http://identifiers.org/exac.variant/10-75520617-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75520617
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75520617
    reference: chr 10
allele count: 1
allele frequency: 8.376612497905846e-6
allele num: 119380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.561+10A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.987+10A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-7951A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+10A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-7951A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.987+10A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.987+10A>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43472
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

10-75520622-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75520622
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75520622
    reference: chr 10
allele count: 12
allele frequency: 1.006694518548346e-4
allele num: 119202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.561+15T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.987+15T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.987+15T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.987+15T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-7946T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-7946T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+15T>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43475
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-75520630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75520630
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75520630
    reference: chr 10
allele count: 4
allele frequency: 3.36683332491625e-5
allele num: 118806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.987+23C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-7938C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+23C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-7938C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.561+23C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.987+23C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.987+23C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

10-75520639-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75520639
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75520639
    reference: chr 10
allele count: 7
allele frequency: 5.903287287692489e-5
allele num: 118578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.987+32G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-7929G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.987+32G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+32G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.561+32G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-7929G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.987+32G>A
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

10-75520651-CCAGATAGGCAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75520651
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75520640
    reference: chr 10
allele count: 3
allele frequency: 2.544140843637104e-5
allele num: 117918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: CCAGATAGGCAG
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

10-75520654-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75520654
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75520654
    reference: chr 10
allele count: 2
allele frequency: 1.69618020218468e-5
allele num: 117912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+47G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-7914G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.987+47G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.987+47G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.987+47G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.561+47G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-7914G>A
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

10-75520655-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75520655
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75520655
    reference: chr 10
allele count: 27
allele frequency: 2.290348302597425e-4
allele num: 117886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+48A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.561+48A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.987+48A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.987+48A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.987+48A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-7913A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-7913A>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

10-75521825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75521825
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75521825
    reference: chr 10
allele count: 1
allele frequency: 8.148631029986962e-5
allele num: 12272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-6743C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+1218C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.987+1218C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.987+1218C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.987+1218C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-6743C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.562-31C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

10-75521859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75521859
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75521859
    reference: chr 10
allele count: 1
allele frequency: 8.112932013629726e-5
allele num: 12326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+1252C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-6709C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.565C>T
  hgvsp: ENSP00000402913.2:p.Leu189Phe
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-6709C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.987+1252C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.987+1252C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.987+1252C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu189Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

10-75521907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75521907
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75521907
    reference: chr 10
allele count: 1
allele frequency: 8.106355382619974e-5
allele num: 12336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+1300G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.987+1300G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-6661G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.987+1300G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.613G>A
  hgvsp: ENSP00000402913.2:p.Asp205Asn
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.987+1300G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-6661G>A
  variant of: http://identifiers.org/hgnc/10705
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp205Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

10-75521938-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75521938
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75521938
    reference: chr 10
allele count: 1
allele frequency: 8.107669855683477e-5
allele num: 12334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-6630G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.988-1310G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-6630G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.988-1310G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.630+14G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.988-1310G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+1331G>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

10-75521941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75521941
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75521941
    reference: chr 10
allele count: 1
allele frequency: 8.10898475510866e-5
allele num: 12332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-6627G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+1334G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.988-1307G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.630+17G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.988-1307G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.988-1307G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-6627G>A
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

10-75521966-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75521966
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75521966
    reference: chr 10
allele count: 3
allele frequency: 2.435064935064935e-4
allele num: 12320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-6602T>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.988-1282T>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.988-1282T>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.561+1359T>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.630+42T>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.988-1282T>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-6602T>A
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

10-75523202-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523202
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523202
    reference: chr 10
allele count: 2
allele frequency: 1.676839492923737e-5
allele num: 119272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5366C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.988-46C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.631-46C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-2007C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.988-46C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.988-46C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5366C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

10-75523213-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523213
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523213
    reference: chr 10
allele count: 7
allele frequency: 5.851375073142189e-5
allele num: 119630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.988-35T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.988-35T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.988-35T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1996T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5355T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.631-35T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5355T>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24274
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

10-75523217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523217
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523217
    reference: chr 10
allele count: 1
allele frequency: 8.349893956346754e-6
allele num: 119762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.631-31C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5351C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1992C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.988-31C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.988-31C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.988-31C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5351C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

10-75523224-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523224
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523224
    reference: chr 10
allele count: 5
allele frequency: 4.160495265356388e-5
allele num: 120178
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.988-24C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1985C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.631-24C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.988-24C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5344C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5344C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.988-24C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

10-75523225-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523225
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523225
    reference: chr 10
allele count: 1
allele frequency: 8.317253310266817e-6
allele num: 120232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.631-23T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5343T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1984T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.988-23T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5343T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.988-23T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.988-23T>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26757
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7274
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP

10-75523238-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523238
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523238
    reference: chr 10
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.988-10T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5330T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.631-10T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1971T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5330T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.988-10T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.988-10T>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

