6-159692513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159692513
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 159692513
    reference: chr 6
allele count: 4
allele frequency: 8.573020703845e-5
allele num: 46658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000164694
  ensembl protein: ENSP00000333297
  ensembl transcript: ENST00000329629
  gene symbol: FNDC1
  hgvsc: ENST00000329629.8:c.*39C>T
  variant of: http://identifiers.org/hgnc/21184
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000164694
  ensembl protein: ENSP00000342460
  ensembl transcript: ENST00000340366
  gene symbol: FNDC1
  hgvsc: ENST00000340366.6:c.*39C>T
  variant of: http://identifiers.org/hgnc/21184
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000164694
  ensembl protein: ENSP00000297267
  ensembl transcript: ENST00000297267
  gene symbol: FNDC1
  hgvsc: ENST00000297267.9:c.*39C>T
  variant of: http://identifiers.org/hgnc/21184
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11163
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25842
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4384
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5285
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-159692521-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159692521
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 159692521
    reference: chr 6
allele count: 1
allele frequency: 2.351834430856068e-5
allele num: 42520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000164694
  ensembl protein: ENSP00000333297
  ensembl transcript: ENST00000329629
  gene symbol: FNDC1
  hgvsc: ENST00000329629.8:c.*47C>A
  variant of: http://identifiers.org/hgnc/21184
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000164694
  ensembl protein: ENSP00000297267
  ensembl transcript: ENST00000297267
  gene symbol: FNDC1
  hgvsc: ENST00000297267.9:c.*47C>A
  variant of: http://identifiers.org/hgnc/21184
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000164694
  ensembl protein: ENSP00000342460
  ensembl transcript: ENST00000340366
  gene symbol: FNDC1
  hgvsc: ENST00000340366.6:c.*47C>A
  variant of: http://identifiers.org/hgnc/21184
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27026
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10494
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6683
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3506
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

6-159692523-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159692523
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 159692523
    reference: chr 6
allele count: 1
allele frequency: 2.326880119136262e-5
allele num: 42976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000164694
  ensembl protein: ENSP00000342460
  ensembl transcript: ENST00000340366
  gene symbol: FNDC1
  hgvsc: ENST00000340366.6:c.*49A>G
  variant of: http://identifiers.org/hgnc/21184
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000164694
  ensembl protein: ENSP00000297267
  ensembl transcript: ENST00000297267
  gene symbol: FNDC1
  hgvsc: ENST00000297267.9:c.*49A>G
  variant of: http://identifiers.org/hgnc/21184
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000164694
  ensembl protein: ENSP00000333297
  ensembl transcript: ENST00000329629
  gene symbol: FNDC1
  hgvsc: ENST00000329629.8:c.*49A>G
  variant of: http://identifiers.org/hgnc/21184
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9893
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6624
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2470
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 13137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11788
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3507
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 477
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

6-160103475-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103475
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103475
    reference: chr 6
allele count: 1
allele frequency: 8.694593701636322e-6
allele num: 115014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.*19+31A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.*50A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.*19+31A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.*50A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*423A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.*50A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.*19+31A>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
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genotype depth: GenotypeDepth
  all individuals: 2754
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8931
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genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7939
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

6-160103483-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103483
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103483
    reference: chr 6
allele count: 12
allele frequency: 1.043351244196359e-4
allele num: 115014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*415G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.*42G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.*42G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.*42G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.*19+23G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.*19+23G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.*19+23G>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13363
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8867
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

6-160103498-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103498
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103498
    reference: chr 6
allele count: 1
allele frequency: 8.633043838596612e-6
allele num: 115834
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*400A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.*27A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.*19+8A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.*27A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.*19+8A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.*27A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.*19+8A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.576A>G
  variant of: http://identifiers.org/hgnc/11180
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24681
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7961
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
hgvs: c.*19+8A>G
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

6-160103511-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103511
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103511
    reference: chr 6
allele count: 4
allele frequency: 3.41087386588444e-5
allele num: 117272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.*14T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.*14T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.*14T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.*14T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.*14T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.*14T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*387T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.563T>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-160103519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103519
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103519
    reference: chr 6
allele count: 3
allele frequency: 2.531346507585602e-5
allele num: 118514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.568G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.*6G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.*6G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.*6G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.555G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*379G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.*6G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.*6G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.*6G>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25325
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

6-160103520-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103520
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103520
    reference: chr 6
allele count: 2
allele frequency: 1.683246646131057e-5
allele num: 118818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.554C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.*5C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.*5C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*378C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.*5C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.*5C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.*5C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.567C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.*5C>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

6-160103520-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103520
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103520
    reference: chr 6
allele count: 1
allele frequency: 8.416233230655287e-6
allele num: 118818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.*5C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.*5C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*378C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.554C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.*5C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.*5C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.*5C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.*5C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.567C>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

6-160103522-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103522
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103522
    reference: chr 6
allele count: 7
allele frequency: 5.869036639557307e-5
allele num: 119270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.*3C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*376C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.552C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.*3C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.565C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.*3C>T
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25415
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

6-160103524-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103524
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103524
    reference: chr 6
allele count: 1
allele frequency: 8.366240546148183e-6
allele num: 119528
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.*1A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.563A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*374A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.*1A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.*1A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.*1A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.*1A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.*1A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.550A>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3944
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

