4-166200662-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200662
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200660
    reference: chr 4
allele count: 1
allele frequency: 8.398703240219711e-6
allele num: 119066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14848_545-14847delTT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14848_47-14847delTT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14848_*282-14847delTT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.134_135delAA
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14848_104-14847delTT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.512_513delAA
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14848_125-14847delTT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14848_254-14847delTT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14848_281-14847delTT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14848_557-14847delTT
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: CTT
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

4-166200690-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200690
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200690
    reference: chr 4
allele count: 2
allele frequency: 1.682057492725101e-5
allele num: 118902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14821A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14821A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.486T>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14821A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14821A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14821A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.108T>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14821A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14821A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14821A>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

4-166200703-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200703
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200703
    reference: chr 4
allele count: 1
allele frequency: 8.364001338240215e-6
allele num: 119560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.95C>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14808G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14808G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14808G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14808G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14808G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14808G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14808G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.473C>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14808G>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

4-166200706-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200706
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200706
    reference: chr 4
allele count: 1
allele frequency: 8.349615082744685e-6
allele num: 119766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14805C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14805C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14805C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14805C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.470G>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.92G>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14805C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14805C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14805C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14805C>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7648
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

4-166200712-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200712
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200712
    reference: chr 4
allele count: 1
allele frequency: 8.322652595835345e-6
allele num: 120154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14799T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.86A>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14799T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14799T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14799T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14799T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14799T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.464A>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14799T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14799T>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7680
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/4-166200719-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200719
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200719
    reference: chr 4
allele count: 1
allele frequency: 8.298617450332775e-6
allele num: 120502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14792C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14792C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.79G>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.457G>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14792C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14792C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14792C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14792C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14792C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14792C>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7690
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum

4-166200719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200719
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200719
    reference: chr 4
allele count: 2
allele frequency: 1.659723490066555e-5
allele num: 120502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14792C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14792C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14792C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14792C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14792C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.457G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.79G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14792C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14792C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14792C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

4-166200727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200727
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200727
    reference: chr 4
allele count: 8
allele frequency: 6.626575882577075e-5
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14784C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14784C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14784C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14784C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14784C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14784C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.71G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14784C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14784C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.449G>A
  variant of: http://identifiers.org/hgnc/4292
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

4-166200728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200728
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200728
    reference: chr 4
allele count: 7
allele frequency: 5.794126411283647e-5
allele num: 120812
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.70C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14783G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14783G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14783G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14783G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14783G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14783G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14783G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.448C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14783G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/4-166200729-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200729
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200729
    reference: chr 4
allele count: 1
allele frequency: 8.276501357346223e-6
allele num: 120824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14782C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14782C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14782C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.69G>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14782C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14782C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14782C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14782C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.447G>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14782C>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-166200729-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200729
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200729
    reference: chr 4
allele count: 18
allele frequency: 1.48977024432232e-4
allele num: 120824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14782C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14782C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14782C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14782C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14782C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14782C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14782C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14782C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.69G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.447G>A
  variant of: http://identifiers.org/hgnc/4292
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 35036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

4-166200730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200730
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200730
    reference: chr 4
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.446C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14781G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14781G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14781G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14781G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14781G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14781G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14781G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.68C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14781G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

4-166200733-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200733
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200733
    reference: chr 4
allele count: 2
allele frequency: 1.652619401751776e-5
allele num: 121020
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.443C>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14778G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14778G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14778G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14778G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.65C>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14778G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14778G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14778G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14778G>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

4-166200737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200737
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200737
    reference: chr 4
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.439A>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14774T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.61A>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14774T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14774T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14774T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14774T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14774T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14774T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14774T>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7825
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

4-166200742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200742
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200742
    reference: chr 4
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14769C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14769C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14769C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14769C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14769C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.56G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14769C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14769C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.434G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14769C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

4-166200747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200747
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200747
    reference: chr 4
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14764G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.51C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14764G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14764G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.429C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14764G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14764G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14764G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14764G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14764G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

4-166200749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200749
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200749
    reference: chr 4
allele count: 6
allele frequency: 4.953683063357606e-5
allele num: 121122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14762C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14762C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14762C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14762C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.427G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.49G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14762C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14762C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14762C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14762C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

4-166200753-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200753
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200753
    reference: chr 4
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14758T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14758T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14758T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14758T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.45A>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14758T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14758T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.423A>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14758T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14758T>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

4-166200754-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200754
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200755
    reference: chr 4
allele count: 1
allele frequency: 8.256547442121603e-6
allele num: 121116
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14752dupC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14752dupC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.421dupG
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14752dupC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14752dupC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14752dupC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14752dupC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14752dupC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.43dupG
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14752dupC
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