10-75523252-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523252
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523252
    reference: chr 10
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.992A>G
  hgvsp: ENSP00000321845.6:p.Gln331Arg
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.992A>G
  hgvsp: ENSP00000437000.1:p.Gln331Arg
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.992A>G
  hgvsp: ENSP00000343405.2:p.Gln331Arg
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5316A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.635A>G
  hgvsp: ENSP00000402913.2:p.Gln212Arg
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5316A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1957A>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln331Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

10-75523258-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523258
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523258
    reference: chr 10
allele count: 4
allele frequency: 3.305511941161887e-5
allele num: 121010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.641T>C
  hgvsp: ENSP00000402913.2:p.Ile214Thr
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.998T>C
  hgvsp: ENSP00000343405.2:p.Ile333Thr
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.998T>C
  hgvsp: ENSP00000437000.1:p.Ile333Thr
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5310T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1951T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5310T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.998T>C
  hgvsp: ENSP00000321845.6:p.Ile333Thr
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile333Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

10-75523262-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523262
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523262
    reference: chr 10
allele count: 1
allele frequency: 8.261185645363822e-6
allele num: 121048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1947A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5306A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1002A>G
  hgvsp: ENST00000345254.4:c.1002A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1002A>G
  hgvsp: ENST00000339365.2:c.1002A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.645A>G
  hgvsp: ENST00000411652.2:c.645A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5306A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1002A>G
  hgvsp: ENST00000465076.1:c.1002A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46612
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu334Glu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-75523267-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523267
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523267
    reference: chr 10
allele count: 1
allele frequency: 8.258865892535638e-6
allele num: 121082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.650A>T
  hgvsp: ENSP00000402913.2:p.Asp217Val
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5301A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1007A>T
  hgvsp: ENSP00000343405.2:p.Asp336Val
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1007A>T
  hgvsp: ENSP00000437000.1:p.Asp336Val
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5301A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1942A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1007A>T
  hgvsp: ENSP00000321845.6:p.Asp336Val
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 21494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7435
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp336Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

10-75523274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523274
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523274
    reference: chr 10
allele count: 5
allele frequency: 4.127523980914329e-5
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.657C>T
  hgvsp: ENST00000411652.2:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1014C>T
  hgvsp: ENST00000339365.2:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1935C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5294C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1014C>T
  hgvsp: ENST00000345254.4:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1014C>T
  hgvsp: ENST00000465076.1:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5294C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn338Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

10-75523275-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523275
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523275
    reference: chr 10
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1934A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5293A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1015A>T
  hgvsp: ENSP00000437000.1:p.Asn339Tyr
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1015A>T
  hgvsp: ENSP00000321845.6:p.Asn339Tyr
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.658A>T
  hgvsp: ENSP00000402913.2:p.Asn220Tyr
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5293A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1015A>T
  hgvsp: ENSP00000343405.2:p.Asn339Tyr
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn339Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

10-75523278-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523278
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523278
    reference: chr 10
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.661C>G
  hgvsp: ENSP00000402913.2:p.Arg221Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5290C>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1018C>G
  hgvsp: ENSP00000437000.1:p.Arg340Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1018C>G
  hgvsp: ENSP00000343405.2:p.Arg340Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1018C>G
  hgvsp: ENSP00000321845.6:p.Arg340Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5290C>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1931C>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg340Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

10-75523278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523278
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523278
    reference: chr 10
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1018C>T
  hgvsp: ENSP00000437000.1:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1018C>T
  hgvsp: ENSP00000343405.2:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1018C>T
  hgvsp: ENSP00000321845.6:p.Arg340Trp
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.661C>T
  hgvsp: ENSP00000402913.2:p.Arg221Trp
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1931C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5290C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5290C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46735
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg340Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-75523279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523279
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523279
    reference: chr 10
allele count: 2
allele frequency: 1.650682557237418e-5
allele num: 121162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1019G>A
  hgvsp: ENSP00000437000.1:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1019G>A
  hgvsp: ENSP00000343405.2:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1019G>A
  hgvsp: ENSP00000321845.6:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1930G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5289G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5289G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.662G>A
  hgvsp: ENSP00000402913.2:p.Arg221Gln
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg340Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-75523281-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523281
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523281
    reference: chr 10
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1928G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5287G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1021G>A
  hgvsp: ENSP00000321845.6:p.Gly341Ser
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1021G>A
  hgvsp: ENSP00000343405.2:p.Gly341Ser
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1021G>A
  hgvsp: ENSP00000437000.1:p.Gly341Ser
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.664G>A
  hgvsp: ENSP00000402913.2:p.Gly222Ser
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5287G>A
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly341Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

10-75523282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523282
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523282
    reference: chr 10
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5286G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1022G>A
  hgvsp: ENSP00000343405.2:p.Gly341Asp
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5286G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1927G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1022G>A
  hgvsp: ENSP00000321845.6:p.Gly341Asp
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1022G>A
  hgvsp: ENSP00000437000.1:p.Gly341Asp
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.665G>A
  hgvsp: ENSP00000402913.2:p.Gly222Asp
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7432
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly341Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