6-160103541-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103541
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103541
    reference: chr 6
allele count: 2
allele frequency: 1.656397005234214e-5
allele num: 120744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.546T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.653T>C
  hgvsp: ENSP00000356022.4:p.Met218Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.653T>C
  hgvsp: ENSP00000446252.1:p.Met218Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.515T>C
  hgvsp: ENSP00000442920.1:p.Met172Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.536T>C
  hgvsp: ENSP00000356021.2:p.Met179Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.536T>C
  hgvsp: ENSP00000337127.4:p.Met179Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*357T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.473T>C
  hgvsp: ENSP00000404804.2:p.Met158Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.533T>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met218Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

6-160103542-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103542
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103542
    reference: chr 6
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*356A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.535A>G
  hgvsp: ENSP00000356021.2:p.Met179Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.652A>G
  hgvsp: ENSP00000356022.4:p.Met218Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.545A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.472A>G
  hgvsp: ENSP00000404804.2:p.Met158Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.532A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.652A>G
  hgvsp: ENSP00000446252.1:p.Met218Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.535A>G
  hgvsp: ENSP00000337127.4:p.Met179Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.514A>G
  hgvsp: ENSP00000442920.1:p.Met172Val
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met218Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

6-160103555-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103555
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103555
    reference: chr 6
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*343A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.459A>G
  hgvsp: ENST00000444946.2:c.459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.519A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.532A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.522A>G
  hgvsp: ENST00000337404.4:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.501A>G
  hgvsp: ENST00000546087.1:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.639A>G
  hgvsp: ENST00000538183.2:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.522A>G
  hgvsp: ENST00000367054.2:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.639A>G
  hgvsp: ENST00000367055.4:c.639A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val213Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

6-160103557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103557
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103557
    reference: chr 6
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.637G>A
  hgvsp: ENSP00000446252.1:p.Val213Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.457G>A
  hgvsp: ENSP00000404804.2:p.Val153Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*341G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.520G>A
  hgvsp: ENSP00000356021.2:p.Val174Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.499G>A
  hgvsp: ENSP00000442920.1:p.Val167Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.520G>A
  hgvsp: ENSP00000337127.4:p.Val174Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.530G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.637G>A
  hgvsp: ENSP00000356022.4:p.Val213Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.517G>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3943
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val213Ile
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

6-160103562-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103562
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103562
    reference: chr 6
allele count: 5
allele frequency: 4.127387693780853e-5
allele num: 121142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.512A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*336A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.494A>G
  hgvsp: ENSP00000442920.1:p.Glu165Gly
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.632A>G
  hgvsp: ENSP00000356022.4:p.Glu211Gly
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.632A>G
  hgvsp: ENSP00000446252.1:p.Glu211Gly
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.515A>G
  hgvsp: ENSP00000337127.4:p.Glu172Gly
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.452A>G
  hgvsp: ENSP00000404804.2:p.Glu151Gly
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.515A>G
  hgvsp: ENSP00000356021.2:p.Glu172Gly
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.525A>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26179
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3945
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu211Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

6-160103568-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103568
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103568
    reference: chr 6
allele count: 2
allele frequency: 1.650437365901964e-5
allele num: 121180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.519A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.626A>G
  hgvsp: ENSP00000446252.1:p.Asn209Ser
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.509A>G
  hgvsp: ENSP00000337127.4:p.Asn170Ser
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.626A>G
  hgvsp: ENSP00000356022.4:p.Asn209Ser
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.506A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.446A>G
  hgvsp: ENSP00000404804.2:p.Asn149Ser
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.488A>G
  hgvsp: ENSP00000442920.1:p.Asn163Ser
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.509A>G
  hgvsp: ENSP00000356021.2:p.Asn170Ser
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*330A>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn209Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

6-160103570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103570
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103570
    reference: chr 6
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.624C>T
  hgvsp: ENST00000367055.4:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.507C>T
  hgvsp: ENST00000337404.4:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.504C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.624C>T
  hgvsp: ENST00000538183.2:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.486C>T
  hgvsp: ENST00000546087.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.507C>T
  hgvsp: ENST00000367054.2:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.444C>T
  hgvsp: ENST00000444946.2:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*328C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.517C>T
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile208Ile
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

6-160103572-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103572
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103572
    reference: chr 6
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*326A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.622A>G
  hgvsp: ENSP00000356022.4:p.Ile208Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.505A>G
  hgvsp: ENSP00000356021.2:p.Ile169Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.505A>G
  hgvsp: ENSP00000337127.4:p.Ile169Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.484A>G
  hgvsp: ENSP00000442920.1:p.Ile162Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.622A>G
  hgvsp: ENSP00000446252.1:p.Ile208Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.442A>G
  hgvsp: ENSP00000404804.2:p.Ile148Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.502A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.515A>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39892
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile208Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-160103576-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103576
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103576
    reference: chr 6
allele count: 2
allele frequency: 1.650410126916539e-5
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.438T>A
  hgvsp: ENSP00000404804.2:p.Asn146Lys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.618T>A
  hgvsp: ENSP00000356022.4:p.Asn206Lys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*322T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.480T>A
  hgvsp: ENSP00000442920.1:p.Asn160Lys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.511T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.498T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.501T>A
  hgvsp: ENSP00000356021.2:p.Asn167Lys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.501T>A
  hgvsp: ENSP00000337127.4:p.Asn167Lys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.618T>A
  hgvsp: ENSP00000446252.1:p.Asn206Lys
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn206Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