4-166200757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200757
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200757
    reference: chr 4
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14754C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14754C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14754C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14754C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14754C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14754C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.419G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.41G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14754C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14754C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

4-166200761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200761
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200761
    reference: chr 4
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14750C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14750C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14750C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.37G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14750C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14750C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14750C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.415G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14750C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14750C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

4-166200762-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200762
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200762
    reference: chr 4
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14749C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.414G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.36G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14749C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14749C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14749C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14749C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14749C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14749C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14749C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

4-166200764-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200764
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200764
    reference: chr 4
allele count: 1
allele frequency: 8.256547442121603e-6
allele num: 121116
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14747A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14747A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14747A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14747A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14747A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14747A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14747A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14747A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.34T>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.412T>C
  variant of: http://identifiers.org/hgnc/4292
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

4-166200766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200766
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200766
    reference: chr 4
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14745G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14745G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14745G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.410C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14745G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.32C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14745G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14745G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14745G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14745G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

4-166200776-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200776
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200775
    reference: chr 4
allele count: 3
allele frequency: 2.477250582153887e-5
allele num: 121102
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.399delA
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14734delT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14734delT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14734delT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14734delT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14734delT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14734delT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.21delA
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14734delT
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14734delT
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: CT
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

4-166200783-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200783
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200783
    reference: chr 4
allele count: 6
allele frequency: 4.956793285197363e-5
allele num: 121046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14728C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14728C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14728C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.15G>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14728C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.393G>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14728C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14728C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14728C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14728C>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7695
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

4-166200796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200796
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200796
    reference: chr 4
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14715A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000505354
  gene symbol: GK3P
  hgvsc: ENST00000505354.1:n.2T>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.380T>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14715A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14715A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14715A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14715A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14715A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14715A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14715A>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

4-166200802-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200802
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200802
    reference: chr 4
allele count: 2
allele frequency: 1.654259718775848e-5
allele num: 120900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14709C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14709C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14709C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14709C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.374G>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14709C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14709C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14709C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14709C>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

4-166200814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200814
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200814
    reference: chr 4
allele count: 1
allele frequency: 8.299443937256203e-6
allele num: 120490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14697C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14697C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14697C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14697C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14697C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.362G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14697C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14697C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14697C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

4-166200815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200815
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200815
    reference: chr 4
allele count: 5
allele frequency: 4.150617611900651e-5
allele num: 120464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14696C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14696C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14696C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14696C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14696C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14696C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14696C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.361G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14696C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19252
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7821
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

4-166200816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200816
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200816
    reference: chr 4
allele count: 3
allele frequency: 2.497045163223519e-5
allele num: 120142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14695G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.360C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14695G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14695G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14695G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14695G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14695G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14695G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14695G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

4-166200819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200819
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200819
    reference: chr 4
allele count: 2
allele frequency: 1.663284654535777e-5
allele num: 120244
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.357G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14692C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14692C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14692C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14692C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14692C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14692C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14692C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14692C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7388
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

4-166200820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200820
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200820
    reference: chr 4
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14691G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14691G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14691G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14691G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14691G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14691G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.356C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14691G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14691G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31553
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

4-166200828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200828
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200828
    reference: chr 4
allele count: 21
allele frequency: 1.750963029666316e-4
allele num: 119934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14683G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.348C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14683G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14683G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14683G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14683G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14683G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14683G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14683G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18262
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

4-166200829-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200829
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200829
    reference: chr 4
allele count: 1
allele frequency: 8.339727124128499e-6
allele num: 119908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14682G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.347C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14682G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14682G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14682G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14682G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14682G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14682G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14682G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

4-166200830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200830
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200830
    reference: chr 4
allele count: 1
allele frequency: 8.34306691139663e-6
allele num: 119860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14681C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14681C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14681C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14681C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14681C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14681C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14681C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.346G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14681C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-166200831-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200831
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200831
    reference: chr 4
allele count: 1
allele frequency: 8.343763037129745e-6
allele num: 119850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14680C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14680C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14680C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14680C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.345G>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14680C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14680C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14680C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14680C>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

4-166200831-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200831
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200831
    reference: chr 4
allele count: 3
allele frequency: 2.503128911138924e-5
allele num: 119850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14680C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14680C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.345G>C
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14680C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14680C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14680C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14680C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14680C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14680C>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15719
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-166200832-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200832
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200832
    reference: chr 4
allele count: 7
allele frequency: 5.84932147870847e-5
allele num: 119672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14679G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14679G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14679G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14679G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.344C>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14679G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14679G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14679G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14679G>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17593
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15361
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

