5-36168436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168436
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168436
    reference: chr 5
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1672G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8631G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.558G>A
  hgvsp: ENSP00000274254.5:p.Met186Ile
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*137G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1672G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1672G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.558G>A
  hgvsp: ENSP00000274255.6:p.Met186Ile
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4578G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met186Ile
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

5-36168442-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168442
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168442
    reference: chr 5
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*143A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4584A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.564A>G
  hgvsp: ENST00000274255.6:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1678A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1678A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8625A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.564A>G
  hgvsp: ENST00000274254.5:c.564A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1678A>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu188Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

5-36168445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168445
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168445
    reference: chr 5
allele count: 8
allele frequency: 6.590002965501334e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.567G>A
  hgvsp: ENST00000274255.6:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*146G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1681G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.567G>A
  hgvsp: ENST00000274254.5:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1681G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1681G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8622G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4587G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser189Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-36168448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168448
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168448
    reference: chr 5
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4590C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.570C>T
  hgvsp: ENST00000274255.6:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*149C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1684C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.570C>T
  hgvsp: ENST00000274254.5:c.570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1684C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1684C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8619C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn190Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

5-36168473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168473
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168473
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1709C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4615C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8594C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*174C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.595C>T
  hgvsp: ENSP00000274255.6:p.His199Tyr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.595C>T
  hgvsp: ENSP00000274254.5:p.His199Tyr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1709C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1709C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46559
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His199Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

5-36168475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168475
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168475
    reference: chr 5
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8592C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.597C>T
  hgvsp: ENST00000274254.5:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.597C>T
  hgvsp: ENST00000274255.6:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*176C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1711C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1711C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4617C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1711C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46559
  bin: 9.75e1
  variant carriers: 2
hgvs: p.His199His
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

5-36168476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168476
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168476
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4618G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1712G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.598G>A
  hgvsp: ENSP00000274254.5:p.Gly200Ser
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.598G>A
  hgvsp: ENSP00000274255.6:p.Gly200Ser
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8591G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1712G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*177G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1712G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly200Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

5-36168504-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168504
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168504
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*205A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1740A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.626A>G
  hgvsp: ENSP00000274254.5:p.Gln209Arg
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.626A>G
  hgvsp: ENSP00000274255.6:p.Gln209Arg
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4646A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8563A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1740A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1740A>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln209Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-36168511-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168511
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168511
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.633A>T
  hgvsp: ENST00000274255.6:c.633A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1747A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1747A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8556A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*212A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1747A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.633A>T
  hgvsp: ENST00000274254.5:c.633A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4653A>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu211Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-36168515-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168515
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168515
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8552C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4657C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1751C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*216C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1751C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.637C>G
  hgvsp: ENSP00000274255.6:p.Leu213Val
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.637C>G
  hgvsp: ENSP00000274254.5:p.Leu213Val
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1751C>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8626
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu213Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

5-36168528-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168528
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168528
    reference: chr 5
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8539G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1764G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*229G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1764G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.650G>A
  hgvsp: ENSP00000274255.6:p.Arg217Gln
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1764G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4670G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.650G>A
  hgvsp: ENSP00000274254.5:p.Arg217Gln
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8625
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5984
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg217Gln
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

5-36168530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168530
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168530
    reference: chr 5
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*231C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1766C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1766C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8537C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4672C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.652C>T
  hgvsp: ENSP00000274254.5:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.652C>T
  hgvsp: ENSP00000274255.6:p.Leu218Phe
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1766C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu218Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

5-36168534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168534
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168534
    reference: chr 5
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.656C>T
  hgvsp: ENSP00000274254.5:p.Ser219Leu
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8533C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.656C>T
  hgvsp: ENSP00000274255.6:p.Ser219Leu
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1770C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*235C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4676C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1770C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1770C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8623
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5971
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser219Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

5-36168535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168535
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168535
    reference: chr 5
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1771G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.657G>A
  hgvsp: ENST00000274255.6:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8532G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1771G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*236G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.657G>A
  hgvsp: ENST00000274254.5:c.657G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4677G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1771G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8622
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46558
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser219Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS

5-36168541-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168541
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168541
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.663C>G
  hgvsp: ENST00000274254.5:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*242C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8526C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1777C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1777C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.663C>G
  hgvsp: ENST00000274255.6:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1777C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4683C>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46559
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro221Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

5-36168541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168541
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168541
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4683C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1777C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.663C>T
  hgvsp: ENST00000274254.5:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1777C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*242C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1777C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.663C>T
  hgvsp: ENST00000274255.6:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8526C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro221Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-36168552-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168552
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168552
    reference: chr 5
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8515G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1788G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1788G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1788G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4694G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+3G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+3G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+3G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 9.25e1
  variant carriers: 0
hgvs: c.671+3G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