6-160103586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103586
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103586
    reference: chr 6
allele count: 1
allele frequency: 8.254639107178234e-6
allele num: 121144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.428C>T
  hgvsp: ENSP00000404804.2:p.Ala143Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.470C>T
  hgvsp: ENSP00000442920.1:p.Ala157Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.608C>T
  hgvsp: ENSP00000446252.1:p.Ala203Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.491C>T
  hgvsp: ENSP00000337127.4:p.Ala164Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.488C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.491C>T
  hgvsp: ENSP00000356021.2:p.Ala164Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.608C>T
  hgvsp: ENSP00000356022.4:p.Ala203Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.501C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*312C>T
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39543
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala203Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

6-160103610-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103610
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103610
    reference: chr 6
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.467A>C
  hgvsp: ENSP00000337127.4:p.Asn156Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.584A>C
  hgvsp: ENSP00000356022.4:p.Asn195Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.404A>C
  hgvsp: ENSP00000404804.2:p.Asn135Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.477A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.467A>C
  hgvsp: ENSP00000356021.2:p.Asn156Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.584A>C
  hgvsp: ENSP00000446252.1:p.Asn195Thr
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.464A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*288A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.446A>C
  hgvsp: ENSP00000442920.1:p.Asn149Thr
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn195Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

6-160103615-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103615
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103615
    reference: chr 6
allele count: 48
allele frequency: 3.966548772022609e-4
allele num: 121012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.441T>C
  hgvsp: ENST00000546087.1:c.441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.462T>C
  hgvsp: ENST00000367054.2:c.462T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.579T>C
  hgvsp: ENST00000367055.4:c.579T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.399T>C
  hgvsp: ENST00000444946.2:c.399T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.462T>C
  hgvsp: ENST00000337404.4:c.462T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.459T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.579T>C
  hgvsp: ENST00000538183.2:c.579T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*283T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.472T>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17982
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25937
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8027
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3967
  bin: 9.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 39283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr193Tyr
num of homozygotes: 1
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-160103618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103618
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103618
    reference: chr 6
allele count: 5
allele frequency: 4.132231404958678e-5
allele num: 121000
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.576G>A
  hgvsp: ENST00000538183.2:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.576G>A
  hgvsp: ENST00000367055.4:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.459G>A
  hgvsp: ENST00000337404.4:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*280G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.396G>A
  hgvsp: ENST00000444946.2:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.459G>A
  hgvsp: ENST00000367054.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.438G>A
  hgvsp: ENST00000546087.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.469G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.456G>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln192Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

6-160103644-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103644
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103644
    reference: chr 6
allele count: 9
allele frequency: 7.45625662778367e-5
allele num: 120704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.412G>A
  hgvsp: ENSP00000442920.1:p.Val138Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.433G>A
  hgvsp: ENSP00000337127.4:p.Val145Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.452G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.550G>A
  hgvsp: ENSP00000446252.1:p.Val184Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.370G>A
  hgvsp: ENSP00000404804.2:p.Val124Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.550G>A
  hgvsp: ENSP00000356022.4:p.Val184Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.443G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.430G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.433G>A
  hgvsp: ENSP00000356021.2:p.Val145Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*254G>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8543
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3906
  bin: 9.75e1
  variant carriers: 9
hgvs: p.Val184Met
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

6-160103648-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103648
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103648
    reference: chr 6
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*250T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.426T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.366T>A
  hgvsp: ENST00000444946.2:c.366T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.546T>A
  hgvsp: ENST00000538183.2:c.546T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.439T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.546T>A
  hgvsp: ENST00000367055.4:c.546T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.429T>A
  hgvsp: ENST00000337404.4:c.429T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.429T>A
  hgvsp: ENST00000367054.2:c.429T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.408T>A
  hgvsp: ENST00000546087.1:c.408T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.448T>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8499
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile182Ile
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

6-160103650-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103650
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103650
    reference: chr 6
allele count: 1
allele frequency: 8.290224167661493e-6
allele num: 120624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.406A>G
  hgvsp: ENSP00000442920.1:p.Ile136Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.364A>G
  hgvsp: ENSP00000404804.2:p.Ile122Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.427A>G
  hgvsp: ENSP00000337127.4:p.Ile143Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.427A>G
  hgvsp: ENSP00000356021.2:p.Ile143Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.437A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*248A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.424A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.446A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.544A>G
  hgvsp: ENSP00000356022.4:p.Ile182Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.544A>G
  hgvsp: ENSP00000446252.1:p.Ile182Val
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39320
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile182Val
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/6-160103663-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103663
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103663
    reference: chr 6
allele count: 1
allele frequency: 8.314487162431821e-6
allele num: 120272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.531T>G
  hgvsp: ENSP00000356022.4:p.Ile177Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.411T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.351T>G
  hgvsp: ENSP00000404804.2:p.Ile117Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.414T>G
  hgvsp: ENSP00000337127.4:p.Ile138Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.414T>G
  hgvsp: ENSP00000356021.2:p.Ile138Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.531T>G
  hgvsp: ENSP00000446252.1:p.Ile177Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.424T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*235T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.393T>G
  hgvsp: ENSP00000442920.1:p.Ile131Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.433T>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17883
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile177Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