4-166200840-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200840
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200840
    reference: chr 4
allele count: 1
allele frequency: 8.423748231012871e-6
allele num: 118712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14671G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14671G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14671G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14671G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14671G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14671G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.336C>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14671G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14671G>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

4-166200841-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200841
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200841
    reference: chr 4
allele count: 4
allele frequency: 3.367513596336145e-5
allele num: 118782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14670G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14670G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14670G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14670G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.335C>G
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14670G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14670G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14670G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14670G>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

4-166200843-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200843
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200842
    reference: chr 4
allele count: 2
allele frequency: 1.686938038765836e-5
allele num: 118558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14667delG
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14667delG
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14667delG
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.332delC
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14667delG
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14667delG
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14667delG
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14667delG
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14667delG
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15852
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: TG
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

4-166200846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200846
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200846
    reference: chr 4
allele count: 7
allele frequency: 5.919661733615222e-5
allele num: 118250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14665C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14665C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14665C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14665C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14665C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14665C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.330G>A
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14665C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14665C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

4-166200847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166200847
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166200847
    reference: chr 4
allele count: 1
allele frequency: 8.474863554696769e-6
allele num: 117996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-14664G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-14664G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-14664G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000229894
  ensembl transcript: ENST00000413616
  gene symbol: GK3P
  hgvsc: ENST00000413616.1:n.329C>T
  variant of: http://identifiers.org/hgnc/4292
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-14664G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-14664G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-14664G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-14664G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-14664G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14513
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-166215460-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215460
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215460
    reference: chr 4
allele count: 1
allele frequency: 1.007110197997865e-5
allele num: 99294
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-51A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-51A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-51A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-51A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-51A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-51A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-51A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-51A>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4023
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

4-166215462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215462
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215462
    reference: chr 4
allele count: 1
allele frequency: 1.009265053188268e-5
allele num: 99082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-49G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-49G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-49G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-49G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-49G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-49G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-49G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-49G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3681
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10612
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

4-166215477-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215477
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215477
    reference: chr 4
allele count: 42
allele frequency: 4.188189306156638e-4
allele num: 100282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-34A>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-34A>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-34A>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-34A>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-34A>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-34A>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-34A>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-34A>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15904
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16009
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5824
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 9205
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

4-166215478-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215478
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215478
    reference: chr 4
allele count: 97
allele frequency: 9.631232996405663e-4
allele num: 100714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-33T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-33T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-33T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-33T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-33T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-33T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-33T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-33T>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9566
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15493
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16875
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4041
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 2
num of homozygotes: 1
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

4-166215482-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215482
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215482
    reference: chr 4
allele count: 28
allele frequency: 2.764285432215772e-4
allele num: 101292
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-29A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-29A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-29A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-29A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-29A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-29A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-29A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-29A>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19919
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13754
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3819
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6089
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

4-166215484-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215484
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215484
    reference: chr 4
allele count: 2
allele frequency: 1.96564060227228e-5
allele num: 101748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-27T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-27T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-27T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-27T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-27T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-27T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-27T>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-27T>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4082
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5713
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/4-166215487-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215487
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215487
    reference: chr 4
allele count: 1
allele frequency: 9.728383531792358e-6
allele num: 102792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-24A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-24A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-24A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-24A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-24A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-24A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-24A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-24A>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5020
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3380
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

4-166215504-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215504
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215504
    reference: chr 4
allele count: 8
allele frequency: 7.215918315804666e-5
allele num: 110866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282-7C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281-7C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47-7C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104-7C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545-7C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254-7C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125-7C>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557-7C>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33559
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
hgvs: c.557-7C>G
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-166215511-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215511
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215511
    reference: chr 4
allele count: 1
allele frequency: 8.733014287211374e-6
allele num: 114508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.254A>G
  hgvsp: ENSP00000408974.2:p.Glu85Gly
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*282A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.125A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.104A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.557A>G
  hgvsp: ENSP00000424198.1:p.Glu186Gly
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.545A>G
  hgvsp: ENSP00000226725.6:p.Glu182Gly
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.281A>G
  hgvsp: ENSP00000437526.1:p.Glu94Gly
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.47A>G
  hgvsp: ENSP00000424108.1:p.Glu16Gly
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44167
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu186Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

