7-138281320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281320
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281320
    reference: chr 7
allele count: 1
allele frequency: 9.374355513058478e-6
allele num: 106674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-45G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-45G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.*585G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-45G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-45G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-45G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-45G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11973
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8754
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3618
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/7-138281321-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281321
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281321
    reference: chr 7
allele count: 1
allele frequency: 9.41105610871652e-6
allele num: 106258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-46G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-46G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-46G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-46G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-46G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-46G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.*584G>T
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10551
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11767
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

7-138281868-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281868
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281868
    reference: chr 7
allele count: 1
allele frequency: 9.344047841524949e-5
allele num: 10702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-593G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-593G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.*37G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-593G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-593G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-593G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-593G>C
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-138281875-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281875
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281875
    reference: chr 7
allele count: 1
allele frequency: 9.120758847136082e-5
allele num: 10964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-600T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-600T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-600T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.*30T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-600T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-600T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-600T>C
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

7-138281885-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281885
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281885
    reference: chr 7
allele count: 1
allele frequency: 8.963786303334529e-5
allele num: 11156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-610G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-610G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.*20G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-610G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-610G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-610G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-610G>C
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

7-138281890-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281890
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281890
    reference: chr 7
allele count: 3
allele frequency: 2.640845070422535e-4
allele num: 11360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-615T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-615T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-615T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-615T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-615T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.*15T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-615T>A
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

7-138281906-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281906
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281906
    reference: chr 7
allele count: 9089
allele frequency: 7.425653594771242e-1
allele num: 12240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-631A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-631A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-631A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-631A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.701A>G
  hgvsp: ENST00000441685.1:c.701A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-631A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-631A>G
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.25e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 983
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.5e0
  variant carriers: 510
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 473
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 2.75e1
  variant carriers: 751
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 672
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 3.75e1
  variant carriers: 895
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 157
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.25e1
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 33
hgvs: p.Ter234Ter
num of homozygotes: 3438
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

7-138281916-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281916
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281917
    reference: chr 7
allele count: 3
allele frequency: 2.450980392156863e-4
allele num: 12240
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-642_898-641insT
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-642_217-641insT
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-642_898-641insT
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-642_178-641insT
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.690_691insT
  hgvsp: ENSP00000393487.1:p.Lys231Ter
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-642_994-641insT
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-642_1354-641insT
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys231Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

7-138281952-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281952
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281952
    reference: chr 7
allele count: 2
allele frequency: 1.63371998039536e-4
allele num: 12242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-677T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.655T>C
  hgvsp: ENSP00000393487.1:p.Cys219Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-677T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-677T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-677T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-677T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-677T>C
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys219Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

7-138281955-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281955
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281955
    reference: chr 7
allele count: 1
allele frequency: 8.168599901976801e-5
allele num: 12242
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-680C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-680C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-680C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-680C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.652C>T
  hgvsp: ENSP00000393487.1:p.Arg218Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-680C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-680C>T
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg218Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

7-138281956-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281956
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281956
    reference: chr 7
allele count: 1
allele frequency: 8.172605426610003e-5
allele num: 12236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.651T>A
  hgvsp: ENSP00000393487.1:p.Cys217Ter
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-681T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-681T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-681T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-681T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-681T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-681T>A
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys217Ter
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

7-138281983-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138281983
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138281983
    reference: chr 7
allele count: 1
allele frequency: 8.245382585751979e-5
allele num: 12128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-708G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-708G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-708G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-708G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.624G>C
  hgvsp: ENST00000441685.1:c.624G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-708G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-708G>C
  variant of: http://identifiers.org/hgnc/27034
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu208Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-138282006-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138282006
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138282006
    reference: chr 7
allele count: 7
allele frequency: 5.95643294758339e-4
allele num: 11752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-731C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.613-12C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-731C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-731C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-731C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-731C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-731C>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-138282006-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138282006
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138282006
    reference: chr 7
allele count: 44
allele frequency: 3.744043567052417e-3
allele num: 11752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-731C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-731C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-731C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-731C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.613-12C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-731C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-731C>G
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

7-138282006-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138282006
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138282006
    reference: chr 7
allele count: 1
allele frequency: 8.509189925119128e-5
allele num: 11752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.178-731C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.217-731C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.613-12C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1354-731C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.898-731C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.994-731C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.898-731C>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

7-138305740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305740
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305740
    reference: chr 7
allele count: 16
allele frequency: 1.637901029830272e-4
allele num: 97686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4974G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10048
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19075
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7556
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

7-138305743-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305743
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305743
    reference: chr 7
allele count: 33470
allele frequency: 3.435780569926911e-1
allele num: 97416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+48T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+48T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+48T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+48T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+48T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4971T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+48T>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.5e0
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 3.25e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 7.5e0
  variant carriers: 4162
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 13681
  bin: 1.75e1
  variant carriers: 8045
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.75e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 9.75e1
  variant carriers: 2871
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 2.25e1
  variant carriers: 3645
genotype depth: GenotypeDepth
  all individuals: 18542
  bin: 1.25e1
  variant carriers: 10353
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 1423
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 2.75e1
  variant carriers: 504
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 2.5e0
  variant carriers: 153
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 478
genotype quality: GenotypeQuality
  all individuals: 4060
  bin: 3.25e1
  variant carriers: 967
genotype quality: GenotypeQuality
  all individuals: 22758
  bin: 9.75e1
  variant carriers: 22352
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 3.75e1
  variant carriers: 988
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.5e0
  variant carriers: 216
genotype quality: GenotypeQuality
  all individuals: 5139
  bin: 6.25e1
  variant carriers: 481
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 4.25e1
  variant carriers: 551
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.75e1
  variant carriers: 563
num of homozygotes: 5573
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-138305743-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305743
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305742
    reference: chr 7
allele count: 37
allele frequency: 3.798144042046481e-4
allele num: 97416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+47delG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+47delG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+47delG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4970delG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+47delG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+47delG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+47delG
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9044
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13681
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18542
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4060
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: AC
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

7-138305744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305744
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305744
    reference: chr 7
allele count: 1
allele frequency: 9.977849174831873e-6
allele num: 100222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+47G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+47G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+47G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4970G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+47G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+47G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+47G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13339
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7891
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8554
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

7-138305748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305748
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305748
    reference: chr 7
allele count: 1
allele frequency: 9.924573243350536e-6
allele num: 100760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+43G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+43G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+43G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+43G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+43G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+43G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4966G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8902
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4568
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4325
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7955
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-138305753-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305753
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305753
    reference: chr 7
allele count: 1
allele frequency: 9.848335631278313e-6
allele num: 101540
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+38A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+38A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+38A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+38A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+38A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+38A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4961A>G
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9151
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9994
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13020
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6763
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