6-160103669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103669
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103669
    reference: chr 6
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.345C>T
  hgvsp: ENST00000444946.2:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.408C>T
  hgvsp: ENST00000337404.4:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.525C>T
  hgvsp: ENST00000367055.4:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.418C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.427C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.408C>T
  hgvsp: ENST00000367054.2:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.405C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.525C>T
  hgvsp: ENST00000538183.2:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*229C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.387C>T
  hgvsp: ENST00000546087.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17334
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.525C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-160103693-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103693
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103693
    reference: chr 6
allele count: 3
allele frequency: 2.52746512098133e-5
allele num: 118696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.386-23T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.407-23T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.426-23T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.524-23T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-23T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.404-23T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.417-23T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*228-23T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.524-23T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.407-23T>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22007
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14179
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4481
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

6-160103712-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103712
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103712
    reference: chr 6
allele count: 1
allele frequency: 8.527184664711099e-6
allele num: 117272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.426-42C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-42C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*228-42C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.417-42C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.407-42C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.407-42C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.404-42C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.524-42C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.386-42C>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.524-42C>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15176
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-160103722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160103722
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160103722
    reference: chr 6
allele count: 1
allele frequency: 8.675886241779598e-6
allele num: 115262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.524-52A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-52A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.386-52A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.524-52A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.426-52A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.407-52A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.417-52A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.407-52A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.404-52A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*228-52A>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5988
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

6-160105836-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105836
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105836
    reference: chr 6
allele count: 1
allele frequency: 8.386166180269028e-6
allele num: 119244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.425+50A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2166A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.406+50A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.416+50A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.523+50A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.523+50A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.403+50A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.385+50A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*227+50A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.406+50A>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

6-160105843-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105843
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105843
    reference: chr 6
allele count: 1
allele frequency: 8.38208915190022e-6
allele num: 119302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*227+43A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.406+43A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.425+43A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2173A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.385+43A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.523+43A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.523+43A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.406+43A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.403+43A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.416+43A>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

6-160105849-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105849
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105849
    reference: chr 6
allele count: 2
allele frequency: 1.67372420372571e-5
allele num: 119494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2179T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.416+37T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.406+37T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.406+37T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.523+37T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.425+37T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*227+37T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.403+37T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.385+37T>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.523+37T>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3694
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

6-160105850-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105850
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105850
    reference: chr 6
allele count: 7
allele frequency: 5.857446488042442e-5
allele num: 119506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.403+36A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2180A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.406+36A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.425+36A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.523+36A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.385+36A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.416+36A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.406+36A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*227+36A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.523+36A>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

6-160105859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105859
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105859
    reference: chr 6
allele count: 1
allele frequency: 8.348360382020972e-6
allele num: 119784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.403+27T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.406+27T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.523+27T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.425+27T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*227+27T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.406+27T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.416+27T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.523+27T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.385+27T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2189T>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5702
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

6-160105871-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105871
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105870
    reference: chr 6
allele count: 2
allele frequency: 1.659475605708596e-5
allele num: 120520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.406+14delA
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.406+14delA
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.523+14delA
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.425+14delA
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.523+14delA
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.416+14delA
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*227+14delA
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.385+14delA
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.403+14delA
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2202delA
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30902
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: AT
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

6-160105899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105899
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105899
    reference: chr 6
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.510G>A
  hgvsp: ENST00000367055.4:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.390G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.403G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.393G>A
  hgvsp: ENST00000337404.4:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.510G>A
  hgvsp: ENST00000538183.2:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.372G>A
  hgvsp: ENST00000546087.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.393G>A
  hgvsp: ENST00000367054.2:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.412G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*214G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2229G>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9425
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu170Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

6-160105931-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105931
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105931
    reference: chr 6
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.340C>G
  hgvsp: ENSP00000442920.1:p.Gln114Glu
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*182C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.547C>G
  hgvsp: ENSP00000441362.1:p.Gln183Glu
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.361C>G
  hgvsp: ENSP00000356021.2:p.Gln121Glu
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.358C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.478C>G
  hgvsp: ENSP00000356022.4:p.Gln160Glu
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.547C>G
  hgvsp: ENSP00000445015.1:p.Gln183Glu
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.361C>G
  hgvsp: ENSP00000337127.4:p.Gln121Glu
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2261C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.371C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.380C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.478C>G
  hgvsp: ENSP00000446252.1:p.Gln160Glu
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln160Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

6-160105942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105942
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105942
    reference: chr 6
allele count: 4
allele frequency: 3.294784356363876e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.360G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*171G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2272G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.536G>A
  hgvsp: ENSP00000441362.1:p.Arg179Gln
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.350G>A
  hgvsp: ENSP00000356021.2:p.Arg117Gln
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.350G>A
  hgvsp: ENSP00000337127.4:p.Arg117Gln
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.329G>A
  hgvsp: ENSP00000442920.1:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.329G>A
  hgvsp: ENSP00000439191.1:p.Arg110Gln
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.467G>A
  hgvsp: ENSP00000356022.4:p.Arg156Gln
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.369G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.536G>A
  hgvsp: ENSP00000445015.1:p.Arg179Gln
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.347G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.467G>A
  hgvsp: ENSP00000446252.1:p.Arg156Gln
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg156Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