10-75523285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523285
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523285
    reference: chr 10
allele count: 4
allele frequency: 3.300711303285858e-5
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1924C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5283C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.668C>T
  hgvsp: ENSP00000402913.2:p.Thr223Ile
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1025C>T
  hgvsp: ENSP00000343405.2:p.Thr342Ile
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1025C>T
  hgvsp: ENSP00000437000.1:p.Thr342Ile
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5283C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1025C>T
  hgvsp: ENSP00000321845.6:p.Thr342Ile
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7431
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr342Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

10-75523288-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523288
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523288
    reference: chr 10
allele count: 3
allele frequency: 2.475247524752475e-5
allele num: 121200
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1028A>G
  hgvsp: ENSP00000343405.2:p.Glu343Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5280A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1921A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5280A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1028A>G
  hgvsp: ENSP00000321845.6:p.Glu343Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.671A>G
  hgvsp: ENSP00000402913.2:p.Glu224Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1028A>G
  hgvsp: ENSP00000437000.1:p.Glu343Gly
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu343Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/10-75523304-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523304
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523304
    reference: chr 10
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5264A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.687A>C
  hgvsp: ENST00000411652.2:c.687A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1044A>C
  hgvsp: ENST00000345254.4:c.1044A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1905A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1044A>C
  hgvsp: ENST00000465076.1:c.1044A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1044A>C
  hgvsp: ENST00000339365.2:c.1044A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5264A>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly348Gly
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

10-75523317-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523317
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523317
    reference: chr 10
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5251G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1057G>T
  hgvsp: ENSP00000343405.2:p.Val353Leu
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1057G>T
  hgvsp: ENSP00000321845.6:p.Val353Leu
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.700G>T
  hgvsp: ENSP00000402913.2:p.Val234Leu
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1057G>T
  hgvsp: ENSP00000437000.1:p.Val353Leu
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1892G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5251G>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val353Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/10-75523366-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523366
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523366
    reference: chr 10
allele count: 1
allele frequency: 8.334722453742291e-6
allele num: 119980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5202A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+7A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+7A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+7A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+7A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1843A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5202A>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1099+7A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

10-75523378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523378
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523378
    reference: chr 10
allele count: 2
allele frequency: 1.689160656069999e-5
allele num: 118402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+19C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5190C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+19C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1831C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+19C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5190C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+19C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20009
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22101
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4967
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

10-75523379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523379
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523379
    reference: chr 10
allele count: 2
allele frequency: 1.690531333998276e-5
allele num: 118306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5189C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+20C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+20C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1830C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+20C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5189C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+20C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21551
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
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genotype quality: GenotypeQuality
  all individuals: 6735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39007
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

10-75523386-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523386
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523386
    reference: chr 10
allele count: 1
allele frequency: 8.501810885718658e-6
allele num: 117622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5182A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5182A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+27A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+27A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+27A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+27A>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1823A>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

10-75523391-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523391
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523394
    reference: chr 10
allele count: 1
allele frequency: 8.587524045067326e-6
allele num: 116448
alternate allele: CTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5174_-75-5172dupTTT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+35_1099+37dupTTT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+35_1099+37dupTTT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1815_562-1813dupTTT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5174_-75-5172dupTTT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+35_742+37dupTTT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+35_1099+37dupTTT
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3029
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

10-75523392-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523392
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523392
    reference: chr 10
allele count: 1
allele frequency: 8.547154652216277e-6
allele num: 116998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5176T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+33T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1817T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5176T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+33T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+33T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+33T>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3799
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

10-75523394-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523394
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523391
    reference: chr 10
allele count: 2
allele frequency: 1.708934308565179e-5
allele num: 117032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+39_1099+41delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+39_1099+41delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5170_-75-5168delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1811_562-1809delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+39_1099+41delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+39_742+41delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5170_-75-5168delTTC
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14406
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5662
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28118
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: TTTC
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-75523401-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523401
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523401
    reference: chr 10
allele count: 1
allele frequency: 8.619055006809053e-6
allele num: 116022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5167A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1808A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5167A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+42A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+42A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+42A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+42A>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4598
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-75523407-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523407
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523407
    reference: chr 10
allele count: 1
allele frequency: 8.840951286358412e-6
allele num: 113110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5161A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+48A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1802A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+48A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5161A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+48A>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+48A>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

10-75523407-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523407
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523407
    reference: chr 10
allele count: 2
allele frequency: 1.768190257271682e-5
allele num: 113110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+48A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5161A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+48A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1802A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+48A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5161A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+48A>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2853
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

10-75523408-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523408
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523408
    reference: chr 10
allele count: 2
allele frequency: 1.762797912847271e-5
allele num: 113456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+49T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5160T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+49T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+49T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1801T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5160T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+49T>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16460
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5150
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

10-75523408-TCAGCTTATGGTTGGGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTTTAAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523408
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523349
    reference: chr 10
allele count: 1
allele frequency: 8.813989564236357e-6
allele num: 113456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9018
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5150
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: TCAGCTTATGGTTGGGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTTTAAC
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

10-75523410-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523410
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523410
    reference: chr 10
allele count: 1
allele frequency: 9.017295172140165e-6
allele num: 110898
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+51A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1799A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+51A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5158A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+51A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5158A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+51A>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16391
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5748
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS

10-75523411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523411
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523411
    reference: chr 10
allele count: 9
allele frequency: 8.438976820943665e-5
allele num: 106648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1099+52G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1798G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1099+52G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1099+52G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-5157G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.742+52G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-5157G>A
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16271
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

10-75523577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523577
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523577
    reference: chr 10
allele count: 1
allele frequency: 8.595939278284938e-6
allele num: 116334
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-37C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-37C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4991C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4991C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1632C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-37C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-37C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

10-75523590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523590
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523590
    reference: chr 10
allele count: 3
allele frequency: 2.564409416511377e-5
allele num: 116986
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-24C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-24C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4978C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1619C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-24C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4978C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-24C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12895
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

10-75523591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523591
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523591
    reference: chr 10
allele count: 1
allele frequency: 8.522388314101144e-6
allele num: 117338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4977G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1618G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-23G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-23G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4977G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-23G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-23G>A
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/10-75523598-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523598
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523598
    reference: chr 10
allele count: 1
allele frequency: 8.47314014573801e-6
allele num: 118020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-16C>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4970C>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-16C>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4970C>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1611C>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-16C>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-16C>A
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

10-75523600-GCCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523600
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523597
    reference: chr 10
allele count: 2
allele frequency: 1.689788607445209e-5
allele num: 118358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-10_1100-8delCCT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4964_-75-4962delCCT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4964_-75-4962delCCT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-10_1100-8delCCT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1605_562-1603delCCT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-10_743-8delCCT
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-10_1100-8delCCT
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7624
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: GCCT
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

10-75523601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523601
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523601
    reference: chr 10
allele count: 46
allele frequency: 3.882511816340311e-4
allele num: 118480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-13C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-13C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-13C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4967C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1608C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-13C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4967C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28028
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14379
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7620
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 9.75e1
  variant carriers: 46
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-75523603-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523603
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523603
    reference: chr 10
allele count: 2
allele frequency: 1.683133320990356e-5
allele num: 118826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1606T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-11T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-11T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-11T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4965T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-11T>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4965T>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

10-75523604-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523604
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523601
    reference: chr 10
allele count: 3
allele frequency: 2.52177129215561e-5
allele num: 118964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-5_743-3delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4959_-75-4957delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-5_1100-3delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-5_1100-3delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-5_1100-3delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4959_-75-4957delTTC
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1600_562-1598delTTC
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1100-5_1100-3delTTC
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: CCTT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

10-75523607-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523607
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523607
    reference: chr 10
allele count: 2
allele frequency: 1.676108745935436e-5
allele num: 119324
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-7T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4961T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1602T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-7T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-7T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4961T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-7T>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1100-7T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

10-75523611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523611
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523611
    reference: chr 10
allele count: 3
allele frequency: 2.505888838771112e-5
allele num: 119718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1598C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4957C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1100-3C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4957C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.743-3C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1100-3C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1100-3C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1100-3C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

10-75523623-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523623
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523623
    reference: chr 10
allele count: 1
allele frequency: 8.314072398942449e-6
allele num: 120278
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1109G>A
  hgvsp: ENSP00000343405.2:p.Ser370Asn
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1109G>A
  hgvsp: ENSP00000437000.1:p.Ser370Asn
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4945G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1586G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.752G>A
  hgvsp: ENSP00000402913.2:p.Ser251Asn
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4945G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1109G>A
  hgvsp: ENSP00000321845.6:p.Ser370Asn
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28570
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser370Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

10-75523628-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523628
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523628
    reference: chr 10
allele count: 1
allele frequency: 8.329307501374335e-6
allele num: 120058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4940C>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1114C>G
  hgvsp: ENSP00000343405.2:p.Arg372Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1114C>G
  hgvsp: ENSP00000437000.1:p.Arg372Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4940C>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1114C>G
  hgvsp: ENSP00000321845.6:p.Arg372Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.757C>G
  hgvsp: ENSP00000402913.2:p.Arg253Gly
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1581C>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7620
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg372Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

10-75523629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523629
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523629
    reference: chr 10
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.758G>A
  hgvsp: ENSP00000402913.2:p.Arg253Gln
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4939G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4939G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1115G>A
  hgvsp: ENSP00000321845.6:p.Arg372Gln
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1580G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1115G>A
  hgvsp: ENSP00000343405.2:p.Arg372Gln
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1115G>A
  hgvsp: ENSP00000437000.1:p.Arg372Gln
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg372Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

10-75523634-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523634
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523634
    reference: chr 10
allele count: 2126
allele frequency: 1.772139237129901e-2
allele num: 119968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4934A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1120A>G
  hgvsp: ENSP00000437000.1:p.Ile374Val
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1120A>G
  hgvsp: ENSP00000343405.2:p.Ile374Val
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1120A>G
  hgvsp: ENSP00000321845.6:p.Ile374Val
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1575A>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.763A>G
  hgvsp: ENSP00000402913.2:p.Ile255Val
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4934A>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14912
  bin: 2.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 11152
  bin: 3.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 28365
  bin: 2.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.75e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44517
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3087
  bin: 9.75e1
  variant carriers: 2085
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Ile374Val
num of homozygotes: 28
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-75523657-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523657
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523657
    reference: chr 10
allele count: 1
allele frequency: 8.651716500553709e-6
allele num: 115584
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1552C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.786C>T
  hgvsp: ENST00000411652.2:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1143C>T
  hgvsp: ENST00000465076.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1143C>T
  hgvsp: ENST00000345254.4:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4911C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4911C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1143C>T
  hgvsp: ENST00000339365.2:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26964
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile381Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS

10-75523658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523658
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523658
    reference: chr 10
allele count: 1
allele frequency: 8.710042679209128e-6
allele num: 114810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1551C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1144C>T
  hgvsp: ENSP00000437000.1:p.Pro382Ser
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1144C>T
  hgvsp: ENSP00000343405.2:p.Pro382Ser
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1144C>T
  hgvsp: ENSP00000321845.6:p.Pro382Ser
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.787C>T
  hgvsp: ENSP00000402913.2:p.Pro263Ser
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4910C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4910C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13608
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41555
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro382Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-75523662-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523662
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523662
    reference: chr 10
allele count: 1
allele frequency: 8.836576356856299e-6
allele num: 113166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4906G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1547G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1148G>T
  hgvsp: ENSP00000321845.6:p.Cys383Phe
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.791G>T
  hgvsp: ENSP00000402913.2:p.Cys264Phe
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1148G>T
  hgvsp: ENSP00000343405.2:p.Cys383Phe
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1148G>T
  hgvsp: ENSP00000437000.1:p.Cys383Phe
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4906G>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6581
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys383Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

10-75523663-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523663
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523663
    reference: chr 10
allele count: 1
allele frequency: 8.916311500258573e-6
allele num: 112154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.792C>T
  hgvsp: ENST00000411652.2:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1149C>T
  hgvsp: ENST00000339365.2:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1149C>T
  hgvsp: ENST00000345254.4:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1546C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4905C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1149C>T
  hgvsp: ENST00000465076.1:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4905C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys383Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-75523665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523665
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523665
    reference: chr 10
allele count: 2
allele frequency: 1.794108148839212e-5
allele num: 111476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1151C>T
  hgvsp: ENSP00000437000.1:p.Thr384Ile
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.794C>T
  hgvsp: ENSP00000402913.2:p.Thr265Ile
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1151C>T
  hgvsp: ENSP00000343405.2:p.Thr384Ile
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4903C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1544C>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1151C>T
  hgvsp: ENSP00000321845.6:p.Thr384Ile
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4903C>T
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr384Ile
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

10-75523672-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523672
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523672
    reference: chr 10
allele count: 2
allele frequency: 1.928491533922166e-5
allele num: 103708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4896C>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1158C>G
  hgvsp: ENSP00000343405.2:p.Asp386Glu
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1158C>G
  hgvsp: ENSP00000437000.1:p.Asp386Glu
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4896C>G
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.801C>G
  hgvsp: ENSP00000402913.2:p.Asp267Glu
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1158C>G
  hgvsp: ENSP00000321845.6:p.Asp386Glu
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1537C>G
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19523
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp386Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

10-75523674-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523674
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523674
    reference: chr 10
allele count: 378
allele frequency: 3.643022359290671e-3
allele num: 103760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1535T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4894T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4894T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1160T>C
  hgvsp: ENSP00000437000.1:p.Met387Thr
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1160T>C
  hgvsp: ENSP00000343405.2:p.Met387Thr
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.803T>C
  hgvsp: ENSP00000402913.2:p.Met268Thr
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1160T>C
  hgvsp: ENSP00000321845.6:p.Met387Thr
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8563
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 19572
  bin: 2.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 12289
  bin: 2.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met387Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

10-75523678-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523678
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523678
    reference: chr 10
allele count: 1
allele frequency: 1.004459801518743e-5
allele num: 99556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.807T>C
  hgvsp: ENST00000411652.2:c.807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1164T>C
  hgvsp: ENST00000339365.2:c.1164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1164T>C
  hgvsp: ENST00000465076.1:c.1164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1531T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1164T>C
  hgvsp: ENST00000345254.4:c.1164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4890T>C
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4890T>C
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala388Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

10-75523681-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523681
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523681
    reference: chr 10
allele count: 2
allele frequency: 2.081252081252081e-5
allele num: 96096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1528G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1167G>T
  hgvsp: ENSP00000437000.1:p.Lys389Asn
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1167G>T
  hgvsp: ENSP00000343405.2:p.Lys389Asn
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4887G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4887G>T
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.810G>T
  hgvsp: ENSP00000402913.2:p.Lys270Asn
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1167G>T
  hgvsp: ENSP00000321845.6:p.Lys389Asn
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys389Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