7-138305757-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305757
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305755
    reference: chr 7
allele count: 21
allele frequency: 2.1256781925662e-4
allele num: 98792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+32_993+33delAG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+32_1353+33delAG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4955_177+4956delAG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+32_897+33delAG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+32_612+33delAG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+32_897+33delAG
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+32_216+33delAG
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16296
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14815
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4178
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: ACT
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

7-138305760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305760
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305760
    reference: chr 7
allele count: 1
allele frequency: 9.979442348761552e-6
allele num: 100206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+31G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+31G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+31G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+31G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+31G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+31G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4954G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6721
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

7-138305761-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305761
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305761
    reference: chr 7
allele count: 49
allele frequency: 4.72972972972973e-4
allele num: 103600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+30A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4953A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+30A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+30A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+30A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+30A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+30A>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17444
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3796
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18376
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

7-138305767-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305767
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305767
    reference: chr 7
allele count: 3
allele frequency: 2.8521448128993e-5
allele num: 105184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+24A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+24A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+24A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+24A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+24A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4947A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+24A>G
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23013
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

7-138305775-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305775
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305775
    reference: chr 7
allele count: 1
allele frequency: 9.115437905636987e-6
allele num: 109704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+16C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+16C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4939C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+16C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+16C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+16C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+16C>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

7-138305778-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305778
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305778
    reference: chr 7
allele count: 2
allele frequency: 1.799014140251142e-5
allele num: 111172
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+13A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4936A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+13A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+13A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+13A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+13A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+13A>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30563
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32433
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

7-138305782-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305782
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305782
    reference: chr 7
allele count: 42451
allele frequency: 3.6223462352379e-1
allele num: 117192
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+9A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+9A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4932A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+9A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+9A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+9A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+9A>G
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 7.5e0
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 1.75e1
  variant carriers: 3455
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 1.25e1
  variant carriers: 1138
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 5366
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 18897
  bin: 2.25e1
  variant carriers: 5834
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 831
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.75e1
  variant carriers: 1394
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 9.75e1
  variant carriers: 3077
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 2.75e1
  variant carriers: 6513
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.75e1
  variant carriers: 506
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 4.25e1
  variant carriers: 2276
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 3.75e1
  variant carriers: 3662
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 3.75e1
  variant carriers: 240
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 8.25e1
  variant carriers: 579
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 3.25e1
  variant carriers: 159
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 7.75e1
  variant carriers: 575
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.25e1
  variant carriers: 452
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.75e1
  variant carriers: 325
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 2.25e1
  variant carriers: 114
num of homozygotes: 7506
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

7-138305783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305783
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305783
    reference: chr 7
allele count: 1
allele frequency: 8.449371366770313e-6
allele num: 118352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1353+8C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4931C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.897+8C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.216+8C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.612+8C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.993+8C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.897+8C>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1353+8C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

7-138305798-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305798
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305798
    reference: chr 7
allele count: 1
allele frequency: 8.343623802689983e-6
allele num: 119852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.209T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4916T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.605T>C
  hgvsp: ENSP00000393487.1:p.Ile202Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1346T>C
  hgvsp: ENSP00000405482.2:p.Ile449Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.890T>C
  hgvsp: ENSP00000288513.5:p.Ile297Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.890T>C
  hgvsp: ENSP00000417018.1:p.Ile297Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.986T>C
  hgvsp: ENSP00000412830.1:p.Ile329Thr
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11564
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6033
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile449Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-138305806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305806
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305806
    reference: chr 7
allele count: 35944
allele frequency: 2.995533035535702e-1
allele num: 119992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.978A>G
  hgvsp: ENST00000421622.1:c.978A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.882A>G
  hgvsp: ENST00000288513.5:c.882A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.597A>G
  hgvsp: ENST00000441685.1:c.597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4908A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.201A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.882A>G
  hgvsp: ENST00000436657.1:c.882A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1338A>G
  hgvsp: ENST00000419765.3:c.1338A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 6.75e1
  variant carriers: 756
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 3.25e1
  variant carriers: 3752
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.25e1
  variant carriers: 1042
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 4.25e1
  variant carriers: 3583
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 4.75e1
  variant carriers: 3086
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 5.25e1
  variant carriers: 2312
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 5.75e1
  variant carriers: 1638
genotype depth: GenotypeDepth
  all individuals: 17138
  bin: 2.25e1
  variant carriers: 1765
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.25e1
  variant carriers: 561
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.75e1
  variant carriers: 840
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 3.75e1
  variant carriers: 4037
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11196
  bin: 2.75e1
  variant carriers: 3107
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.25e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 9.75e1
  variant carriers: 2811
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 334
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 22623
  bin: 6.25e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 7.75e1
  variant carriers: 264
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 18
hgvs: p.Ala446Ala
num of homozygotes: 5599
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

7-138305807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305807
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305807
    reference: chr 7
allele count: 3
allele frequency: 2.49488548475625e-5
allele num: 120246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.881C>T
  hgvsp: ENSP00000417018.1:p.Ala294Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.200C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.596C>T
  hgvsp: ENSP00000393487.1:p.Ala199Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.881C>T
  hgvsp: ENSP00000288513.5:p.Ala294Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1337C>T
  hgvsp: ENSP00000405482.2:p.Ala446Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.977C>T
  hgvsp: ENSP00000412830.1:p.Ala326Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4907C>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22475
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8776
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala446Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

7-138305814-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305814
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305814
    reference: chr 7
allele count: 5
allele frequency: 4.151582583280746e-5
allele num: 120436
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1330A>G
  hgvsp: ENSP00000405482.2:p.Met444Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.970A>G
  hgvsp: ENSP00000412830.1:p.Met324Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.874A>G
  hgvsp: ENSP00000288513.5:p.Met292Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.193A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.589A>G
  hgvsp: ENSP00000393487.1:p.Met197Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4900A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.874A>G
  hgvsp: ENSP00000417018.1:p.Met292Val
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11770
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43222
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met444Val
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

7-138305821-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305821
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305821
    reference: chr 7
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.963T>C
  hgvsp: ENST00000421622.1:c.963T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.186T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1323T>C
  hgvsp: ENST00000419765.3:c.1323T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.867T>C
  hgvsp: ENST00000288513.5:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.582T>C
  hgvsp: ENST00000441685.1:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4893T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.867T>C
  hgvsp: ENST00000436657.1:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11769
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile441Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-138305822-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305822
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305822
    reference: chr 7
allele count: 2
allele frequency: 1.658374792703151e-5
allele num: 120600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.581T>C
  hgvsp: ENSP00000393487.1:p.Ile194Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.185T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1322T>C
  hgvsp: ENSP00000405482.2:p.Ile441Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4892T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.866T>C
  hgvsp: ENSP00000417018.1:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.866T>C
  hgvsp: ENSP00000288513.5:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.962T>C
  hgvsp: ENSP00000412830.1:p.Ile321Thr
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile441Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