6-160105943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105943
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105943
    reference: chr 6
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.328C>T
  hgvsp: ENSP00000442920.1:p.Arg110Trp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.328C>T
  hgvsp: ENSP00000439191.1:p.Arg110Trp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.535C>T
  hgvsp: ENSP00000441362.1:p.Arg179Trp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.349C>T
  hgvsp: ENSP00000337127.4:p.Arg117Trp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.466C>T
  hgvsp: ENSP00000446252.1:p.Arg156Trp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.466C>T
  hgvsp: ENSP00000356022.4:p.Arg156Trp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2273C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.535C>T
  hgvsp: ENSP00000445015.1:p.Arg179Trp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.359C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*170C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.346C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.349C>T
  hgvsp: ENSP00000356021.2:p.Arg117Trp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.368C>T
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg156Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

6-160105944-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105944
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105944
    reference: chr 6
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.348A>G
  hgvsp: ENST00000367054.2:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.327A>G
  hgvsp: ENST00000537657.1:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.367A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.345A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.358A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.465A>G
  hgvsp: ENST00000538183.2:c.465A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.534A>G
  hgvsp: ENST00000545162.1:c.534A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*169A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.534A>G
  hgvsp: ENST00000535561.1:c.534A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.348A>G
  hgvsp: ENST00000337404.4:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.327A>G
  hgvsp: ENST00000546087.1:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2274A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.465A>G
  hgvsp: ENST00000367055.4:c.465A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu155Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

6-160105952-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105952
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105952
    reference: chr 6
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.350A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*161A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.340A>C
  hgvsp: ENSP00000356021.2:p.Asn114His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.526A>C
  hgvsp: ENSP00000441362.1:p.Asn176His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.337A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.457A>C
  hgvsp: ENSP00000446252.1:p.Asn153His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.526A>C
  hgvsp: ENSP00000445015.1:p.Asn176His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.340A>C
  hgvsp: ENSP00000337127.4:p.Asn114His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.457A>C
  hgvsp: ENSP00000356022.4:p.Asn153His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.319A>C
  hgvsp: ENSP00000442920.1:p.Asn107His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.319A>C
  hgvsp: ENSP00000439191.1:p.Asn107His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.359A>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2282A>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn153His
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

6-160105959-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105959
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105959
    reference: chr 6
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.312T>C
  hgvsp: ENST00000537657.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*154T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.519T>C
  hgvsp: ENST00000535561.1:c.519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.333T>C
  hgvsp: ENST00000367054.2:c.333T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.330T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.450T>C
  hgvsp: ENST00000367055.4:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.519T>C
  hgvsp: ENST00000545162.1:c.519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.333T>C
  hgvsp: ENST00000337404.4:c.333T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.450T>C
  hgvsp: ENST00000538183.2:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.312T>C
  hgvsp: ENST00000546087.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2289T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.343T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.352T>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu150Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/6-160105978-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105978
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105978
    reference: chr 6
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.324G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.431G>T
  hgvsp: ENSP00000356022.4:p.Gly144Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.311G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.500G>T
  hgvsp: ENSP00000441362.1:p.Gly167Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.293G>T
  hgvsp: ENSP00000439191.1:p.Gly98Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2308G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*135G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.314G>T
  hgvsp: ENSP00000337127.4:p.Gly105Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.431G>T
  hgvsp: ENSP00000446252.1:p.Gly144Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.314G>T
  hgvsp: ENSP00000356021.2:p.Gly105Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.176G>T
  hgvsp: ENSP00000384196.3:p.Gly59Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.500G>T
  hgvsp: ENSP00000445015.1:p.Gly167Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.333G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.293G>T
  hgvsp: ENSP00000442920.1:p.Gly98Val
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly144Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/6-160105985-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105985
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105985
    reference: chr 6
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.169G>T
  hgvsp: ENSP00000384196.3:p.Val57Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.317G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.326G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.307G>T
  hgvsp: ENSP00000337127.4:p.Val103Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.286G>T
  hgvsp: ENSP00000442920.1:p.Val96Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.286G>T
  hgvsp: ENSP00000439191.1:p.Val96Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.307G>T
  hgvsp: ENSP00000356021.2:p.Val103Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.424G>T
  hgvsp: ENSP00000446252.1:p.Val142Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*128G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.304G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2315G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.493G>T
  hgvsp: ENSP00000445015.1:p.Val165Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.493G>T
  hgvsp: ENSP00000441362.1:p.Val165Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.424G>T
  hgvsp: ENSP00000356022.4:p.Val142Phe
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val142Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

6-160105993-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105993
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105993
    reference: chr 6
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.161C>G
  hgvsp: ENSP00000384196.3:p.Ser54Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.485C>G
  hgvsp: ENSP00000441362.1:p.Ser162Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.299C>G
  hgvsp: ENSP00000337127.4:p.Ser100Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.416C>G
  hgvsp: ENSP00000356022.4:p.Ser139Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2323C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.278C>G
  hgvsp: ENSP00000442920.1:p.Ser93Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.416C>G
  hgvsp: ENSP00000446252.1:p.Ser139Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.485C>G
  hgvsp: ENSP00000445015.1:p.Ser162Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.299C>G
  hgvsp: ENSP00000356021.2:p.Ser100Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.309C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.296C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.278C>G
  hgvsp: ENSP00000439191.1:p.Ser93Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*120C>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.318C>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser139Cys
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