10-75523691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 75523691
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 75523691
    reference: chr 10
allele count: 3
allele frequency: 3.418024381907258e-5
allele num: 87770
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000343405
  ensembl transcript: ENST00000339365
  gene symbol: SEC24C
  hgvsc: ENST00000339365.2:c.1177G>A
  hgvsp: ENSP00000343405.2:p.Val393Met
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000321845
  ensembl transcript: ENST00000345254
  gene symbol: SEC24C
  hgvsc: ENST00000345254.4:c.1177G>A
  hgvsp: ENSP00000321845.6:p.Val393Met
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446174
  ensembl transcript: ENST00000535742
  gene symbol: SEC24C
  hgvsc: ENST00000535742.1:c.-75-4877G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000446333
  ensembl transcript: ENST00000546025
  gene symbol: SEC24C
  hgvsc: ENST00000546025.1:c.562-1518G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000402913
  ensembl transcript: ENST00000411652
  gene symbol: SEC24C
  hgvsc: ENST00000411652.2:c.820G>A
  hgvsp: ENSP00000402913.2:p.Val274Met
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000445023
  ensembl transcript: ENST00000540668
  gene symbol: SEC24C
  hgvsc: ENST00000540668.1:c.-75-4877G>A
  variant of: http://identifiers.org/hgnc/10705
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000176986
  ensembl protein: ENSP00000437000
  ensembl transcript: ENST00000465076
  gene symbol: SEC24C
  hgvsc: ENST00000465076.1:c.1177G>A
  hgvsp: ENSP00000437000.1:p.Val393Met
  variant of: http://identifiers.org/hgnc/10705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15042
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11176
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val393Met
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-5
allele num: 66100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.067e1

MQ
type: SiteQuality
SIO_000300: 5.861e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

FS
type: SiteQuality
SIO_000300: 6.372e0

DP
type: SiteQuality
SIO_000300: 3.053431e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.996e0

VQSLOD
type: SiteQuality
SIO_000300: -1.729e0

GenotypeQuality
all individuals: 1457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15088
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.060752169720347e-3
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

DP
type: SiteQuality
SIO_000300: 3.048098e6

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.389e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43471
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 902
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2179
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65944
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.460207612456747e-4
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14818
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.23e-1

QD
type: SiteQuality
SIO_000300: 1.003e1

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

DP
type: SiteQuality
SIO_000300: 3.040329e6

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.298e0

GenotypeQuality
all individuals: 1251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 3663
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.588865616367666e-5
allele num: 65886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.035219e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 2.103e0

QD
type: SiteQuality
SIO_000300: 1.413e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.49e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.11208110391439e-4
allele num: 14204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65716
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 4.914e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.668e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: -5.417e0

DP
type: SiteQuality
SIO_000300: 3.029041e6

QD
type: SiteQuality
SIO_000300: 4.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1905
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variant carriers: 0

GenotypeQuality
all individuals: 43466
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65688
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.030371203599551e-5
allele num: 14224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 3.027786e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.051e0

QD
type: SiteQuality
SIO_000300: 1.12e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeQuality
all individuals: 405
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43474
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 1330
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 27
allele frequency: 1.899802983394315e-3
allele num: 14212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65676
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

DP
type: SiteQuality
SIO_000300: 3.027748e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.445e0

QD
type: SiteQuality
SIO_000300: 1.487e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
all individuals: 470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 288
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GenotypeQuality
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GenotypeQuality
all individuals: 1036
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GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 2.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.97881e5

QD
type: SiteQuality
SIO_000300: 1.314e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.532e0

VQSLOD
type: SiteQuality
SIO_000300: -7.647e-1

GenotypeQuality
all individuals: 1861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 489
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GenotypeQuality
all individuals: 626
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.901960784313725e-3
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.372e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.68e-2

DP
type: SiteQuality
SIO_000300: 2.00604e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.517e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.514e0

QD
type: SiteQuality
SIO_000300: 1.483e1

VQSLOD
type: SiteQuality
SIO_000300: -1.039e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.242e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e0

DP
type: SiteQuality
SIO_000300: 2.01906e5

FS
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.345e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.84e-2

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.765486725663717e-4
allele num: 3616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.02355e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

MQ
type: SiteQuality
SIO_000300: 5.74e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.736111111111111e-3
allele num: 576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 2.0272e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.18e-2

QD
type: SiteQuality
SIO_000300: 1.445e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

FS
type: SiteQuality
SIO_000300: 1.215e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e-1

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
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GenotypeQuality
all individuals: 43
bin: 3.25e1
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GenotypeQuality
all individuals: 543
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 1550
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GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 476
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GenotypeQuality
all individuals: 632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 3.939075630252101e-4
allele num: 7616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3604
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.819e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

VQSLOD
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SIO_000300: -1.197e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.57e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.02835e5

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

FS
type: SiteQuality
SIO_000300: 1.3109e1

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65756
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.249218847644044e-5
allele num: 16002
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.443e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.663e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

DP
type: SiteQuality
SIO_000300: 1.510417e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 7
allele frequency: 4.347286051422183e-4
allele num: 16102
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.396e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.857e1

DP
type: SiteQuality
SIO_000300: 1.545318e6

FS
type: SiteQuality
SIO_000300: 6.318e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515289268721399e-5
allele num: 65994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.085e0

MQRankSum
type: SiteQuality
SIO_000300: -8.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.55904e6

GenotypeQuality
all individuals: 192
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1728
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.558350465594389e-5
allele num: 66152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 1.151e0