5-36168558-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168558
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168558
    reference: chr 5
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+9C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1794C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+9C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1794C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8509C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+9C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1794C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4700C>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/5-36168558-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168558
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168557
    reference: chr 5
allele count: 3
allele frequency: 2.47161759132627e-5
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4701delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1795delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1795delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1795delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+10delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+10delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+10delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8508delA
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: CA
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-36168560-GGCAGAGTGTCACAAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168560
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168545
    reference: chr 5
allele count: 3
allele frequency: 2.471576866040534e-5
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46554
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GGCAGAGTGTCACAAA
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

5-36168566-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168566
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168566
    reference: chr 5
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4708G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8501G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1802G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1802G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1802G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+17G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+17G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+17G>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-36168567-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168567
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168567
    reference: chr 5
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4709T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1803T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8500T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1803T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+18T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+18T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+18T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1803T>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-36168574-A-AGTTAATTCCATACTTTGCTATGGGGCCTTTGTGCTAAAACCTAGCATAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168574
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168623
    reference: chr 5
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: AGTTAATTCCATACTTTGCTATGGGGCCTTTGTGCTAAAACCTAGCATAG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/5-36168579-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168579
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168579
    reference: chr 5
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1815A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+30A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+30A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8488A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1815A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4721A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+30A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1815A>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

5-36168582-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168582
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168582
    reference: chr 5
allele count: 91510
allele frequency: 7.546220704896673e-1
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1818T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8485T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1818T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+33T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1818T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+33T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+33T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4724T>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7134
  bin: 9.75e1
  variant carriers: 7040
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 7.75e1
  variant carriers: 4212
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 6.25e1
  variant carriers: 4982
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.25e1
  variant carriers: 839
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 3.75e1
  variant carriers: 2187
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 4.25e1
  variant carriers: 2707
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 5.75e1
  variant carriers: 4509
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 6.75e1
  variant carriers: 4868
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 5.25e1
  variant carriers: 3933
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.75e1
  variant carriers: 1332
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 8.75e1
  variant carriers: 2694
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 8.25e1
  variant carriers: 3436
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 9.25e1
  variant carriers: 2197
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 4.75e1
  variant carriers: 3230
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.25e1
  variant carriers: 1858
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 7.25e1
  variant carriers: 4560
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 8.75e1
  variant carriers: 232
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 6.75e1
  variant carriers: 220
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 44
num of homozygotes: 36509
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

5-36168591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168591
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168591
    reference: chr 5
allele count: 14
allele frequency: 1.156508665554215e-4
allele num: 121054
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+42G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+42G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+42G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1827G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1827G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4733G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1827G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8476G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7924
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7785
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28663
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3949
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

5-36168597-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168597
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168597
    reference: chr 5
allele count: 5
allele frequency: 4.135991397137894e-5
allele num: 120890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+48G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1833G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+48G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+48G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4739G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1833G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8470G>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1833G>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7432
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3838
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3764
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

5-36168598-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168598
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168598
    reference: chr 5
allele count: 1
allele frequency: 8.27034090345204e-6
allele num: 120914
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+49A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1834A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1834A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4740A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1834A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8469A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+49A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+49A>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28635
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-36168599-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36168599
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36168599
    reference: chr 5
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*250+50A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.671+50A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-8468A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+4741A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.536+1835A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*115+1835A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.29+1835A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.671+50A>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28612
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

5-36170396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170396
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170396
    reference: chr 5
allele count: 10
allele frequency: 8.525003836251726e-5
allele num: 117302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-50G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-50G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6671G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-50G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6538G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-50G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-50G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-50G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13180
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7915
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

5-36170398-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170398
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170398
    reference: chr 5
allele count: 2
allele frequency: 1.70004420114923e-5
allele num: 117644
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-48A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-48A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-48A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6540A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-48A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-48A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6669A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-48A>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

5-36170398-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170398
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170398
    reference: chr 5
allele count: 1
allele frequency: 8.500221005746149e-6
allele num: 117644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-48A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-48A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6669A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6540A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-48A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-48A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-48A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-48A>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3977
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

5-36170401-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170401
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170401
    reference: chr 5
allele count: 1
allele frequency: 8.504269143109841e-6
allele num: 117588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-45G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-45G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-45G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-45G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-45G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-45G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6543G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6666G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

5-36170402-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170402
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170402
    reference: chr 5
allele count: 3
allele frequency: 2.550716751407145e-5
allele num: 117614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-44T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-44T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-44T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-44T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-44T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6665T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6544T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-44T>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