6-160105996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160105996
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160105996
    reference: chr 6
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.315C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.306C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.275C>T
  hgvsp: ENSP00000439191.1:p.Ala92Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.293C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.482C>T
  hgvsp: ENSP00000445015.1:p.Ala161Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.296C>T
  hgvsp: ENSP00000337127.4:p.Ala99Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.482C>T
  hgvsp: ENSP00000441362.1:p.Ala161Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.296C>T
  hgvsp: ENSP00000356021.2:p.Ala99Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2326C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.158C>T
  hgvsp: ENSP00000384196.3:p.Ala53Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*117C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.413C>T
  hgvsp: ENSP00000446252.1:p.Ala138Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.275C>T
  hgvsp: ENSP00000442920.1:p.Ala92Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.413C>T
  hgvsp: ENSP00000356022.4:p.Ala138Val
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala138Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

6-160106001-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106001
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106001
    reference: chr 6
allele count: 20
allele frequency: 1.647419317638919e-4
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.408G>A
  hgvsp: ENST00000538183.2:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*112G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.408G>A
  hgvsp: ENST00000367055.4:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.291G>A
  hgvsp: ENST00000337404.4:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.270G>A
  hgvsp: ENST00000537657.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.301G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.477G>A
  hgvsp: ENST00000545162.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2331G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.310G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.477G>A
  hgvsp: ENST00000535561.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.270G>A
  hgvsp: ENST00000546087.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.153G>A
  hgvsp: ENST00000401980.3:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.288G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.291G>A
  hgvsp: ENST00000367054.2:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr136Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS

6-160106002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106002
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106002
    reference: chr 6
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.290C>T
  hgvsp: ENSP00000356021.2:p.Thr97Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.269C>T
  hgvsp: ENSP00000442920.1:p.Thr90Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.476C>T
  hgvsp: ENSP00000441362.1:p.Thr159Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.152C>T
  hgvsp: ENSP00000384196.3:p.Thr51Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.269C>T
  hgvsp: ENSP00000439191.1:p.Thr90Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.290C>T
  hgvsp: ENSP00000337127.4:p.Thr97Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.309C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2332C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.407C>T
  hgvsp: ENSP00000356022.4:p.Thr136Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.476C>T
  hgvsp: ENSP00000445015.1:p.Thr159Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.407C>T
  hgvsp: ENSP00000446252.1:p.Thr136Met
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*111C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.287C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.300C>T
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr136Met
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

6-160106010-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106010
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106010
    reference: chr 6
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.301G>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.292G>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.282G>C
  hgvsp: ENSP00000337127.4:p.Glu94Asp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.468G>C
  hgvsp: ENSP00000445015.1:p.Glu156Asp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*103G>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.399G>C
  hgvsp: ENSP00000356022.4:p.Glu133Asp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.261G>C
  hgvsp: ENSP00000439191.1:p.Glu87Asp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2340G>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.468G>C
  hgvsp: ENSP00000441362.1:p.Glu156Asp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.399G>C
  hgvsp: ENSP00000446252.1:p.Glu133Asp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.261G>C
  hgvsp: ENSP00000442920.1:p.Glu87Asp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.282G>C
  hgvsp: ENSP00000356021.2:p.Glu94Asp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.144G>C
  hgvsp: ENSP00000384196.3:p.Glu48Asp
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.279G>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu133Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

6-160106025-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106025
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106025
    reference: chr 6
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.246T>C
  hgvsp: ENST00000546087.1:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.129T>C
  hgvsp: ENST00000401980.3:c.129T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.267T>C
  hgvsp: ENST00000367054.2:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.267T>C
  hgvsp: ENST00000337404.4:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.453T>C
  hgvsp: ENST00000545162.1:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2355T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.246T>C
  hgvsp: ENST00000537657.1:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.453T>C
  hgvsp: ENST00000535561.1:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*88T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.286T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.384T>C
  hgvsp: ENST00000538183.2:c.384T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.264T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.384T>C
  hgvsp: ENST00000367055.4:c.384T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.277T>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe128Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

6-160106026-A-AAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106026
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106029
    reference: chr 6
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: AAGG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*84_*86dupCCT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.273_275dupCCT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.263_265dupCCT
  hgvsp: ENSP00000337127.4:p.Ser88dup
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.282_284dupCCT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.449_451dupCCT
  hgvsp: ENSP00000441362.1:p.Ser150dup
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.125_127dupCCT
  hgvsp: ENSP00000384196.3:p.Ser42dup
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.242_244dupCCT
  hgvsp: ENSP00000439191.1:p.Ser81dup
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.263_265dupCCT
  hgvsp: ENSP00000356021.2:p.Ser88dup
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.242_244dupCCT
  hgvsp: ENSP00000442920.1:p.Ser81dup
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.380_382dupCCT
  hgvsp: ENSP00000446252.1:p.Ser127dup
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.449_451dupCCT
  hgvsp: ENSP00000445015.1:p.Ser150dup
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.260_262dupCCT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2359_344-2357dupCCT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.380_382dupCCT
  hgvsp: ENSP00000356022.4:p.Ser127dup
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser127dup
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

6-160106028-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106028
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106028
    reference: chr 6
allele count: 4
allele frequency: 3.298425002061515e-5
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*85C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.243C>T
  hgvsp: ENST00000537657.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.264C>T
  hgvsp: ENST00000337404.4:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.381C>T
  hgvsp: ENST00000367055.4:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.283C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2358C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.450C>T
  hgvsp: ENST00000535561.1:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.264C>T
  hgvsp: ENST00000367054.2:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.381C>T
  hgvsp: ENST00000538183.2:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.274C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.243C>T
  hgvsp: ENST00000546087.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.450C>T
  hgvsp: ENST00000545162.1:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.126C>T
  hgvsp: ENST00000401980.3:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.261C>T
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser127Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