4-166215531-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215531
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215531
    reference: chr 4
allele count: 1
allele frequency: 8.432556413802408e-6
allele num: 118588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*302G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.301G>C
  hgvsp: ENSP00000437526.1:p.Val101Leu
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.124G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.577G>C
  hgvsp: ENSP00000424198.1:p.Val193Leu
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.274G>C
  hgvsp: ENSP00000408974.2:p.Val92Leu
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.67G>C
  hgvsp: ENSP00000424108.1:p.Val23Leu
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.145G>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.565G>C
  hgvsp: ENSP00000226725.6:p.Val189Leu
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val193Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-166215537-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215537
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215537
    reference: chr 4
allele count: 1
allele frequency: 8.380122349786308e-6
allele num: 119330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.280A>C
  hgvsp: ENSP00000408974.2:p.Ser94Arg
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.151A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.583A>C
  hgvsp: ENSP00000424198.1:p.Ser195Arg
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.130A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*308A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.73A>C
  hgvsp: ENSP00000424108.1:p.Ser25Arg
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.571A>C
  hgvsp: ENSP00000226725.6:p.Ser191Arg
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.307A>C
  hgvsp: ENSP00000437526.1:p.Ser103Arg
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser195Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

4-166215553-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215553
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215553
    reference: chr 4
allele count: 2
allele frequency: 1.662759182587586e-5
allele num: 120282
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.599A>G
  hgvsp: ENSP00000424198.1:p.Asn200Ser
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.587A>G
  hgvsp: ENSP00000226725.6:p.Asn196Ser
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.89A>G
  hgvsp: ENSP00000424108.1:p.Asn30Ser
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.296A>G
  hgvsp: ENSP00000408974.2:p.Asn99Ser
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*324A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.167A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.323A>G
  hgvsp: ENSP00000437526.1:p.Asn108Ser
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.146A>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Asn200Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-166215563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215563
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215563
    reference: chr 4
allele count: 2
allele frequency: 1.661074382910867e-5
allele num: 120404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.333C>T
  hgvsp: ENST00000538127.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.609C>T
  hgvsp: ENST00000514860.1:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*334C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.156C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.306C>T
  hgvsp: ENST00000421009.2:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.177C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.99C>T
  hgvsp: ENST00000506761.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.597C>T
  hgvsp: ENST00000226725.6:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile203Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

4-166215564-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215564
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215564
    reference: chr 4
allele count: 3
allele frequency: 2.491818529162583e-5
allele num: 120394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.307G>A
  hgvsp: ENSP00000408974.2:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.157G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.334G>A
  hgvsp: ENSP00000437526.1:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.598G>A
  hgvsp: ENSP00000226725.6:p.Glu200Lys
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.610G>A
  hgvsp: ENSP00000424198.1:p.Glu204Lys
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.100G>A
  hgvsp: ENSP00000424108.1:p.Glu34Lys
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.178G>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*335G>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu204Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

4-166215566-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215566
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215566
    reference: chr 4
allele count: 1
allele frequency: 8.307303781484682e-6
allele num: 120376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.336A>G
  hgvsp: ENST00000538127.1:c.336A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.180A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.102A>G
  hgvsp: ENST00000506761.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*337A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.309A>G
  hgvsp: ENST00000421009.2:c.309A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.612A>G
  hgvsp: ENST00000514860.1:c.612A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.159A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.600A>G
  hgvsp: ENST00000226725.6:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu204Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

4-166215574-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215574
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215574
    reference: chr 4
allele count: 1
allele frequency: 8.31255195344971e-6
allele num: 120300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.167G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.188G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.317G>T
  hgvsp: ENSP00000408974.2:p.Cys106Phe
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*345G>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.110G>T
  hgvsp: ENSP00000424108.1:p.Cys37Phe
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.608G>T
  hgvsp: ENSP00000226725.6:p.Cys203Phe
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.620G>T
  hgvsp: ENSP00000424198.1:p.Cys207Phe
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.344G>T
  hgvsp: ENSP00000437526.1:p.Cys115Phe
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys207Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

4-166215600-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215600
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215600
    reference: chr 4
allele count: 1
allele frequency: 8.375069094320028e-6
allele num: 119402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.136A>G
  hgvsp: ENSP00000424108.1:p.Thr46Ala
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.343A>G
  hgvsp: ENSP00000408974.2:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.646A>G
  hgvsp: ENSP00000424198.1:p.Thr216Ala
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.193A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.214A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.370A>G
  hgvsp: ENSP00000437526.1:p.Thr124Ala
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*371A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.634A>G
  hgvsp: ENSP00000226725.6:p.Thr212Ala
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr216Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

4-166215603-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215603
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215603
    reference: chr 4
allele count: 3
allele frequency: 2.519653295706511e-5
allele num: 119064
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.139A>G
  hgvsp: ENSP00000424108.1:p.Ile47Val
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*374A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.373A>G
  hgvsp: ENSP00000437526.1:p.Ile125Val
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.217A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.346A>G
  hgvsp: ENSP00000408974.2:p.Ile116Val
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.649A>G
  hgvsp: ENSP00000424198.1:p.Ile217Val
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.196A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.637A>G
  hgvsp: ENSP00000226725.6:p.Ile213Val
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36748
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile217Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