DP
type: SiteQuality
SIO_000300: 1.579011e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: -1.991e-1

QD
type: SiteQuality
SIO_000300: 1.511e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 145
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66176
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.746588693957115e-5
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.241e0

MQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.106e1

VQSLOD
type: SiteQuality
SIO_000300: -2.57e-1

MQ
type: SiteQuality
SIO_000300: 5.431e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.580499e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.706853038245001e-5
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16368
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DP
type: SiteQuality
SIO_000300: 1.595627e6

BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: -1.002e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.72e-1

MQ
type: SiteQuality
SIO_000300: 5.886e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.601709e6

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66492
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African
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allele frequency: 3.867723844517501e-4
allele num: 10342
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Latino
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
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East Asian
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MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

ClippingRankSum
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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QD
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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Latino
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East Asian
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VQSLOD
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MQ
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Other
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East Asian
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European (Finnish)
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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FS
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ReadPosRankSum
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QD
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MQ
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10364
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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Latino
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MQ
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QD
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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Other
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ClippingRankSum
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FS
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Latino
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Other
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East Asian
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European (Finnish)
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VQSLOD
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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European (Finnish)
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East Asian
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Other
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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European (Non-Finnish)
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South Asian
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.468208092485549e-4
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.164e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

DP
type: SiteQuality
SIO_000300: 1.605749e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.891e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -2.187e0

FS
type: SiteQuality
SIO_000300: 5.344e0

DP
type: SiteQuality
SIO_000300: 1.605886e6

QD
type: SiteQuality
SIO_000300: 1.108e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.636e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.997e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.845e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.972e0

DP
type: SiteQuality
SIO_000300: 1.605841e6

QD
type: SiteQuality
SIO_000300: 1.036e1

MQ
type: SiteQuality
SIO_000300: 5.796e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514050387596899e-5
allele num: 66048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.280999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

QD
type: SiteQuality
SIO_000300: 1.561e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.309e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

DP
type: SiteQuality
SIO_000300: 1.581048e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 151
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11184
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.97667523225934e-4
allele num: 10118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65202
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 1.522842e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 1.211e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.685e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 204
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GenotypeQuality
all individuals: 380
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.885330170027679e-5
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53477807109092e-5
allele num: 65156
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.513781e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQ
type: SiteQuality
SIO_000300: 5.837e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 2.443e0

VQSLOD
type: SiteQuality
SIO_000300: -1.861e0

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.230920728705071e-4
allele num: 8124
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11000
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.551301541993733e-5
allele num: 64462
num of homozygotes: 0

African
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allele count: 0
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allele num: 10008
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.544e1

FS
type: SiteQuality
SIO_000300: 2.572e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.243471773190749e-4
allele num: 8042
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64552
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Other
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele num: 10008
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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MQ
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FS
type: SiteQuality
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.098661378284581e-5
allele num: 64544
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East Asian
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Other
type: Population
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BaseQRankSum
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SIO_000300: 5.32e-1

DP
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InbreedingCoeff
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 540
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.211495946941784e-5
allele num: 10856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 6.65e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-2

DP
type: SiteQuality
SIO_000300: 1.327804e6

MQRankSum
type: SiteQuality
SIO_000300: -9.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.597e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.39e-1

GenotypeQuality
all individuals: 7702
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62814
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.38895987733197e-5
allele num: 15652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.027e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

MQRankSum
type: SiteQuality
SIO_000300: -1.042e0

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.289597e6

GenotypeQuality
all individuals: 830
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2949
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7702
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.184003566083994e-5
allele num: 62814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.042e0

DP
type: SiteQuality
SIO_000300: 1.289597e6

QD
type: SiteQuality
SIO_000300: 1.027e1

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.001e0

GenotypeQuality
all individuals: 905
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9018
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4015
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.190810465858328e-5
allele num: 62680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.364e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

QD
type: SiteQuality
SIO_000300: 2.03e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 1.284604e6

GenotypeQuality
all individuals: 4015
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595405232929164e-5
allele num: 62680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 2.03e0

MQRankSum
type: SiteQuality
SIO_000300: -1.364e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 1.284604e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.94e-1

GenotypeQuality
all individuals: 1235
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3926
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8441
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5847
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9070
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.746588693957115e-5
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15296
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

QD
type: SiteQuality
SIO_000300: 7.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

DP
type: SiteQuality
SIO_000300: 1.279494e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.646e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1297
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8949
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1727
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4490
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.460207612456747e-4
allele num: 5780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.183912322835977e-4
allele num: 59126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.2791e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.258e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7528
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.612667478684531e-5
allele num: 13136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.625585e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.419e-1

FS
type: SiteQuality
SIO_000300: 7.707e0

QD
type: SiteQuality
SIO_000300: 1.016e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.519e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.583651642475172e-5
allele num: 65450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.64139e6

MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

FS
type: SiteQuality
SIO_000300: 4.064e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.101e0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7598
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 7.25e1
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GenotypeQuality
all individuals: 743
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.55e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

DP
type: SiteQuality
SIO_000300: 1.645356e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.822e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.971556051310653e-5
allele num: 14344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65714
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.098e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 1.655364e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.039698461912578e-5
allele num: 65796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 1.925e0