5-36170404-T-TCTTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170404
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170408
    reference: chr 5
allele count: 1
allele frequency: 8.485506754463376e-6
allele num: 117848
alternate allele: TCTTA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6549_224+6552dupTACT
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-39_*251-36dupTACT
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-39_672-36dupTACT
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-39_672-36dupTACT
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6660_281-6657dupTACT
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-39_537-36dupTACT
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-39_30-36dupTACT
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-39_*116-36dupTACT
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 15238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

5-36170427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170427
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170427
    reference: chr 5
allele count: 3
allele frequency: 2.50907448605791e-5
allele num: 119566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-19C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-19C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-19C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-19C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6640C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-19C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6569C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-19C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7915
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4016
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

5-36170428-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170428
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170428
    reference: chr 5
allele count: 4
allele frequency: 3.338842423331831e-5
allele num: 119802
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-18G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-18G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6570G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-18G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-18G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-18G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-18G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6639G>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9054
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

5-36170439-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170439
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170439
    reference: chr 5
allele count: 2
allele frequency: 1.659971448491086e-5
allele num: 120484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6581T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6628T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-7T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-7T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-7T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-7T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-7T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-7T>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 7.75e1
  variant carriers: 0
hgvs: c.672-7T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

5-36170443-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170443
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170443
    reference: chr 5
allele count: 16
allele frequency: 1.32604011271341e-4
allele num: 120660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6624C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.672-3C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.30-3C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*251-3C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*116-3C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.537-3C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6585C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.672-3C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31566
  bin: 6.25e1
  variant carriers: 0
hgvs: c.672-3C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

5-36170448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170448
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170448
    reference: chr 5
allele count: 1
allele frequency: 8.276090374906894e-6
allele num: 120830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.674C>T
  hgvsp: ENSP00000274254.5:p.Thr225Ile
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6619C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*118C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.539C>T
  hgvsp: ENSP00000423188.1:p.Thr180Ile
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.32C>T
  hgvsp: ENSP00000443492.1:p.Thr11Ile
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*253C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6590C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.674C>T
  hgvsp: ENSP00000274255.6:p.Thr225Ile
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr225Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

5-36170453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170453
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170453
    reference: chr 5
allele count: 2
allele frequency: 1.653876686954221e-5
allele num: 120928
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.679G>A
  hgvsp: ENSP00000274255.6:p.Ala227Thr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.679G>A
  hgvsp: ENSP00000274254.5:p.Ala227Thr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*258G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.37G>A
  hgvsp: ENSP00000443492.1:p.Ala13Thr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*123G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.544G>A
  hgvsp: ENSP00000423188.1:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6595G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6614G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala227Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

5-36170455-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170455
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170455
    reference: chr 5
allele count: 201
allele frequency: 1.661211940890608e-3
allele num: 120996
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.681A>T
  hgvsp: ENST00000274255.6:c.681A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*125A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.39A>T
  hgvsp: ENST00000546211.1:c.39A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*260A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6612A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.681A>T
  hgvsp: ENST00000274254.5:c.681A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.546A>T
  hgvsp: ENST00000513151.1:c.546A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6597A>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 16814
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 22887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8069
  bin: 9.75e1
  variant carriers: 201
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala227Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

5-36170457-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170457
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170457
    reference: chr 5
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.683A>G
  hgvsp: ENSP00000274255.6:p.Lys228Arg
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6610A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6599A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.41A>G
  hgvsp: ENSP00000443492.1:p.Lys14Arg
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.548A>G
  hgvsp: ENSP00000423188.1:p.Lys183Arg
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*262A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*127A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.683A>G
  hgvsp: ENSP00000274254.5:p.Lys228Arg
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys228Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/5-36170460-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170460
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170460
    reference: chr 5
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*265A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.551A>C
  hgvsp: ENSP00000423188.1:p.Asn184Thr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6607A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*130A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.686A>C
  hgvsp: ENSP00000274254.5:p.Asn229Thr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.686A>C
  hgvsp: ENSP00000274255.6:p.Asn229Thr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.44A>C
  hgvsp: ENSP00000443492.1:p.Asn15Thr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6602A>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7911
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn229Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

5-36170461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170461
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170461
    reference: chr 5
allele count: 1
allele frequency: 8.259957378619926e-6
allele num: 121066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.552C>T
  hgvsp: ENST00000513151.1:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6606C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*131C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*266C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.224+6603C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.45C>T
  hgvsp: ENST00000546211.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.687C>T
  hgvsp: ENST00000274254.5:c.687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.687C>T
  hgvsp: ENST00000274255.6:c.687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7648
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn229Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