4-166215608-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215608
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215608
    reference: chr 4
allele count: 1
allele frequency: 8.437679300685139e-6
allele num: 118516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.378T>C
  hgvsp: ENST00000538127.1:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.351T>C
  hgvsp: ENST00000421009.2:c.351T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.144T>C
  hgvsp: ENST00000506761.1:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.201T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.654T>C
  hgvsp: ENST00000514860.1:c.654T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*379T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.222T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.642T>C
  hgvsp: ENST00000226725.6:c.642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser218Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/4-166215627-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215627
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215627
    reference: chr 4
allele count: 13
allele frequency: 1.122024477395522e-4
allele num: 115862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.234+7A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.666+7A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.213+7A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.156+7A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.390+7A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.654+7A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*391+7A>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.363+7A>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24533
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: c.666+7A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

4-166215634-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215634
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215634
    reference: chr 4
allele count: 1
allele frequency: 8.687191604698033e-6
allele num: 115112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.654+14T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.213+14T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.156+14T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.390+14T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.363+14T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.234+14T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.666+14T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*391+14T>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

4-166215636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215636
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215636
    reference: chr 4
allele count: 1
allele frequency: 8.72783130847647e-6
allele num: 114576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.234+16T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.654+16T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*391+16T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.363+16T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.390+16T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.213+16T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.156+16T>C
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.666+16T>C
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

4-166215639-TCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215639
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215637
    reference: chr 4
allele count: 1
allele frequency: 8.788581874428743e-6
allele num: 113784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.654+21_654+22delCC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.213+21_213+22delCC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.363+21_363+22delCC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.156+21_156+22delCC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.390+21_390+22delCC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.234+21_234+22delCC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*391+21_*391+22delCC
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.666+21_666+22delCC
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TCC
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/4-166215642-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215642
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215642
    reference: chr 4
allele count: 1
allele frequency: 8.880048307462793e-6
allele num: 112612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.213+22C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.666+22C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.234+22C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.156+22C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.654+22C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.363+22C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*391+22C>A
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.390+22C>A
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10930
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

4-166215654-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215654
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215654
    reference: chr 4
allele count: 2
allele frequency: 2.137026114459119e-5
allele num: 93588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.213+34A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.666+34A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.654+34A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.156+34A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*391+34A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.363+34A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.234+34A>G
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.390+34A>G
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

4-166215661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 166215661
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 166215661
    reference: chr 4
allele count: 519
allele frequency: 6.789106035632996e-3
allele num: 76446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000509028
  gene symbol: KLHL2
  hgvsc: ENST00000509028.1:n.213+41C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000408974
  ensembl transcript: ENST00000421009
  gene symbol: KLHL2
  hgvsc: ENST00000421009.2:c.363+41C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000437526
  ensembl transcript: ENST00000538127
  gene symbol: KLHL2
  hgvsc: ENST00000538127.1:c.390+41C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000421844
  ensembl transcript: ENST00000506824
  gene symbol: KLHL2
  hgvsc: ENST00000506824.1:c.*391+41C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl transcript: ENST00000506541
  gene symbol: KLHL2
  hgvsc: ENST00000506541.1:n.234+41C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000226725
  ensembl transcript: ENST00000226725
  gene symbol: KLHL2
  hgvsc: ENST00000226725.6:c.654+41C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424108
  ensembl transcript: ENST00000506761
  gene symbol: KLHL2
  hgvsc: ENST00000506761.1:c.156+41C>T
  variant of: http://identifiers.org/hgnc/6353
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109466
  ensembl protein: ENSP00000424198
  ensembl transcript: ENST00000514860
  gene symbol: KLHL2
  hgvsc: ENST00000514860.1:c.666+41C>T
  variant of: http://identifiers.org/hgnc/6353
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 17685
  bin: 1.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12742
  bin: 1.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 7.5e0
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 4
num of homozygotes: 15
reference allele: C

GenotypeQuality
all individuals: 825
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7826
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 320
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32079
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526298116548124e-5
allele num: 65518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.049e1

QD
type: SiteQuality
SIO_000300: 8.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.637e-1

DP
type: SiteQuality
SIO_000300: 1.873473e6

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -2.996e0

FS
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SIO_000300: 2.808e0

MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 9328
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European (Non-Finnish)
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allele frequency: 3.057262527133205e-5
allele num: 65418
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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ClippingRankSum
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SIO_000300: -7.61e-1

BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.51952590791673e-5
allele num: 65810
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65926
num of homozygotes: 0