6-160106038-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106038
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106038
    reference: chr 6
allele count: 6
allele frequency: 4.95507399577167e-5
allele num: 121088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.440A>T
  hgvsp: ENSP00000445015.1:p.Asp147Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.254A>T
  hgvsp: ENSP00000337127.4:p.Asp85Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.116A>T
  hgvsp: ENSP00000384196.3:p.Asp39Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2368A>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*75A>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.273A>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.233A>T
  hgvsp: ENSP00000442920.1:p.Asp78Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.264A>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.233A>T
  hgvsp: ENSP00000439191.1:p.Asp78Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.371A>T
  hgvsp: ENSP00000446252.1:p.Asp124Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.440A>T
  hgvsp: ENSP00000441362.1:p.Asp147Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.251A>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.371A>T
  hgvsp: ENSP00000356022.4:p.Asp124Val
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.254A>T
  hgvsp: ENSP00000356021.2:p.Asp85Val
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp124Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

6-160106041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106041
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106041
    reference: chr 6
allele count: 2
allele frequency: 1.652974527662529e-5
allele num: 120994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.261G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.251G>A
  hgvsp: ENSP00000356021.2:p.Arg84His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2371G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.251G>A
  hgvsp: ENSP00000337127.4:p.Arg84His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*72G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.368G>A
  hgvsp: ENSP00000356022.4:p.Arg123His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.437G>A
  hgvsp: ENSP00000445015.1:p.Arg146His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.270G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.230G>A
  hgvsp: ENSP00000439191.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.248G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.368G>A
  hgvsp: ENSP00000446252.1:p.Arg123His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.230G>A
  hgvsp: ENSP00000442920.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.437G>A
  hgvsp: ENSP00000441362.1:p.Arg146His
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.113G>A
  hgvsp: ENSP00000384196.3:p.Arg38His
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg123His
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

6-160106042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106042
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106042
    reference: chr 6
allele count: 9
allele frequency: 7.439123175348398e-5
allele num: 120982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2372C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.250C>T
  hgvsp: ENSP00000337127.4:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.436C>T
  hgvsp: ENSP00000445015.1:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.260C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.436C>T
  hgvsp: ENSP00000441362.1:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.229C>T
  hgvsp: ENSP00000439191.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.367C>T
  hgvsp: ENSP00000446252.1:p.Arg123Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.247C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.250C>T
  hgvsp: ENSP00000356021.2:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*71C>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.112C>T
  hgvsp: ENSP00000384196.3:p.Arg38Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.229C>T
  hgvsp: ENSP00000442920.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.367C>T
  hgvsp: ENSP00000356022.4:p.Arg123Cys
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.269C>T
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg123Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

6-160106043-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106043
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106043
    reference: chr 6
allele count: 2
allele frequency: 1.653630545863443e-5
allele num: 120946
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.259A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.268A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.249A>G
  hgvsp: ENST00000337404.4:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.435A>G
  hgvsp: ENST00000545162.1:c.435A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.366A>G
  hgvsp: ENST00000538183.2:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2373A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.249A>G
  hgvsp: ENST00000367054.2:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.366A>G
  hgvsp: ENST00000367055.4:c.366A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.246A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.111A>G
  hgvsp: ENST00000401980.3:c.111A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.228A>G
  hgvsp: ENST00000537657.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.435A>G
  hgvsp: ENST00000535561.1:c.435A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*70A>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.228A>G
  hgvsp: ENST00000546087.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys122Lys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

6-160106044-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106044
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106044
    reference: chr 6
allele count: 3
allele frequency: 2.480363786688714e-5
allele num: 120950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.258A>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*69A>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.365A>T
  hgvsp: ENSP00000446252.1:p.Lys122Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.227A>T
  hgvsp: ENSP00000442920.1:p.Lys76Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.227A>T
  hgvsp: ENSP00000439191.1:p.Lys76Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.434A>T
  hgvsp: ENSP00000441362.1:p.Lys145Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.245A>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.434A>T
  hgvsp: ENSP00000445015.1:p.Lys145Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.248A>T
  hgvsp: ENSP00000337127.4:p.Lys83Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.248A>T
  hgvsp: ENSP00000356021.2:p.Lys83Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.365A>T
  hgvsp: ENSP00000356022.4:p.Lys122Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.110A>T
  hgvsp: ENSP00000384196.3:p.Lys37Ile
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.267A>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2374A>T
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys122Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-160106058-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106058
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106058
    reference: chr 6
allele count: 2
allele frequency: 1.670955452327641e-5
allele num: 119692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2388G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.420G>T
  hgvsp: ENSP00000441362.1:p.Leu140Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.351G>T
  hgvsp: ENSP00000356022.4:p.Leu117Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.231G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.244G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.96G>T
  hgvsp: ENSP00000384196.3:p.Leu32Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.213G>T
  hgvsp: ENSP00000439191.1:p.Leu71Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.351G>T
  hgvsp: ENSP00000446252.1:p.Leu117Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.213G>T
  hgvsp: ENSP00000442920.1:p.Leu71Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.234G>T
  hgvsp: ENSP00000337127.4:p.Leu78Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.420G>T
  hgvsp: ENSP00000445015.1:p.Leu140Phe
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.253G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*55G>T
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.234G>T
  hgvsp: ENSP00000356021.2:p.Leu78Phe
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu117Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