5-36170465-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170465
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170465
    reference: chr 5
allele count: 2
allele frequency: 1.651336757104876e-5
allele num: 121114
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.691A>T
  hgvsp: ENSP00000274255.6:p.Asn231Tyr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.556A>T
  hgvsp: ENSP00000423188.1:p.Asn186Tyr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6602A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.691A>T
  hgvsp: ENSP00000274254.5:p.Asn231Tyr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*135A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.49A>T
  hgvsp: ENSP00000443492.1:p.Asn17Tyr
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*270A>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6602A>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn231Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

5-36170472-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170472
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170472
    reference: chr 5
allele count: 3
allele frequency: 2.47610558114198e-5
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.56T>C
  hgvsp: ENSP00000443492.1:p.Val19Ala
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*142T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.563T>C
  hgvsp: ENSP00000423188.1:p.Val188Ala
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.698T>C
  hgvsp: ENSP00000274254.5:p.Val233Ala
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*277T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.698T>C
  hgvsp: ENSP00000274255.6:p.Val233Ala
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6595T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6595T>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7912
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val233Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

5-36170475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170475
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170475
    reference: chr 5
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6592G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426675
  ensembl transcript: ENST00000513263
  gene symbol: SKP2
  hgvsc: ENST00000513263.1:c.*280G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.566G>A
  hgvsp: ENSP00000423188.1:p.Arg189Gln
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.701G>A
  hgvsp: ENSP00000274254.5:p.Arg234Gln
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.59G>A
  hgvsp: ENSP00000443492.1:p.Arg20Gln
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.701G>A
  hgvsp: ENSP00000274255.6:p.Arg234Gln
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6592G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*145G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4046
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7656
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7910
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg234Gln
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

5-36170487-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170487
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170487
    reference: chr 5
allele count: 2
allele frequency: 1.650028875505322e-5
allele num: 121210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*157C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.578C>G
  hgvsp: ENSP00000423188.1:p.Ser193Cys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.713C>G
  hgvsp: ENSP00000274255.6:p.Ser238Cys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6580C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.71C>G
  hgvsp: ENSP00000443492.1:p.Ser24Cys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.713C>G
  hgvsp: ENSP00000274254.5:p.Ser238Cys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6580C>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32085
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7661
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser238Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-36170497-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170497
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170497
    reference: chr 5
allele count: 2
allele frequency: 1.649865535958819e-5
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6570T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.588T>C
  hgvsp: ENST00000513151.1:c.588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*167T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.723T>C
  hgvsp: ENST00000274254.5:c.723T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6570T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.81T>C
  hgvsp: ENST00000546211.1:c.81T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.723T>C
  hgvsp: ENST00000274255.6:c.723T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser241Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

5-36170502-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170502
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170502
    reference: chr 5
allele count: 2
allele frequency: 1.649892756970797e-5
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.593T>G
  hgvsp: ENSP00000423188.1:p.Phe198Cys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.728T>G
  hgvsp: ENSP00000274254.5:p.Phe243Cys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.86T>G
  hgvsp: ENSP00000443492.1:p.Phe29Cys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.728T>G
  hgvsp: ENSP00000274255.6:p.Phe243Cys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*172T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6565T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6565T>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe243Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

5-36170506-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170506
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170506
    reference: chr 5
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*176T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.90T>G
  hgvsp: ENST00000546211.1:c.90T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6561T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.597T>G
  hgvsp: ENST00000513151.1:c.597T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.732T>G
  hgvsp: ENST00000274254.5:c.732T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.732T>G
  hgvsp: ENST00000274255.6:c.732T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6561T>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22971
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7908
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser244Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

5-36170507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170507
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170507
    reference: chr 5
allele count: 14
allele frequency: 1.154886821091533e-4
allele num: 121224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*177G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6560G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.733G>A
  hgvsp: ENSP00000274254.5:p.Glu245Lys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6560G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.598G>A
  hgvsp: ENSP00000423188.1:p.Glu200Lys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.733G>A
  hgvsp: ENSP00000274255.6:p.Glu245Lys
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.91G>A
  hgvsp: ENSP00000443492.1:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu245Lys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

5-36170514-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170514
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170514
    reference: chr 5
allele count: 3
allele frequency: 2.474839135456195e-5
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.98C>T
  hgvsp: ENSP00000443492.1:p.Ala33Val
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.740C>T
  hgvsp: ENSP00000274255.6:p.Ala247Val
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6553C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*184C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.605C>T
  hgvsp: ENSP00000423188.1:p.Ala202Val
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.740C>T
  hgvsp: ENSP00000274254.5:p.Ala247Val
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6553C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala247Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