QD
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FS
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 4.244e1

DP
type: SiteQuality
SIO_000300: 1.894331e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66172
num of homozygotes: 0

South Asian
type: Population
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allele num: 16512
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Other
type: Population
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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MQRankSum
type: SiteQuality
SIO_000300: -1.424e0

FS
type: SiteQuality
SIO_000300: 5.921e0

DP
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.007658202337767e-4
allele num: 9924
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Other
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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DP
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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MQRankSum
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MQ
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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MQ
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 6.019744762822056e-5
allele num: 66448
num of homozygotes: 0

East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
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African
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Other
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQRankSum
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QD
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FS
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MQ
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SIO_000300: 4.929e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.347e0

DP
type: SiteQuality
SIO_000300: 1.906374e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.467e0

DP
type: SiteQuality
SIO_000300: 1.907235e6

FS
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

MQ
type: SiteQuality
SIO_000300: 4.817e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.64e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

Latino
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allele count: 10
allele frequency: 8.638562543192813e-4
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 7
allele frequency: 8.090614886731392e-4
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 1.907235e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.64e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.817e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.23e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.302e0

DP
type: SiteQuality
SIO_000300: 1.907404e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 3.938e0

VQSLOD
type: SiteQuality
SIO_000300: -2.004e0

MQ
type: SiteQuality
SIO_000300: 5.051e1

QD
type: SiteQuality
SIO_000300: 1.264e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.777082518576456e-5
allele num: 10228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.757e0

MQ
type: SiteQuality
SIO_000300: 5.135e1

DP
type: SiteQuality
SIO_000300: 1.908617e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1787e1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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MQ
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SIO_000300: 5.068e1

DP
type: SiteQuality
SIO_000300: 1.909559e6

ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

Other
type: Population
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
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QD
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.014423076923077e-5
allele num: 66560
num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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QD
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DP
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MQRankSum
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SIO_000300: 3.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 2.448e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.181e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.773e0

MQ
type: SiteQuality
SIO_000300: 5.38e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.21e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

FS
type: SiteQuality
SIO_000300: 5.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 4.837e1

MQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.704968944099378e-5
allele num: 10304
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.17e0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.909012e6

MQ
type: SiteQuality
SIO_000300: 5.157e1

FS
type: SiteQuality
SIO_000300: 2.895e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.468e0

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.539e0

MQ
type: SiteQuality
SIO_000300: 5.218e1

FS
type: SiteQuality
SIO_000300: 5.912e0

VQSLOD
type: SiteQuality
SIO_000300: -1.315e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

DP
type: SiteQuality
SIO_000300: 1.908557e6

QD
type: SiteQuality
SIO_000300: 1.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.908178e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.308e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 7.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.569e0

VQSLOD
type: SiteQuality
SIO_000300: -2.033e0

MQ
type: SiteQuality
SIO_000300: 5.408e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.232e0

BaseQRankSum
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SIO_000300: -2.9e0

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50271992306074e-5
allele num: 66546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.126e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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African
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FS
type: SiteQuality
SIO_000300: 2.357e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.508837321149453e-5
allele num: 66536
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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FS
type: SiteQuality
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ClippingRankSum
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DP
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ReadPosRankSum
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SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.289e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.675e0

MQ
type: SiteQuality
SIO_000300: 5.414e1

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7826
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.023913370431643e-5
allele num: 66490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.13e0

MQ
type: SiteQuality
SIO_000300: 5.039e1

FS
type: SiteQuality
SIO_000300: 5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.683e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 1.904984e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.209e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7818
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504528631179851e-5
allele num: 66466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.337999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.102e1

DP
type: SiteQuality
SIO_000300: 1.902549e6

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010778587342687e-5
allele num: 66428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.641e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.383e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.177e1

DP
type: SiteQuality
SIO_000300: 1.900705e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 827
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66220
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.212e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.3968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.917e0

QD
type: SiteQuality
SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 5.478e1

DP
type: SiteQuality
SIO_000300: 1.884683e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1964
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GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 2645
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.530456075910621e-4
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.53035336756267e-5
allele num: 66220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

MQ
type: SiteQuality
SIO_000300: 5.272e1

VQSLOD
type: SiteQuality
SIO_000300: -1.057e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 7.49e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

DP
type: SiteQuality
SIO_000300: 1.88317e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 1653
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7367
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variant carriers: 0

GenotypeQuality
all individuals: 418
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GenotypeQuality
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GenotypeQuality
all individuals: 210
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 378
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GenotypeQuality
all individuals: 823
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GenotypeQuality
all individuals: 7817
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1952
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GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.48594004183128e-4
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66068
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