7-138305822-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305822
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305822
    reference: chr 7
allele count: 15
allele frequency: 1.243781094527363e-4
allele num: 120600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.866T>A
  hgvsp: ENSP00000288513.5:p.Ile289Asn
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.962T>A
  hgvsp: ENSP00000412830.1:p.Ile321Asn
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.866T>A
  hgvsp: ENSP00000417018.1:p.Ile289Asn
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4892T>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1322T>A
  hgvsp: ENSP00000405482.2:p.Ile441Asn
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.581T>A
  hgvsp: ENSP00000393487.1:p.Ile194Asn
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.185T>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22909
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8823
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile441Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-138305825-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305825
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305825
    reference: chr 7
allele count: 2
allele frequency: 1.658897496723677e-5
allele num: 120562
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1319G>C
  hgvsp: ENSP00000405482.2:p.Arg440Pro
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.578G>C
  hgvsp: ENSP00000393487.1:p.Arg193Pro
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.863G>C
  hgvsp: ENSP00000417018.1:p.Arg288Pro
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.182G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.959G>C
  hgvsp: ENSP00000412830.1:p.Arg320Pro
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.863G>C
  hgvsp: ENSP00000288513.5:p.Arg288Pro
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4889G>C
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22979
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg440Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

7-138305825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305825
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305825
    reference: chr 7
allele count: 15
allele frequency: 1.244173122542758e-4
allele num: 120562
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1319G>A
  hgvsp: ENSP00000405482.2:p.Arg440His
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.578G>A
  hgvsp: ENSP00000393487.1:p.Arg193His
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.959G>A
  hgvsp: ENSP00000412830.1:p.Arg320His
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4889G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.182G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.863G>A
  hgvsp: ENSP00000417018.1:p.Arg288His
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.863G>A
  hgvsp: ENSP00000288513.5:p.Arg288His
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20328
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22979
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11825
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg440His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

7-138305826-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305826
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305826
    reference: chr 7
allele count: 2
allele frequency: 1.658512314453935e-5
allele num: 120590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1318C>T
  hgvsp: ENSP00000405482.2:p.Arg440Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.862C>T
  hgvsp: ENSP00000417018.1:p.Arg288Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.862C>T
  hgvsp: ENSP00000288513.5:p.Arg288Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.577C>T
  hgvsp: ENSP00000393487.1:p.Arg193Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.958C>T
  hgvsp: ENSP00000412830.1:p.Arg320Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.181C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4888C>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11801
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8794
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg440Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-138305829-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305829
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305829
    reference: chr 7
allele count: 1
allele frequency: 8.290086714307032e-6
allele num: 120626
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.178T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.955T>C
  hgvsp: ENSP00000412830.1:p.Cys319Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.859T>C
  hgvsp: ENSP00000417018.1:p.Cys287Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.574T>C
  hgvsp: ENSP00000393487.1:p.Cys192Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.859T>C
  hgvsp: ENSP00000288513.5:p.Cys287Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1315T>C
  hgvsp: ENSP00000405482.2:p.Cys439Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4885T>C
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys439Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

7-138305830-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305830
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305830
    reference: chr 7
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.573G>C
  hgvsp: ENST00000441685.1:c.573G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.954G>C
  hgvsp: ENST00000421622.1:c.954G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1314G>C
  hgvsp: ENST00000419765.3:c.1314G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.858G>C
  hgvsp: ENST00000288513.5:c.858G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4884G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.858G>C
  hgvsp: ENST00000436657.1:c.858G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.177G>C
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8788
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu438Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

7-138305838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305838
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305838
    reference: chr 7
allele count: 59
allele frequency: 4.891475567494072e-4
allele num: 120618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.850G>A
  hgvsp: ENSP00000288513.5:p.Gly284Ser
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.169G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1306G>A
  hgvsp: ENSP00000405482.2:p.Gly436Ser
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.850G>A
  hgvsp: ENSP00000417018.1:p.Gly284Ser
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.946G>A
  hgvsp: ENSP00000412830.1:p.Gly316Ser
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.565G>A
  hgvsp: ENSP00000393487.1:p.Gly189Ser
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4876G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20314
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11802
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23197
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly436Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

7-138305839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305839
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305839
    reference: chr 7
allele count: 8
allele frequency: 6.632289300459286e-5
allele num: 120622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.168C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.564C>T
  hgvsp: ENST00000441685.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.849C>T
  hgvsp: ENST00000288513.5:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.945C>T
  hgvsp: ENST00000421622.1:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.849C>T
  hgvsp: ENST00000436657.1:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1305C>T
  hgvsp: ENST00000419765.3:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4875C>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20315
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser435Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/7-138305852-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305852
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305852
    reference: chr 7
allele count: 297
allele frequency: 2.465180364879895e-3
allele num: 120478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.836G>T
  hgvsp: ENSP00000288513.5:p.Gly279Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.836G>T
  hgvsp: ENSP00000417018.1:p.Gly279Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4862G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1292G>T
  hgvsp: ENSP00000405482.2:p.Gly431Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.932G>T
  hgvsp: ENSP00000412830.1:p.Gly311Val
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.155G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.551G>T
  hgvsp: ENSP00000393487.1:p.Gly184Val
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20152
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 23284
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11738
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly431Val
num of homozygotes: 3
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

7-138305858-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305858
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305858
    reference: chr 7
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.926C>G
  hgvsp: ENSP00000412830.1:p.Ala309Gly
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.545C>G
  hgvsp: ENSP00000393487.1:p.Ala182Gly
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4856C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1286C>G
  hgvsp: ENSP00000405482.2:p.Ala429Gly
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.149C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.830C>G
  hgvsp: ENSP00000288513.5:p.Ala277Gly
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.830C>G
  hgvsp: ENSP00000417018.1:p.Ala277Gly
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala429Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-138305859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305859
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305859
    reference: chr 7
allele count: 2
allele frequency: 1.661957786272229e-5
allele num: 120340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.544G>A
  hgvsp: ENSP00000393487.1:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.925G>A
  hgvsp: ENSP00000412830.1:p.Ala309Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.829G>A
  hgvsp: ENSP00000288513.5:p.Ala277Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4855G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.148G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1285G>A
  hgvsp: ENSP00000405482.2:p.Ala429Thr
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.829G>A
  hgvsp: ENSP00000417018.1:p.Ala277Thr
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23353
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala429Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