5-36170520-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170520
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170520
    reference: chr 5
allele count: 9
allele frequency: 7.425742574257426e-5
allele num: 121200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.611A>G
  hgvsp: ENSP00000423188.1:p.Gln204Arg
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.746A>G
  hgvsp: ENSP00000274254.5:p.Gln249Arg
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.104A>G
  hgvsp: ENSP00000443492.1:p.Gln35Arg
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6547A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.746A>G
  hgvsp: ENSP00000274255.6:p.Gln249Arg
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*190A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6547A>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln249Arg
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

5-36170548-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170548
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170548
    reference: chr 5
allele count: 1
allele frequency: 8.265145879824779e-6
allele num: 120990
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.770+4T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.635+4T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*214+4T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6519T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.128+4T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.770+4T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6519T>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: c.770+4T>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

5-36170563-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170563
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170563
    reference: chr 5
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6504T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.770+19T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*214+19T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.635+19T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.128+19T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6504T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.770+19T>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/5-36170566-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170566
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170566
    reference: chr 5
allele count: 2
allele frequency: 1.657495193263939e-5
allele num: 120664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.770+22A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.635+22A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.128+22A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6501A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6501A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.770+22A>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*214+22A>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7559
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

5-36170570-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170570
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170570
    reference: chr 5
allele count: 12
allele frequency: 9.953384980342065e-5
allele num: 120562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6497T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*214+26T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.128+26T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6497T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.770+26T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.635+26T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.770+26T>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16694
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP

5-36170574-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170574
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170574
    reference: chr 5
allele count: 1
allele frequency: 8.299443937256203e-6
allele num: 120490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6493C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.770+30C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.770+30C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*214+30C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.635+30C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6493C>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.128+30C>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7904
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-36170583-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170583
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170582
    reference: chr 5
allele count: 1
allele frequency: 8.31766839119658e-6
allele num: 120226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.128+42delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.770+42delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.635+42delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.770+42delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*214+42delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6481delA
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6481delA
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CA
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

5-36170583-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170583
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170583
    reference: chr 5
allele count: 1
allele frequency: 8.31766839119658e-6
allele num: 120226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.770+39C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6484C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*214+39C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.635+39C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6484C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.770+39C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.128+39C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

5-36170588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170588
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170588
    reference: chr 5
allele count: 11
allele frequency: 9.165139143476087e-5
allele num: 120020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.770+44G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6479G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*214+44G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.635+44G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6479G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.770+44G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.128+44G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14506
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16696
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS

5-36170596-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36170596
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36170596
    reference: chr 5
allele count: 2
allele frequency: 1.675996379847819e-5
allele num: 119332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.128+52A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.770+52A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*214+52A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.770+52A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-6471A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.635+52A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-6471A>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5282
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6006
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4496
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10892
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

5-36171660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36171660
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36171660
    reference: chr 5
allele count: 3
allele frequency: 2.481800132362674e-5
allele num: 120880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*215-45C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.636-45C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-5407C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.129-45C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-5407C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.771-45C>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.771-45C>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8483
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10966
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

5-36171661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36171661
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36171661
    reference: chr 5
allele count: 14
allele frequency: 1.15754138210441e-4
allele num: 120946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-5406G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-5406G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.636-44G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.771-44G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*215-44G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.771-44G>A
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.129-44G>A
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21419
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10969
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

5-36171661-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36171661
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36171661
    reference: chr 5
allele count: 7
allele frequency: 5.787706910522051e-5
allele num: 120946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.129-44G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*215-44G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.636-44G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-5406G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.771-44G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.771-44G>T
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-5406G>T
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10969
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29986
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

5-36171664-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36171664
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36171664
    reference: chr 5
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.771-41T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-5403T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*215-41T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.129-41T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.771-41T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-5403T>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.636-41T>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10958
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