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.659924e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.829e1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.06357116810502e-4
allele num: 65816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 39
allele frequency: 5.907300817933959e-3
allele num: 6602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

DP
type: SiteQuality
SIO_000300: 1.662422e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.11e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.512e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1557
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variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0351777096549e-5
allele num: 65894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

FS
type: SiteQuality
SIO_000300: 1.825e0

DP
type: SiteQuality
SIO_000300: 1.665153e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.330140994945464e-4
allele num: 15036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.666776e6

MQ
type: SiteQuality
SIO_000300: 5.816e1

FS
type: SiteQuality
SIO_000300: 1.243e0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
SIO_000300: 1.596e1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1163
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029017992366875e-5
allele num: 66028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

FS
type: SiteQuality
SIO_000300: 5.629999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.82e-1

DP
type: SiteQuality
SIO_000300: 1.670757e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 325
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.471418653089562e-4
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66126
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

DP
type: SiteQuality
SIO_000300: 1.676064e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.229e0

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 3.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 717
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.306e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 9.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.447e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

DP
type: SiteQuality
SIO_000300: 1.681272e6

QD
type: SiteQuality
SIO_000300: 8.15e0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1446
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512035805007863e-5
allele num: 66136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.303e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

DP
type: SiteQuality
SIO_000300: 1.677542e6

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1010
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GenotypeQuality
all individuals: 7623
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GenotypeQuality
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GenotypeQuality
all individuals: 1440
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GenotypeQuality
all individuals: 119
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GenotypeQuality
all individuals: 708
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GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511532996765319e-5
allele num: 66158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.688e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQ
type: SiteQuality
SIO_000300: 5.699e1

VQSLOD
type: SiteQuality
SIO_000300: -9.556e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.115e0

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 1.677631e6

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7449
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 137
allele frequency: 1.196715583508036e-2
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1745
allele frequency: 2.640498744060769e-2
allele num: 66086
num of homozygotes: 26

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 154
allele frequency: 9.559279950341403e-3
allele num: 16110
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 22
allele frequency: 3.354681305275999e-3
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 19
allele frequency: 2.120535714285714e-2
allele num: 896
num of homozygotes: 1

African
type: Population
allele count: 49
allele frequency: 4.784221831673501e-3
allele num: 10242
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.245e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

DP
type: SiteQuality
SIO_000300: 1.693213e6

FS
type: SiteQuality
SIO_000300: 5.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42507
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4892
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577486118122161e-5
allele num: 63392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

QD
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 1.5637e6

VQSLOD
type: SiteQuality
SIO_000300: -2.695e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 1.944e0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.444960041247745e-5
allele num: 15516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

QD
type: SiteQuality
SIO_000300: 1.387e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e-1

DP
type: SiteQuality
SIO_000300: 1.550149e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeQuality
all individuals: 403
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6930
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619118551860367e-5
allele num: 61762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

QD
type: SiteQuality
SIO_000300: 1.476e1

DP
type: SiteQuality
SIO_000300: 1.518612e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.261e0

FS
type: SiteQuality
SIO_000300: 1.663e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
SIO_000300: 6.41e-1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.636179194345365e-5
allele num: 61118
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.886e1

QD
type: SiteQuality
SIO_000300: 1.476e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 1.663e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.499406e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.234e0

VQSLOD
type: SiteQuality
SIO_000300: -1.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 332
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.392916965781287e-4
allele num: 8358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.8e0

VQSLOD
type: SiteQuality
SIO_000300: -1.488e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.628e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

FS
type: SiteQuality
SIO_000300: 6.934e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

DP
type: SiteQuality
SIO_000300: 1.48549e6

GenotypeQuality
all individuals: 1373
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14728
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4934
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30705
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.191540653079115e-4
allele num: 9126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56064
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.858e-1

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

FS
type: SiteQuality
SIO_000300: 8.093999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.354e0

DP
type: SiteQuality
SIO_000300: 1.335788e6

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 351
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 14883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1297
bin: 9.75e1
variant carriers: 375

GenotypeQuality
all individuals: 818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31776
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 6.564551422319475e-4
allele num: 9140
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.089058524173028e-3
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.107531212243254e-3
allele num: 9932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.876876876876877e-3
allele num: 5328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7838
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.777504777504777e-4
allele num: 14652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 340
allele frequency: 6.062335068825334e-3
allele num: 56084
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

DP
type: SiteQuality
SIO_000300: 1.33397e6

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18092
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.870347510567463e-5
allele num: 53466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 5.68e0

DP
type: SiteQuality
SIO_000300: 1.246416e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.031e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.709e1

VQSLOD
type: SiteQuality
SIO_000300: -1.276e0

GenotypeQuality
all individuals: 168
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 25234
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51438
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.415628539071348e-4
allele num: 14128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

QD
type: SiteQuality
SIO_000300: 1.001e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.705e0

VQSLOD
type: SiteQuality
SIO_000300: 7.85e-1

FS
type: SiteQuality
SIO_000300: 5.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 1.177661e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.49e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3