7-138305862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305862
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305862
    reference: chr 7
allele count: 4
allele frequency: 3.327510190499958e-5
allele num: 120210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.922C>T
  hgvsp: ENSP00000412830.1:p.Arg308Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1282C>T
  hgvsp: ENSP00000405482.2:p.Arg428Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.145C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4852C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.541C>T
  hgvsp: ENSP00000393487.1:p.Arg181Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.826C>T
  hgvsp: ENSP00000288513.5:p.Arg276Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.826C>T
  hgvsp: ENSP00000417018.1:p.Arg276Cys
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19885
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg428Cys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

7-138305862-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305862
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305862
    reference: chr 7
allele count: 1
allele frequency: 8.318775476249896e-6
allele num: 120210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.922C>A
  hgvsp: ENSP00000412830.1:p.Arg308Ser
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4852C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.541C>A
  hgvsp: ENSP00000393487.1:p.Arg181Ser
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.826C>A
  hgvsp: ENSP00000417018.1:p.Arg276Ser
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.145C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1282C>A
  hgvsp: ENSP00000405482.2:p.Arg428Ser
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.826C>A
  hgvsp: ENSP00000288513.5:p.Arg276Ser
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg428Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

7-138305866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305866
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305866
    reference: chr 7
allele count: 5
allele frequency: 4.161880504086967e-5
allele num: 120138
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1278G>A
  hgvsp: ENST00000419765.3:c.1278G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.141G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.822G>A
  hgvsp: ENST00000288513.5:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4848G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.918G>A
  hgvsp: ENST00000421622.1:c.918G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.537G>A
  hgvsp: ENST00000441685.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.822G>A
  hgvsp: ENST00000436657.1:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr426Thr
num of homozygotes: 1
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

7-138305867-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305867
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305867
    reference: chr 7
allele count: 2
allele frequency: 1.665223472990075e-5
allele num: 120104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.821C>G
  hgvsp: ENSP00000288513.5:p.Thr274Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.917C>G
  hgvsp: ENSP00000412830.1:p.Thr306Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.140C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.821C>G
  hgvsp: ENSP00000417018.1:p.Thr274Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.536C>G
  hgvsp: ENSP00000393487.1:p.Thr179Arg
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4847C>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1277C>G
  hgvsp: ENSP00000405482.2:p.Thr426Arg
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19803
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr426Arg
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

7-138305869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305869
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305869
    reference: chr 7
allele count: 1
allele frequency: 8.333194446759221e-6
allele num: 120002
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1275C>T
  hgvsp: ENST00000419765.3:c.1275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.915C>T
  hgvsp: ENST00000421622.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.819C>T
  hgvsp: ENST00000436657.1:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4845C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.138C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.819C>T
  hgvsp: ENST00000288513.5:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.534C>T
  hgvsp: ENST00000441685.1:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr425Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

7-138305876-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305876
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305876
    reference: chr 7
allele count: 1
allele frequency: 8.357570287166115e-6
allele num: 119652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.908A>G
  hgvsp: ENSP00000412830.1:p.Tyr303Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.527A>G
  hgvsp: ENSP00000393487.1:p.Tyr176Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.812A>G
  hgvsp: ENSP00000417018.1:p.Tyr271Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1268A>G
  hgvsp: ENSP00000405482.2:p.Tyr423Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.812A>G
  hgvsp: ENSP00000288513.5:p.Tyr271Cys
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4838A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.131A>G
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr423Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-138305881-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305881
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305881
    reference: chr 7
allele count: 1
allele frequency: 8.385322331790435e-6
allele num: 119256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-1G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-1G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-1G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-1G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4833G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-1G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-1G>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42199
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8340
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1264-1G>T
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

7-138305896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305896
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305896
    reference: chr 7
allele count: 110
allele frequency: 9.37478693666053e-4
allele num: 117336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-16G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-16G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-16G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-16G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-16G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4818G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-16G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10565
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16129
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19924
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5866
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

7-138305897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305897
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305897
    reference: chr 7
allele count: 13
allele frequency: 1.109025763521583e-4
allele num: 117220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-17C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-17C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-17C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-17C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4817C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-17C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-17C>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16102
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 37026
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5928
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

7-138305905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305905
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305905
    reference: chr 7
allele count: 1
allele frequency: 8.606592649969876e-6
allele num: 116190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-25G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-25G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-25G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-25G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4809G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-25G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-25G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13580
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-138305907-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305907
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305907
    reference: chr 7
allele count: 1
allele frequency: 8.618163641691228e-6
allele num: 116034
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-27T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-27T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4807T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-27T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-27T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-27T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-27T>C
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16681
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6587
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS

7-138305914-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305914
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305914
    reference: chr 7
allele count: 1
allele frequency: 8.713837574067619e-6
allele num: 114760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-34A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-34A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-34A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-34A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-34A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4800A>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-34A>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8354
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

7-138305916-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305916
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305916
    reference: chr 7
allele count: 1
allele frequency: 8.737287247055534e-6
allele num: 114452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-36T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-36T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-36T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-36T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-36T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-36T>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4798T>C
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7757
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-138305920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305920
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305920
    reference: chr 7
allele count: 4
allele frequency: 3.61310835711963e-5
allele num: 110708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-40G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-40G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-40G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-40G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-40G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-40G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4794G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

7-138305921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305921
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305921
    reference: chr 7
allele count: 2
allele frequency: 1.810315175872119e-5
allele num: 110478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-41G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-41G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4793G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-41G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-41G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-41G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-41G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8497
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

7-138305921-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305921
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305921
    reference: chr 7
allele count: 1
allele frequency: 9.051575879360596e-6
allele num: 110478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-41G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-41G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4793G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-41G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-41G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-41G>C
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-41G>C
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18728
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9440
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5540
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

7-138305922-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305922
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305922
    reference: chr 7
allele count: 2
allele frequency: 1.810708530247886e-5
allele num: 110454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-42C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-42C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-42C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4792C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-42C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-42C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-42C>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9419
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

7-138305926-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305926
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305926
    reference: chr 7
allele count: 3
allele frequency: 2.743935901657337e-5
allele num: 109332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-46A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-46A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-46A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-46A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-46A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4788A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-46A>G
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18160
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16507
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5554
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

7-138305931-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305931
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305931
    reference: chr 7
allele count: 1
allele frequency: 9.369085764611089e-6
allele num: 106734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4783G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-51G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-51G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16345
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8430
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5433
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-138305932-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305932
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305932
    reference: chr 7
allele count: 84
allele frequency: 7.919298576411803e-4
allele num: 106070
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-52C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-52C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-52C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4782C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-52C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-52C>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-52C>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17618
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5637
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9407
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