5-36171676-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36171676
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36171676
    reference: chr 5
allele count: 13
allele frequency: 1.073492981007432e-4
allele num: 121100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-5391A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.129-29A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-5391A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.771-29A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*215-29A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.636-29A>G
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.771-29A>G
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21774
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10959
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/5-36171688-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36171688
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36171689
    reference: chr 5
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-5375dupC
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.771-13dupC
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.771-13dupC
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.129-13dupC
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.636-13dupC
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*215-13dupC
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-5375dupC
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-36171700-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 36171700
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 36171700
    reference: chr 5
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274254
  ensembl transcript: ENST00000274254
  gene symbol: SKP2
  hgvsc: ENST00000274254.5:c.771-5T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000274255
  ensembl transcript: ENST00000274255
  gene symbol: SKP2
  hgvsc: ENST00000274255.6:c.771-5T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000421941
  ensembl transcript: ENST00000508514
  gene symbol: SKP2
  hgvsc: ENST00000508514.1:c.281-5367T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000443492
  ensembl transcript: ENST00000546211
  gene symbol: SKP2
  hgvsc: ENST00000546211.1:c.129-5T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000423188
  ensembl transcript: ENST00000513151
  gene symbol: SKP2
  hgvsc: ENST00000513151.1:c.636-5T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000424234
  ensembl transcript: ENST00000504386
  gene symbol: SKP2
  hgvsc: ENST00000504386.1:c.225-5367T>C
  variant of: http://identifiers.org/hgnc/10901
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145604
  ensembl protein: ENSP00000426004
  ensembl transcript: ENST00000509692
  gene symbol: SKP2
  hgvsc: ENST00000509692.1:c.*215-5T>C
  variant of: http://identifiers.org/hgnc/10901
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: c.771-5T>C
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46563
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.059458e6

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.7e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.903e0

QD
type: SiteQuality
SIO_000300: 1.095e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e0

GenotypeQuality
all individuals: 46563
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 4.059068e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.742e-1

FS
type: SiteQuality
SIO_000300: 7.665e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

GenotypeQuality
all individuals: 1441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46562
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.198968886757389e-4
allele num: 66724
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 4.059186e6

QD
type: SiteQuality
SIO_000300: 1.309e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.387e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

FS
type: SiteQuality
SIO_000300: 2.644e0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.529e0

QD
type: SiteQuality
SIO_000300: 1.51e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 4.057342e6

GenotypeQuality
all individuals: 1633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.705e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

QD
type: SiteQuality
SIO_000300: 9.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e0

DP
type: SiteQuality
SIO_000300: 4.057224e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.502e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

FS
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

DP
type: SiteQuality
SIO_000300: 4.057157e6

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

MQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 46559
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variant carriers: 1

GenotypeQuality
all individuals: 6017
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

DP
type: SiteQuality
SIO_000300: 4.056846e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
SIO_000300: 2.491e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.991e1

QD
type: SiteQuality
SIO_000300: 1.377e1

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.073e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.574e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.46e0

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.056358e6

MQRankSum
type: SiteQuality
SIO_000300: 8.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
type: SiteQuality
SIO_000300: 1.34e-1

DP
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BaseQRankSum
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SIO_000300: -7.613e0

FS
type: SiteQuality
SIO_000300: 2.241e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.46e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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MQRankSum
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MQ
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FS
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

VQSLOD
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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East Asian
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Other
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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MQ
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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African
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South Asian
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East Asian
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Other
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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QD
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

DP
type: SiteQuality
SIO_000300: 4.052948e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.828e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.873e0

QD
type: SiteQuality
SIO_000300: 1.773e1

MQ
type: SiteQuality
SIO_000300: 5.84e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

GenotypeQuality
all individuals: 1407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46548
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5745
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.126e0

FS
type: SiteQuality
SIO_000300: 5.174e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 4.052806e6

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

GenotypeQuality
all individuals: 118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46548
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1628
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.503e0

QD
type: SiteQuality
SIO_000300: 3.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.194000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.23e0

FS
type: SiteQuality
SIO_000300: 2.483e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 4.05119e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

MQ
type: SiteQuality
SIO_000300: 5.389e1

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46543
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.572e1

FS
type: SiteQuality
SIO_000300: 3.041e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.311e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 4.050871e6

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 88

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 69

GenotypeQuality
all individuals: 1157
bin: 6.25e1
variant carriers: 192

GenotypeQuality
all individuals: 55175
bin: 9.75e1
variant carriers: 52715

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 25

GenotypeQuality
all individuals: 671
bin: 7.75e1
variant carriers: 292

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 13

GenotypeQuality
all individuals: 380
bin: 7.25e1
variant carriers: 177

GenotypeQuality
all individuals: 710
bin: 8.25e1
variant carriers: 372

GenotypeQuality
all individuals: 779
bin: 9.25e1
variant carriers: 429

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 5

East Asian
type: Population
allele count: 3587
allele frequency: 4.161252900232019e-1
allele num: 8620
num of homozygotes: 756

Latino
type: Population
allele count: 6958
allele frequency: 6.021114572516442e-1
allele num: 11556
num of homozygotes: 2162

European (Non-Finnish)
type: Population
allele count: 58318
allele frequency: 8.74542618919081e-1
allele num: 66684
num of homozygotes: 25524

African
type: Population
allele count: 4447
allele frequency: 4.278429863382721e-1
allele num: 10394
num of homozygotes: 947