QD
type: SiteQuality
SIO_000300: 1.032e1

DP
type: SiteQuality
SIO_000300: 1.877704e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

VQSLOD
type: SiteQuality
SIO_000300: -1.111e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.302e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512538947877908e-5
allele num: 66114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 2.769e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.174e0

DP
type: SiteQuality
SIO_000300: 1.874111e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

QD
type: SiteQuality
SIO_000300: 1.03e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 275
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512996641147457e-5
allele num: 66094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.692e0

FS
type: SiteQuality
SIO_000300: 7.666e0

MQ
type: SiteQuality
SIO_000300: 5.51e1

DP
type: SiteQuality
SIO_000300: 1.870301e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.713e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

QD
type: SiteQuality
SIO_000300: 9.16e0

VQSLOD
type: SiteQuality
SIO_000300: -1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.24e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1947
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GenotypeQuality
all individuals: 180
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 823
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 18
allele frequency: 2.729919922348944e-4
allele num: 65936
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596503375454388e-4
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

MQ
type: SiteQuality
SIO_000300: 5.393e1

QD
type: SiteQuality
SIO_000300: 1.292e1

VQSLOD
type: SiteQuality
SIO_000300: -1.038e0

DP
type: SiteQuality
SIO_000300: 1.855405e6

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

FS
type: SiteQuality
SIO_000300: 2.944e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517036317849449e-5
allele num: 65918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.729e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.582e1

VQSLOD
type: SiteQuality
SIO_000300: -2.226e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.19e0

DP
type: SiteQuality
SIO_000300: 1.853503e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

DP
type: SiteQuality
SIO_000300: 1.851401e6

VQSLOD
type: SiteQuality
SIO_000300: -9.743000000000001e-1

FS
type: SiteQuality
SIO_000300: 8.69e-1

MQ
type: SiteQuality
SIO_000300: 5.417e1

QD
type: SiteQuality
SIO_000300: 1.217e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.047e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1944
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517496737382015e-5
allele num: 65898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.081e0

FS
type: SiteQuality
SIO_000300: 1.088e0

MQ
type: SiteQuality
SIO_000300: 5.432e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

DP
type: SiteQuality
SIO_000300: 1.849622e6

QD
type: SiteQuality
SIO_000300: 1.164e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 265
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GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.011263073209976e-4
allele num: 9944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517496737382015e-5
allele num: 65898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

MQ
type: SiteQuality
SIO_000300: 5.432e1

FS
type: SiteQuality
SIO_000300: 1.088e0

QD
type: SiteQuality
SIO_000300: 1.164e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.849622e6

VQSLOD
type: SiteQuality
SIO_000300: -1.081e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

GenotypeQuality
all individuals: 1939
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.727975270479134e-4
allele num: 6470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.03905181583346e-5
allele num: 65810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.45e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQ
type: SiteQuality
SIO_000300: 5.355e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.086e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

FS
type: SiteQuality
SIO_000300: 1.652e0

DP
type: SiteQuality
SIO_000300: 1.843189e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65246
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.624e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.133e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.584e0

QD
type: SiteQuality
SIO_000300: 1.176e1

VQSLOD
type: SiteQuality
SIO_000300: -1.169e0

DP
type: SiteQuality
SIO_000300: 1.822776e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65276
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.427479062993082e-4
allele num: 16478
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.448e1

DP
type: SiteQuality
SIO_000300: 1.822685e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.609e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.082465639316951e-4
allele num: 9604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65154
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 1895
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7824
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variant carriers: 7

GenotypeQuality
all individuals: 3075
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64964
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.082725060827251e-4
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

FS
type: SiteQuality
SIO_000300: 1.338e0

QD
type: SiteQuality
SIO_000300: 1.155e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

VQSLOD
type: SiteQuality
SIO_000300: -1.106e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e-1

MQ
type: SiteQuality
SIO_000300: 5.531e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 1.825731e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 15256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.833163e6

VQSLOD
type: SiteQuality
SIO_000300: -1.555e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.638e1

MQ
type: SiteQuality
SIO_000300: 4.84e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.268e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3236
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GenotypeQuality
all individuals: 823
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.100836635843241e-4
allele num: 9084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53168
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

DP
type: SiteQuality
SIO_000300: 1.227004e6

VQSLOD
type: SiteQuality
SIO_000300: -1.521e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.446e1

GenotypeQuality
all individuals: 824
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5072
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3200
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 794
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GenotypeQuality
all individuals: 2219
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variant carriers: 1

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.886080724254998e-5
allele num: 53020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

DP
type: SiteQuality
SIO_000300: 1.229573e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