7-138305932-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138305932
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138305932
    reference: chr 7
allele count: 1
allele frequency: 9.427736400490242e-6
allele num: 106070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.904-52C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1264-52C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+4782C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.523-52C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.808-52C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.127-52C>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.808-52C>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5390
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

7-138310665-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138310665
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138310665
    reference: chr 7
allele count: 14
allele frequency: 1.197502352236763e-4
allele num: 116910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.522+49A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.807+49A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1263+49A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.903+49A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+49A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.126+49A>G
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.807+49A>G
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16530
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11986
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14072
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4053
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/7-138310670-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138310670
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138310670
    reference: chr 7
allele count: 1
allele frequency: 8.547592997811816e-6
allele num: 116992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.903+44G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.807+44G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.522+44G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.126+44G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+44G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1263+44G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.807+44G>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

7-138310677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138310677
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138310677
    reference: chr 7
allele count: 5
allele frequency: 4.261339424207817e-5
allele num: 117334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+37G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.807+37G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.126+37G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1263+37G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.903+37G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.522+37G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.807+37G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24236
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

7-138310679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138310679
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138310679
    reference: chr 7
allele count: 1
allele frequency: 8.51397142711189e-6
allele num: 117454
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1263+35G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.807+35G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.522+35G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.903+35G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+35G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.807+35G>A
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.126+35G>A
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25255
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/7-138310682-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 138310682
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 138310682
    reference: chr 7
allele count: 23
allele frequency: 1.955183787276004e-4
allele num: 117636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000463557
  gene symbol: SVOPL
  hgvsc: ENST00000463557.1:n.177+32G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000393487
  ensembl transcript: ENST00000441685
  gene symbol: SVOPL
  hgvsc: ENST00000441685.1:c.522+32G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000405482
  ensembl transcript: ENST00000419765
  gene symbol: SVOPL
  hgvsc: ENST00000419765.3:c.1263+32G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000417018
  ensembl transcript: ENST00000436657
  gene symbol: SVOPL
  hgvsc: ENST00000436657.1:c.807+32G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000412830
  ensembl transcript: ENST00000421622
  gene symbol: SVOPL
  hgvsc: ENST00000421622.1:c.903+32G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl protein: ENSP00000288513
  ensembl transcript: ENST00000288513
  gene symbol: SVOPL
  hgvsc: ENST00000288513.5:c.807+32G>T
  variant of: http://identifiers.org/hgnc/27034
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157703
  ensembl transcript: ENST00000478865
  gene symbol: SVOPL
  hgvsc: ENST00000478865.1:n.126+32G>T
  variant of: http://identifiers.org/hgnc/27034
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26112
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16317
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7927
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 442
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.811989100817439e-5
allele num: 14680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.024e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

QD
type: SiteQuality
SIO_000300: 9.48e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.148834e6

GenotypeQuality
all individuals: 1723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3870
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7453
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8774
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.720755755928004e-5
allele num: 58114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.135e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.925e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.14708e6

VQSLOD
type: SiteQuality
SIO_000300: -2.444e0

GenotypeQuality
all individuals: 1174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.556178026766262e-4
allele num: 6426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.58e0

DP
type: SiteQuality
SIO_000300: 1.47936e5

VQSLOD
type: SiteQuality
SIO_000300: -1.827e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.395e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.96e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.471e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.27e-1

DP
type: SiteQuality
SIO_000300: 1.55191e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.999400119976005e-4
allele num: 3334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.124e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.37e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.65376e5

FS
type: SiteQuality
SIO_000300: 3.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1969
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GenotypeQuality
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GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
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GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 5.415162454873646e-3
allele num: 554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3384
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.188e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.69942e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.05e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 4458
bin: 9.75e1
variant carriers: 4455

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 57

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 126

GenotypeQuality
all individuals: 478
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variant carriers: 103

GenotypeQuality
all individuals: 175
bin: 6.75e1
variant carriers: 132

GenotypeQuality
all individuals: 652
bin: 7.5e0
variant carriers: 334

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 46

GenotypeQuality
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variant carriers: 17

GenotypeQuality
all individuals: 176
bin: 7.75e1
variant carriers: 169

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 234

South Asian
type: Population
allele count: 5549
allele frequency: 7.341889388727176e-1
allele num: 7558
num of homozygotes: 2073

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.0e-1
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 500
allele frequency: 8.960573476702509e-1
allele num: 558
num of homozygotes: 224

East Asian
type: Population
allele count: 68
allele frequency: 3.434343434343434e-1
allele num: 198
num of homozygotes: 14

Other
type: Population
allele count: 93
allele frequency: 7.045454545454546e-1
allele num: 132
num of homozygotes: 36

European (Non-Finnish)
type: Population
allele count: 2745
allele frequency: 7.6165371809101e-1
allele num: 3604
num of homozygotes: 1042

Latino
type: Population
allele count: 133
allele frequency: 7.074468085106383e-1
allele num: 188
num of homozygotes: 49

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.698e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.795e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

DP
type: SiteQuality
SIO_000300: 2.49229e5

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 1104
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.356545961002785e-4
allele num: 3590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.425e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

FS
type: SiteQuality
SIO_000300: 1.744e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

DP
type: SiteQuality
SIO_000300: 1.68551e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

QD
type: SiteQuality
SIO_000300: 1.454e1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 6
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.640612622128334e-4
allele num: 7574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.078e-1

DP
type: SiteQuality
SIO_000300: 1.68661e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.21e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

FS
type: SiteQuality
SIO_000300: 6.564e0

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 87
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 229
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 4377
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.319957761351637e-4
allele num: 7576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

QD
type: SiteQuality
SIO_000300: 1.149e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.68723e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.418e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 65
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.321003963011889e-4
allele num: 7570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.928e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.517e0

DP
type: SiteQuality
SIO_000300: 1.68574e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.291e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 200
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 219
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GenotypeQuality
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 63
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.334400854016547e-4
allele num: 7494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 1.66105e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.758e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

GenotypeQuality
all individuals: 763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 134
bin: 3.75e1
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GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.272727272727273e-2
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

DP
type: SiteQuality
SIO_000300: 1.47844e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

GenotypeQuality
all individuals: 231
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 87
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.905287623474724e-4
allele num: 3442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 5.93103448275862e-3
allele num: 7250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.14e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

QD
type: SiteQuality
SIO_000300: 1.375e1

DP
type: SiteQuality
SIO_000300: 1.47844e5

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.25e1
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GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.379310344827586e-4
allele num: 7250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.14e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

DP
type: SiteQuality
SIO_000300: 1.47844e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

