS
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BaseQRankSum
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DP
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MQ
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African
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East Asian
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Other
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European (Finnish)
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.058e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.939e0

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 1.851839e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30294
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744287458573173e-4
allele num: 11466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520681265206813e-5
allele num: 65760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

DP
type: SiteQuality
SIO_000300: 1.870511e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 2698
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.082725060827251e-5
allele num: 65760
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

DP
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SIO_000300: 1.870511e6

QD
type: SiteQuality
SIO_000300: 1.41e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

FS
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 9710
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2695
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3492
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variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.517957436473481e-4
allele num: 65878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.284e0

FS
type: SiteQuality
SIO_000300: 1.583e0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

DP
type: SiteQuality
SIO_000300: 1.875843e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.139e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeDepth
all individuals: 900
bin: 5.25e1
variant carriers: 3

GenotypeDepth
all individuals: 208
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1802
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2695
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variant carriers: 0

GenotypeQuality
all individuals: 9714
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variant carriers: 16

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 1250
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3508
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 2564
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 32024
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variant carriers: 0

GenotypeQuality
all individuals: 6761
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.202790473899447e-4
allele num: 66512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.752291788570315e-5
allele num: 10254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.311258278145695e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819505094614265e-4
allele num: 16488
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

DP
type: SiteQuality
SIO_000300: 1.891837e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

QD
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SIO_000300: 1.254e1

BaseQRankSum
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SIO_000300: -3.782e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32170
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GenotypeQuality
all individuals: 6775
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.794e0

MQ
type: SiteQuality
SIO_000300: 5.783e1

VQSLOD
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SIO_000300: -1.617e0

BaseQRankSum
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MQRankSum
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SIO_000300: 1.11e0

DP
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SIO_000300: 1.89321e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

QD
type: SiteQuality
SIO_000300: 1.622e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-1

ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 2.587e0

MQ
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DP
type: SiteQuality
SIO_000300: 1.894391e6

VQSLOD
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.943e0

DP
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MQ
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
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SIO_000300: 1.13e0

BaseQRankSum
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SIO_000300: 1.68e0

MQ
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SIO_000300: 5.96e1

InbreedingCoeff
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.042e1

ClippingRankSum
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SIO_000300: -1.003e0

FS
type: SiteQuality
SIO_000300: 1.369e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 1.894353e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3509
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

BaseQRankSum
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SIO_000300: 2.25e0

MQ
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FS
type: SiteQuality
SIO_000300: 5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
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SIO_000300: 1.0e-4

DP
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SIO_000300: 1.894256e6

QD
type: SiteQuality
SIO_000300: 9.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 18

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 17
allele frequency: 2.550331543100603e-4
allele num: 66658
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

MQRankSum
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QD
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SIO_000300: 1.102e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.895544e6

VQSLOD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.927e1

FS
type: SiteQuality
SIO_000300: 7.93e-1

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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DP
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ReadPosRankSum
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.213e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.912e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.83671060397403e-5
allele num: 10166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
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ClippingRankSum
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SIO_000300: 4.46e-1

DP
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SIO_000300: 1.887914e6

MQ
type: SiteQuality
SIO_000300: 5.869e1

BaseQRankSum
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FS
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SIO_000300: 3.46e0

VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
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allele frequency: 9.838646202282565e-5
allele num: 10164
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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FS
type: SiteQuality
SIO_000300: 1.4935e1

BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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MQ
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BaseQRankSum
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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East Asian
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South Asian
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African
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Other
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FS
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

African
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

South Asian
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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MQ
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InbreedingCoeff
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FS
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.511624391571182e-5
allele num: 66154
num of homozygotes: 0

Other
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MQRankSum
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FS
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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Other
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African
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.691e1

DP
type: SiteQuality
SIO_000300: 1.802914e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 17159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9695
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2544
bin: 4.75e1
variant carriers: 0