QD
type: SiteQuality
SIO_000300: 7.57e0

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.491e-1

GenotypeQuality
all individuals: 948
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
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variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 767
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GenotypeQuality
all individuals: 556
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GenotypeQuality
all individuals: 6785
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GenotypeQuality
all individuals: 2228
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 739
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variant carriers: 1

GenotypeQuality
all individuals: 552
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variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 9
allele frequency: 9.28026397195298e-4
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.5056967572305e-3
allele num: 9128
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.863377184809749e-5
allele num: 53666
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

DP
type: SiteQuality
SIO_000300: 1.289121e6

GenotypeQuality
all individuals: 5552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6683
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 262
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variant carriers: 2

GenotypeQuality
all individuals: 433
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variant carriers: 3

GenotypeQuality
all individuals: 20864
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GenotypeQuality
all individuals: 3062
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variant carriers: 2

GenotypeQuality
all individuals: 752
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.75e1
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GenotypeQuality
all individuals: 2295
bin: 9.75e1
variant carriers: 90

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9156
num of homozygotes: 0

South Asian
type: Population
allele count: 97
allele frequency: 6.74547983310153e-3
allele num: 14380
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 1.296255e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

FS
type: SiteQuality
SIO_000300: 1.133e0

QD
type: SiteQuality
SIO_000300: 1.374e1

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
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variant carriers: 0

GenotypeQuality
all individuals: 188
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 27

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24199
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54250
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 3.036876355748373e-3
allele num: 9220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6662
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 1.327375e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.79e0

QD
type: SiteQuality
SIO_000300: 1.489e1

GenotypeQuality
all individuals: 777
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9072
bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 2208
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3133
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.668647736444347e-5
allele num: 54516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.344588e6

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.53e-1

QD
type: SiteQuality
SIO_000300: 1.341e1

GenotypeQuality
all individuals: 2207
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8723
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 315
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GenotypeQuality
all individuals: 782
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GenotypeQuality
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GenotypeQuality
all individuals: 262
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GenotypeQuality
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GenotypeQuality
all individuals: 515
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GenotypeQuality
all individuals: 766
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55162
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.002204850671477e-4
allele num: 9978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.39e-1

FS
type: SiteQuality
SIO_000300: 4.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.37451e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 8.148299042574863e-4
allele num: 9818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 4.016e0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.236e0

DP
type: SiteQuality
SIO_000300: 1.523849e6

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 263
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607872142007267e-5
allele num: 62194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 7.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.074e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.573293e6

MQRankSum
type: SiteQuality
SIO_000300: -4.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

GenotypeQuality
all individuals: 4135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2205
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variant carriers: 1

GenotypeQuality
all individuals: 439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.502e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 1.632621e6

MQRankSum
type: SiteQuality
SIO_000300: -1.973e0

FS
type: SiteQuality
SIO_000300: 1.606e0

VQSLOD
type: SiteQuality
SIO_000300: -1.447e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 1141
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GenotypeQuality
all individuals: 49380
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GenotypeQuality
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GenotypeQuality
all individuals: 858
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531065315246348e-5
allele num: 65314
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.739e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 1.39e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.642334e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 453
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 915
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 262
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GenotypeQuality
all individuals: 4252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50354
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.219660934260276e-4
allele num: 16398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

DP
type: SiteQuality
SIO_000300: 1.655874e6

FS
type: SiteQuality
SIO_000300: 3.271e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.112e1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 50413
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 865
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variant carriers: 0

GenotypeQuality
all individuals: 263
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GenotypeQuality
all individuals: 2207
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514096235956757e-5
allele num: 66046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 6.82e0

DP
type: SiteQuality
SIO_000300: 1.65871e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

FS
type: SiteQuality
SIO_000300: 2.721e0

VQSLOD
type: SiteQuality
SIO_000300: -2.165e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e0

GenotypeQuality
all individuals: 2207
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66038
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.928640308582449e-4
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.658711e6

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 1.083e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.69e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 861
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GenotypeQuality
all individuals: 50315
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66020
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 5.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.706e0

MQRankSum
type: SiteQuality
SIO_000300: -1.848e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

DP
type: SiteQuality
SIO_000300: 1.65808e6

GenotypeQuality
all individuals: 446
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 50149
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6560
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.53031555106663e-5
allele num: 65346
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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VQSLOD
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ClippingRankSum
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QD
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MQ
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65144
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.850252867891945e-4
allele num: 16214
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
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allele frequency: 8.776549060909251e-5
allele num: 11394
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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DP
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.162166994457357e-3
allele num: 11186
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6460
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South Asian
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African
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allele num: 10066
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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BaseQRankSum
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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African
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Other
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QD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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QD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 1.211093e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.268e1