GenotypeQuality
all individuals: 3345
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4340
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7066
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 5071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8126
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.513703443429375e-4
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.399776035834267e-4
allele num: 14288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.022504964330367e-4
allele num: 54388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

QD
type: SiteQuality
SIO_000300: 1.33e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 1.404427e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.388e0

GenotypeQuality
all individuals: 1673
bin: 5.25e1
variant carriers: 671

GenotypeQuality
all individuals: 4509
bin: 2.25e1
variant carriers: 706

GenotypeQuality
all individuals: 1007
bin: 7.75e1
variant carriers: 588

GenotypeQuality
all individuals: 738
bin: 1.25e1
variant carriers: 237

GenotypeQuality
all individuals: 582
bin: 5.75e1
variant carriers: 394

GenotypeQuality
all individuals: 894
bin: 8.25e1
variant carriers: 646

GenotypeQuality
all individuals: 2782
bin: 4.75e1
variant carriers: 894

GenotypeQuality
all individuals: 782
bin: 7.25e1
variant carriers: 421

GenotypeQuality
all individuals: 1746
bin: 6.75e1
variant carriers: 434

GenotypeQuality
all individuals: 579
bin: 9.25e1
variant carriers: 447

European (Non-Finnish)
type: Population
allele count: 19174
allele frequency: 3.544963762756989e-1
allele num: 54088
num of homozygotes: 3208

Latino
type: Population
allele count: 3190
allele frequency: 3.779620853080569e-1
allele num: 8440
num of homozygotes: 529

African
type: Population
allele count: 1585
allele frequency: 1.864705882352941e-1
allele num: 8500
num of homozygotes: 126

East Asian
type: Population
allele count: 2432
allele frequency: 3.746149106592729e-1
allele num: 6492
num of homozygotes: 427

European (Finnish)
type: Population
allele count: 2003
allele frequency: 4.15905315614618e-1
allele num: 4816
num of homozygotes: 401

Other
type: Population
allele count: 247
allele frequency: 3.449720670391062e-1
allele num: 716
num of homozygotes: 40

South Asian
type: Population
allele count: 4839
allele frequency: 3.368838763575606e-1
allele num: 14364
num of homozygotes: 842

QD
type: SiteQuality
SIO_000300: 1.654e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

FS
type: SiteQuality
SIO_000300: 8.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

DP
type: SiteQuality
SIO_000300: 1.441439e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 1746
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1673
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4509
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22758
bin: 9.75e1
variant carriers: 36

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14364
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 4.235294117647058e-3
allele num: 8500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.184834123222749e-4
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.12e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.19e-1

DP
type: SiteQuality
SIO_000300: 1.441439e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.654e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

GenotypeQuality
all individuals: 7207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4865
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4326
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6754
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.114330287497214e-4
allele num: 8974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14412
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.106e0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.66e-1

DP
type: SiteQuality
SIO_000300: 1.443395e6

QD
type: SiteQuality
SIO_000300: 7.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 638
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7083
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9050
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.91754288876591e-5
allele num: 14456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.278e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.257e1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: 5.71e-1

DP
type: SiteQuality
SIO_000300: 1.455361e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.192e0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4412
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.768659356207994e-5
allele num: 56540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14534
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.127e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

QD
type: SiteQuality
SIO_000300: 7.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.478891e6

GenotypeQuality
all individuals: 9693
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7075
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2087
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5785
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15454
bin: 6.25e1
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GenotypeQuality
all individuals: 4317
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 974
bin: 7.75e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 2.281021897810219e-4
allele num: 8768
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507386192342478e-4
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 3.088213922395001e-4
allele num: 55048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e-1

QD
type: SiteQuality
SIO_000300: 2.54e0

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

FS
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

DP
type: SiteQuality
SIO_000300: 1.520302e6

GenotypeQuality
all individuals: 9424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4319
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 979
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4018
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.791729377194868e-5
allele num: 55812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

FS
type: SiteQuality
SIO_000300: 2.285e0

VQSLOD
type: SiteQuality
SIO_000300: -4.091e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.53997e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.321e1

GenotypeQuality
all individuals: 6464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 195
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9259
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 9.75e1
variant carriers: 48

GenotypeQuality
all individuals: 622
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1007
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.400435255712731e-4
allele num: 14704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 7.108922564760551e-4
allele num: 57674
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.198294243070363e-4
allele num: 9380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 3.241e0

DP
type: SiteQuality
SIO_000300: 1.550585e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

GenotypeQuality
all individuals: 24477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4354
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.126452494873548e-5
allele num: 58520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7266
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.068e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

DP
type: SiteQuality
SIO_000300: 1.608315e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

VQSLOD
type: SiteQuality
SIO_000300: 5.14e-1

GenotypeQuality
all individuals: 366
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1786
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.643385373870173e-5
allele num: 60850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.387e0

DP
type: SiteQuality
SIO_000300: 1.713777e6

QD
type: SiteQuality
SIO_000300: 8.68e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 512
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.523809523809524e-5
allele num: 10500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622323166774821e-5
allele num: 61640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

QD
type: SiteQuality
SIO_000300: 1.746e1

FS
type: SiteQuality
SIO_000300: 3.637e0

VQSLOD
type: SiteQuality
SIO_000300: -2.02e-2

DP
type: SiteQuality
SIO_000300: 1.739393e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 642
bin: 2.75e1
variant carriers: 109

GenotypeQuality
all individuals: 17084
bin: 6.25e1
variant carriers: 514

GenotypeQuality
all individuals: 167
bin: 1.75e1
variant carriers: 89

GenotypeQuality
all individuals: 700
bin: 5.75e1
variant carriers: 310

GenotypeQuality
all individuals: 466
bin: 4.25e1
variant carriers: 208

GenotypeQuality
all individuals: 785
bin: 5.25e1
variant carriers: 409

GenotypeQuality
all individuals: 30290
bin: 9.75e1
variant carriers: 30001

GenotypeQuality
all individuals: 798
bin: 7.25e1
variant carriers: 317

GenotypeQuality
all individuals: 329
bin: 8.75e1
variant carriers: 240

GenotypeQuality
all individuals: 2679
bin: 6.75e1
variant carriers: 572

European (Finnish)
type: Population
allele count: 2617
allele frequency: 4.31421035278602e-1
allele num: 6066
num of homozygotes: 536

Latino
type: Population
allele count: 4297
allele frequency: 3.877458942429164e-1
allele num: 11082
num of homozygotes: 773

East Asian
type: Population
allele count: 3261
allele frequency: 3.886769964243146e-1
allele num: 8390
num of homozygotes: 602