European (Finnish)
type: Population
allele count: 6186
allele frequency: 9.352887813728454e-1
allele num: 6614
num of homozygotes: 2891

Other
type: Population
allele count: 716
allele frequency: 7.902869757174393e-1
allele num: 906
num of homozygotes: 290

South Asian
type: Population
allele count: 11298
allele frequency: 6.850594227504244e-1
allele num: 16492
num of homozygotes: 3939

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.917e0

QD
type: SiteQuality
SIO_000300: 2.706e1

VQSLOD
type: SiteQuality
SIO_000300: 5.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-1

DP
type: SiteQuality
SIO_000300: 3.980973e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-3

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3860
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.802884615384615e-4
allele num: 66560
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.223e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.983e1

QD
type: SiteQuality
SIO_000300: 1.256e1

DP
type: SiteQuality
SIO_000300: 2.662453e6

GenotypeQuality
all individuals: 1218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28632
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1495
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3937
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.795085767269356e-4
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 1.657e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 2.644451e6

QD
type: SiteQuality
SIO_000300: 1.509e1

GenotypeQuality
all individuals: 449
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504302304591131e-5
allele num: 66476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 2.6426e6

QD
type: SiteQuality
SIO_000300: 1.171e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

FS
type: SiteQuality
SIO_000300: 8.808999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -3.343e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 4767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3818
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.201e0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

DP
type: SiteQuality
SIO_000300: 2.640593e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e0

QD
type: SiteQuality
SIO_000300: 1.637e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

GenotypeQuality
all individuals: 6763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3415
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2898
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64670
num of homozygotes: 0

Other
type: Population
allele count: 0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 8.916187834357044e-4
allele num: 10094
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.805917576611483e-5
allele num: 11356
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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BaseQRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

DP
type: SiteQuality
SIO_000300: 1.74661e6

VQSLOD
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MQ
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.083184312758217e-5
allele num: 64868
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.210653753026634e-4
allele num: 8260
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15624
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
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SIO_000300: 1.750274e6

BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.133e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64806
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15622
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Other
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allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
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VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

QD
type: SiteQuality
SIO_000300: 1.564e1

DP
type: SiteQuality
SIO_000300: 1.75833e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.885330170027679e-5
allele num: 10116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.083944982421514e-5
allele num: 64852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

FS
type: SiteQuality
SIO_000300: 5.137e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

QD
type: SiteQuality
SIO_000300: 1.206e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.539835545563734e-5
allele num: 64942
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.03692905733722e-5
allele num: 65856
num of homozygotes: 0

East Asian
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Other
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South Asian
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African
type: Population
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Latino
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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ClippingRankSum
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QD
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 3.895597974289053e-4
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European (Non-Finnish)
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Latino
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European (Finnish)
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allele num: 6524
num of homozygotes: 0

Other
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South Asian
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ClippingRankSum
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VQSLOD
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FS
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DP
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QD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66302
num of homozygotes: 0

South Asian
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European (Finnish)
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Latino
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African
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Other
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allele num: 900
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East Asian
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FS
type: SiteQuality
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.549786904300659e-3
allele num: 10324
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.884301e6

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e0

QD
type: SiteQuality
SIO_000300: 1.246e1

FS
type: SiteQuality
SIO_000300: 2.182e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e-1

GenotypeQuality
all individuals: 7913
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7612
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.886184e6

FS
type: SiteQuality
SIO_000300: 3.205e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.312e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

QD
type: SiteQuality
SIO_000300: 6.73e0

VQSLOD
type: SiteQuality
SIO_000300: -1.329e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.208e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4052
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31852
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.045e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

FS
type: SiteQuality
SIO_000300: 2.0336e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.223e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

DP
type: SiteQuality
SIO_000300: 1.887957e6

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.522997258604934e-3
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 183
allele frequency: 2.752210792275763e-3
allele num: 66492
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.598752598752599e-4
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.895752895752896e-4
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

FS
type: SiteQuality
SIO_000300: 5.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.332e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.897664e6

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4050
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1269
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.631e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: -1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

FS
type: SiteQuality
SIO_000300: 1.458e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.39e1

DP
type: SiteQuality
SIO_000300: 1.888467e6

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 1269
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variant carriers: 0

GenotypeQuality
all individuals: 178
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.888876e6

VQSLOD
type: SiteQuality
SIO_000300: -7.57e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 7.645e0

MQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
SIO_000300: 1.212e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 176
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7911
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31983
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503171692270691e-5
allele num: 66526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

FS
type: SiteQuality
SIO_000300: 2.339e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