Other
type: Population
allele count: 308
allele frequency: 3.615023474178404e-1
allele num: 852
num of homozygotes: 58

African
type: Population
allele count: 2757
allele frequency: 2.770854271356784e-1
allele num: 9950
num of homozygotes: 349

European (Non-Finnish)
type: Population
allele count: 23712
allele frequency: 3.660163003210669e-1
allele num: 64784
num of homozygotes: 4227

South Asian
type: Population
allele count: 5499
allele frequency: 3.422330097087379e-1
allele num: 16068
num of homozygotes: 961

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 6.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

QD
type: SiteQuality
SIO_000300: 1.795e1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

DP
type: SiteQuality
SIO_000300: 2.189325e6

GenotypeQuality
all individuals: 5599
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11507
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529332599253686e-5
allele num: 65388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.054403e6

FS
type: SiteQuality
SIO_000300: 1.093e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.797e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.129e0

QD
type: SiteQuality
SIO_000300: 1.184e1

VQSLOD
type: SiteQuality
SIO_000300: -7.679e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
all individuals: 932
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27951
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513042425709617e-5
allele num: 66092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 2.093022e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.337e-1

QD
type: SiteQuality
SIO_000300: 9.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 69

GenotypeQuality
all individuals: 865
bin: 7.25e1
variant carriers: 134

GenotypeQuality
all individuals: 634
bin: 2.25e1
variant carriers: 32

GenotypeQuality
all individuals: 647
bin: 8.25e1
variant carriers: 296

GenotypeQuality
all individuals: 207
bin: 2.75e1
variant carriers: 33

GenotypeQuality
all individuals: 3444
bin: 6.75e1
variant carriers: 194

GenotypeQuality
all individuals: 264
bin: 4.75e1
variant carriers: 95

GenotypeQuality
all individuals: 370
bin: 5.25e1
variant carriers: 123

GenotypeQuality
all individuals: 433
bin: 9.25e1
variant carriers: 270

GenotypeQuality
all individuals: 28773
bin: 9.75e1
variant carriers: 28334

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 186

Other
type: Population
allele count: 276
allele frequency: 3.094170403587444e-1
allele num: 892
num of homozygotes: 49

South Asian
type: Population
allele count: 4510
allele frequency: 2.75302160908314e-1
allele num: 16382
num of homozygotes: 651

European (Non-Finnish)
type: Population
allele count: 20323
allele frequency: 3.073282119525768e-1
allele num: 66128
num of homozygotes: 3151

East Asian
type: Population
allele count: 3302
allele frequency: 3.844899860270145e-1
allele num: 8588
num of homozygotes: 616

Latino
type: Population
allele count: 3733
allele frequency: 3.274561403508772e-1
allele num: 11400
num of homozygotes: 594

African
type: Population
allele count: 1300
allele frequency: 1.2697792537605e-1
allele num: 10238
num of homozygotes: 73

European (Finnish)
type: Population
allele count: 2500
allele frequency: 3.928346951602766e-1
allele num: 6364
num of homozygotes: 465

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

QD
type: SiteQuality
SIO_000300: 1.672e1

DP
type: SiteQuality
SIO_000300: 2.393835e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

FS
type: SiteQuality
SIO_000300: 1.147e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.528165187466039e-5
allele num: 66252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.38e-1

QD
type: SiteQuality
SIO_000300: 1.551e1

FS
type: SiteQuality
SIO_000300: 1.8888e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.507e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

DP
type: SiteQuality
SIO_000300: 1.631257e6

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

MQ
type: SiteQuality
SIO_000300: 5.839e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090875867949811e-5
allele num: 16418
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.028817748839453e-5
allele num: 66348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 1.63506e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.091e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.693679720822024e-5
allele num: 10316
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 1.132e1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.511e0

FS
type: SiteQuality
SIO_000300: 5.71e0

DP
type: SiteQuality
SIO_000300: 1.638266e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012048192771084e-5
allele num: 66400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.14e1

FS
type: SiteQuality
SIO_000300: 5.203e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.218e0

DP
type: SiteQuality
SIO_000300: 1.638875e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2019
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variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 9.75e1
variant carriers: 15

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.108433734939759e-4
allele num: 66400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.218e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.203e0

DP
type: SiteQuality
SIO_000300: 1.638875e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012774162448783e-5
allele num: 66384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
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MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.792e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.64038e6

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
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allele frequency: 1.453206742879287e-3
allele num: 10322
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Other
type: Population
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MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.204e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

FS
type: SiteQuality
SIO_000300: 1.792e0

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.686168151879117e-5
allele num: 10324
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Other
type: Population
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East Asian
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allele num: 8630
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

FS
type: SiteQuality
SIO_000300: 7.262e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

QD
type: SiteQuality
SIO_000300: 2.505e1

MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.963e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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East Asian
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African
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Other
type: Population
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MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505842669557885e-5
allele num: 66408
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South Asian
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East Asian
type: Population
allele count: 0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 1.640325e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 4.857e0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 8750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43966
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73460537727667e-4
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 54
allele frequency: 5.225469324559705e-3
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.518208379770475e-5
allele num: 66398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.98e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.323e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

DP
type: SiteQuality
SIO_000300: 1.642774e6

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505933377507379e-5
allele num: 66404
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.04025294904536e-4
allele num: 16446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

FS
type: SiteQuality
SIO_000300: 1.799e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.641502e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.117e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

GenotypeQuality
all individuals: 751
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 9.75e1
variant carriers: 293

GenotypeQuality
all individuals: 8708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 121
allele frequency: 1.823827324249367e-3
allele num: 66344
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.84402247626429e-4
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.378378378378379e-3
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 93
allele frequency: 5.65831102458019e-3
allele num: 16436
num of homozygotes: 1

Latino
type: Population
allele count: 75
allele frequency: 6.5058986814712e-3
allele num: 11528
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.036e1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.541e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.45e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

FS
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 1.640966e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

GenotypeQuality
all individuals: 908
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44076
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.587301587301587e-4
allele num: 6300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66302
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.628822e6

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.161e1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.695559433779329e-5
allele num: 10314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.098e0

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

DP
type: SiteQuality
SIO_000300: 1.628465e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1679
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1936
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020053152935492e-5
allele num: 66224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.219363492257042e-4
allele num: 16402
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

FS
type: SiteQuality
SIO_000300: 2.509e0

DP
type: SiteQuality
SIO_000300: 1.625889e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 43737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510026576467746e-5
allele num: 66224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.509e0

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

DP
type: SiteQuality
SIO_000300: 1.625889e6

GenotypeQuality
all individuals: 1167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.739432944859976e-4
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.220107369448512e-4
allele num: 16392
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.596933886937081e-4
allele num: 6262
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.501e0