QD
type: SiteQuality
SIO_000300: 7.52e0

DP
type: SiteQuality
SIO_000300: 1.889053e6

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7912
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.323e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

DP
type: SiteQuality
SIO_000300: 1.889474e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.135e0

QD
type: SiteQuality
SIO_000300: 1.091e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2851
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 3050
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
all individuals: 4050
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

DP
type: SiteQuality
SIO_000300: 1.890177e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.69e-1

FS
type: SiteQuality
SIO_000300: 3.827e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

BaseQRankSum
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SIO_000300: 3.26e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 5.425e0

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.06e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.002101471029721e-5
allele num: 66620
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.890769e6

FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: -3.94e-1

MQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele frequency: 1.924187030979411e-4
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.19e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.369e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

DP
type: SiteQuality
SIO_000300: 1.890965e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66616
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South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
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VQSLOD
type: SiteQuality
SIO_000300: 8.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

FS
type: SiteQuality
SIO_000300: 1.309e0

DP
type: SiteQuality
SIO_000300: 1.890916e6

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.109e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.225e0

MQRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.876878332525448e-4
allele num: 16504
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FS
type: SiteQuality
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QD
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Latino
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allele frequency: 2.594706798131811e-4
allele num: 11562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 9
allele frequency: 8.660508083140878e-4
allele num: 10392
num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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Latino
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South Asian
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European (Finnish)
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
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South Asian
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allele count: 0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.156336725254394e-4
allele num: 8648
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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FS
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ReadPosRankSum
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MQ
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SIO_000300: 5.894e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7907
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507431637975218e-5
allele num: 66338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 1.877722e6

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
all individuals: 7907
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016864271276435e-5
allele num: 66294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

DP
type: SiteQuality
SIO_000300: 1.873859e6

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 12

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.437835202340322e-4
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.120649651972158e-4
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.614e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.865818e6

GenotypeQuality
all individuals: 925
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2952
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GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 1.6626e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.295e0

QD
type: SiteQuality
SIO_000300: 1.141e1

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

DP
type: SiteQuality
SIO_000300: 1.85668e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.009e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.355e0

GenotypeQuality
all individuals: 23480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2824
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variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513408801985592e-5
allele num: 66076
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

FS
type: SiteQuality
SIO_000300: 2.167e0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.343e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.037e1

QD
type: SiteQuality
SIO_000300: 1.374e1

DP
type: SiteQuality
SIO_000300: 1.825495e6

GenotypeQuality
all individuals: 1017
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1825
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variant carriers: 0

GenotypeQuality
all individuals: 7904
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513408801985592e-5
allele num: 66076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQ
type: SiteQuality
SIO_000300: 6.037e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.343e0

QD
type: SiteQuality
SIO_000300: 1.374e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

FS
type: SiteQuality
SIO_000300: 2.167e0

DP
type: SiteQuality
SIO_000300: 1.825495e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 908
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
all individuals: 6742
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variant carriers: 1

GenotypeQuality
all individuals: 996
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.515748628247491e-4
allele num: 65974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

QD
type: SiteQuality
SIO_000300: 1.163e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.811794e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 2617
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524762137106611e-5
allele num: 65584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.534212948757288e-4
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.812854e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

QD
type: SiteQuality
SIO_000300: 1.318e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 394
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GenotypeQuality
all individuals: 402
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.161429451632779e-5
allele num: 16230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005891547432969e-5
allele num: 66536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.789e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.709726e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.45e1

GenotypeQuality
all individuals: 516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8501
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 2900
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.502494140272853e-4
allele num: 66556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.149305128520478e-5
allele num: 16262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.21e-1

DP
type: SiteQuality
SIO_000300: 2.711223e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.092485549132948e-4
allele num: 8650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

QD
type: SiteQuality
SIO_000300: 1.335e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

DP
type: SiteQuality
SIO_000300: 2.711223e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2913
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2395
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

FS
type: SiteQuality
SIO_000300: 4.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 2.712673e6

QD
type: SiteQuality
SIO_000300: 1.213e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.38728323699422e-3
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.111722283339445e-5
allele num: 16362
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.55e-1

QD
type: SiteQuality
SIO_000300: 1.468e1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

FS
type: SiteQuality
SIO_000300: 6.25e-1

DP
type: SiteQuality
SIO_000300: 2.723503e6

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10951
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2924
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.726598e6

FS
type: SiteQuality
SIO_000300: 3.106e0

QD
type: SiteQuality
SIO_000300: 1.337e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e0

MQ
type: SiteQuality
SIO_000300: 5.998e1

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10950
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32061
bin: 6.25e1
variant carriers: 0