DP
type: SiteQuality
SIO_000300: 1.622395e6

FS
type: SiteQuality
SIO_000300: 1.502e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.87e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.116e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

QD
type: SiteQuality
SIO_000300: 2.058e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8620
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66172
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.621029e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

FS
type: SiteQuality
SIO_000300: 3.265e0

QD
type: SiteQuality
SIO_000300: 9.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

GenotypeQuality
all individuals: 340
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43566
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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FS
type: SiteQuality
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QD
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 5.897e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.516300227445034e-5
allele num: 65950
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ClippingRankSum
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SIO_000300: 2.87e-1

MQ
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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SIO_000300: -9.724e-1

MQRankSum
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DP
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SIO_000300: 1.607704e6

ReadPosRankSum
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SIO_000300: -1.352e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 878
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.520496289989052e-5
allele num: 65768
num of homozygotes: 0

ClippingRankSum
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SIO_000300: 5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

MQRankSum
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DP
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SIO_000300: 1.595452e6

InbreedingCoeff
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SIO_000300: -5.0e-4

FS
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SIO_000300: 0.0e0

QD
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VQSLOD
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -2.557e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

Latino
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allele frequency: 1.780309773900659e-4
allele num: 11234
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.649102998369088e-3
allele num: 15942
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.542876539019348e-5
allele num: 64814
num of homozygotes: 0

East Asian
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allele frequency: 1.182592242194891e-4
allele num: 8456
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

VQSLOD
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QD
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MQRankSum
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SIO_000300: 2.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

DP
type: SiteQuality
SIO_000300: 1.510766e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.544735541275334e-5
allele num: 64736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8442
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.958175662218682e-4
allele num: 10042
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.16822429906542e-3
allele num: 856
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South Asian
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allele frequency: 6.270378730875344e-5
allele num: 15948
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

DP
type: SiteQuality
SIO_000300: 1.508409e6

FS
type: SiteQuality
SIO_000300: 2.399e0

InbreedingCoeff
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SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.231e1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64192
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Latino
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allele count: 1
allele frequency: 8.999280057595392e-5
allele num: 11112
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5892
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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QD
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DP
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64110
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 850
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South Asian
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allele num: 15786
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.907e1

ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 1.408379e6

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.505e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.207146306132303e-4
allele num: 8284
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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allele frequency: 1.208605269518975e-4
allele num: 8274
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European (Finnish)
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allele frequency: 0.0e0
allele num: 5720
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DP
type: SiteQuality
SIO_000300: 1.241695e6

MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 61526
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Other
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East Asian
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European (Finnish)
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Latino
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African
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South Asian
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allele frequency: 2.677017802168384e-4
allele num: 14942
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.087e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.121484e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.298e0

GenotypeQuality
all individuals: 4209
bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 842
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9440
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.513194269917064e-4
allele num: 7958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 2.111e0

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.118765e6

QD
type: SiteQuality
SIO_000300: 1.106e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 872
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1446
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
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variant carriers: 0

GenotypeQuality
all individuals: 8497
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.704210244033253e-5
allele num: 14916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.118765e6

FS
type: SiteQuality
SIO_000300: 2.111e0

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 1.106e1

GenotypeQuality
all individuals: 1682
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5517
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
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variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 497
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variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.628611445881242e-5
allele num: 61402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.705109293281481e-5
allele num: 14914
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e-1

DP
type: SiteQuality
SIO_000300: 1.115847e6

FS
type: SiteQuality
SIO_000300: 6.281e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

QD
type: SiteQuality
SIO_000300: 9.31e0

GenotypeQuality
all individuals: 9505
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8382
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variant carriers: 0

GenotypeQuality
all individuals: 3640
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variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
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variant carriers: 0

GenotypeQuality
all individuals: 7366
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variant carriers: 0

GenotypeQuality
all individuals: 5025
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variant carriers: 0

GenotypeQuality
all individuals: 351
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variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.810975609756098e-4
allele num: 7872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

DP
type: SiteQuality
SIO_000300: 1.094155e6

FS
type: SiteQuality
SIO_000300: 3.424e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

GenotypeQuality
all individuals: 878
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
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variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5603
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variant carriers: 0

GenotypeQuality
all individuals: 870
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.073883161512027e-4
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14308
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.077057e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.914e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

GenotypeQuality
all individuals: 4344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9080
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8451
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 916
bin: 9.75e1
variant carriers: 80

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
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variant carriers: 0

GenotypeQuality
all individuals: 3784
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.005631536604988e-4
allele num: 9944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.456230550669734e-5
allele num: 59128
num of homozygotes: 0

African
type: Population
allele count: 76
allele frequency: 8.193186718413108e-3
allele num: 9276
num of homozygotes: 2

Other
type: Population
allele count: 1
allele frequency: 1.329787234042553e-3
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.041261794113505e-5
allele num: 14202
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

FS
type: SiteQuality
SIO_000300: 7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

DP
type: SiteQuality
SIO_000300: 1.075911e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.461e1

GenotypeQuality
all individuals: 5637
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
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variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.005631536604988e-4
allele num: 9944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14202
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

DP
type: SiteQuality
SIO_000300: 1.075911e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

FS
type: SiteQuality
SIO_000300: 7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

QD
type: SiteQuality
SIO_000300: 1.461e1

GenotypeQuality
all individuals: 1776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4550
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 530
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.677146534289392e-4
allele num: 10878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15732
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.060728744939271e-4
allele num: 9880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.715573112770817e-5
allele num: 64804
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

FS
type: SiteQuality
SIO_000300: 7.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.471e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.377626e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

GenotypeQuality
all individuals: 2522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27797
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variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 4.75e1
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GenotypeQuality
all individuals: 5210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
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GenotypeQuality
all individuals: 2281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
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GenotypeQuality
all individuals: 1587
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542686125080991e-5
allele num: 64822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.991e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.747e0

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 5.843e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.491e0

QD
type: SiteQuality
SIO_000300: 3.87e0

DP
type: SiteQuality
SIO_000300: 1.398517e6

GenotypeQuality
all individuals: 35006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
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variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.97943075819182e-4
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 1.493e0

QD
type: SiteQuality
SIO_000300: 1.11e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.074e0

DP
type: SiteQuality
SIO_000300: 1.439419e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36383
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.194743130227001e-4
allele num: 8370
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.163e0

DP
type: SiteQuality
SIO_000300: 1.450277e6

FS
type: SiteQuality
SIO_000300: 2.093e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

QD
type: SiteQuality
SIO_000300: 5.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

MQ
type: SiteQuality
SIO_000300: 6.0e1