6-160106061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106061
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106061
    reference: chr 6
allele count: 1
allele frequency: 8.404208827780952e-6
allele num: 118988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.250G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.231G>A
  hgvsp: ENST00000367054.2:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.228G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.348G>A
  hgvsp: ENST00000538183.2:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*52G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.417G>A
  hgvsp: ENST00000535561.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.93G>A
  hgvsp: ENST00000401980.3:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.231G>A
  hgvsp: ENST00000337404.4:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2391G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.210G>A
  hgvsp: ENST00000546087.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.241G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.210G>A
  hgvsp: ENST00000537657.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.348G>A
  hgvsp: ENST00000367055.4:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.417G>A
  hgvsp: ENST00000545162.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu116Glu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

6-160106066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106066
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106066
    reference: chr 6
allele count: 1
allele frequency: 8.486658972095866e-6
allele num: 117832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.413-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.206-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.206-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.227-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.246-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.344-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.227-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.224-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.344-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.413-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.89-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2396G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.237-1G>A
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*48-1G>A
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11098
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.344-1G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

6-160106070-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106070
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106071
    reference: chr 6
allele count: 133
allele frequency: 1.563455118258335e-3
allele num: 85068
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.227-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.89-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.246-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.237-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.344-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.206-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.227-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.224-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2401dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.413-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.344-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.413-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*48-6dupT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.206-6dupT
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11272
  bin: 3.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.344-6dupT
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

6-160106070-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106070
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106069
    reference: chr 6
allele count: 6057
allele frequency: 7.120186203977993e-2
allele num: 85068
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.344-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.206-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.89-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.344-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.413-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.237-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.413-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.224-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.246-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2401delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.227-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*48-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.227-6delT
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.206-6delT
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 9.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11272
  bin: 3.25e1
  variant carriers: 1188
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 1.75e1
  variant carriers: 1060
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 1.25e1
  variant carriers: 326
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 3.75e1
  variant carriers: 733
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7631
  bin: 2.25e1
  variant carriers: 2025
genotype depth: GenotypeDepth
  all individuals: 12547
  bin: 2.75e1
  variant carriers: 2191
genotype quality: GenotypeQuality
hgvs: c.344-6delT
num of homozygotes: 68
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: TA
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-160106075-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106075
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106075
    reference: chr 6
allele count: 3
allele frequency: 2.62582056892779e-5
allele num: 114250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.344-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.413-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.237-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.227-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2405T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.227-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.89-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.246-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*48-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.206-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.344-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.413-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.224-10T>G
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.206-10T>G
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14763
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

6-160106078-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160106078
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 160106078
    reference: chr 6
allele count: 2
allele frequency: 1.752080595707403e-5
allele num: 114150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000442920
  ensembl transcript: ENST00000546087
  gene symbol: SOD2
  hgvsc: ENST00000546087.1:c.206-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000541573
  gene symbol: SOD2
  hgvsc: ENST00000541573.1:n.237-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000441362
  ensembl transcript: ENST00000545162
  gene symbol: SOD2
  hgvsc: ENST00000545162.1:c.413-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000439191
  ensembl transcript: ENST00000537657
  gene symbol: SOD2
  hgvsc: ENST00000537657.1:c.206-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000540491
  gene symbol: SOD2
  hgvsc: ENST00000540491.1:n.246-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl transcript: ENST00000535459
  gene symbol: SOD2
  hgvsc: ENST00000535459.1:n.224-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000446252
  ensembl transcript: ENST00000538183
  gene symbol: SOD2
  hgvsc: ENST00000538183.2:c.344-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356021
  ensembl transcript: ENST00000367054
  gene symbol: SOD2
  hgvsc: ENST00000367054.2:c.227-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000404804
  ensembl transcript: ENST00000444946
  gene symbol: SOD2
  hgvsc: ENST00000444946.2:c.344-2408T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000445015
  ensembl transcript: ENST00000535561
  gene symbol: SOD2
  hgvsc: ENST00000535561.1:c.413-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000337127
  ensembl transcript: ENST00000337404
  gene symbol: SOD2
  hgvsc: ENST00000337404.4:c.227-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000440131
  ensembl transcript: ENST00000546260
  gene symbol: SOD2
  hgvsc: ENST00000546260.1:c.*48-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000356022
  ensembl transcript: ENST00000367055
  gene symbol: SOD2
  hgvsc: ENST00000367055.4:c.344-13T>C
  variant of: http://identifiers.org/hgnc/11180
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112096
  ensembl protein: ENSP00000384196
  ensembl transcript: ENST00000401980
  gene symbol: SOD2
  hgvsc: ENST00000401980.3:c.89-13T>C
  variant of: http://identifiers.org/hgnc/11180
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9076
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 3512
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2752
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 1.63265306122449e-3
allele num: 2450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.15891e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.078e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
all individuals: 343
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1932
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.114330287497214e-4
allele num: 8974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

DP
type: SiteQuality
SIO_000300: 8.05807e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.612e0

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23096
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.108647450110865e-4
allele num: 9020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

DP
type: SiteQuality
SIO_000300: 8.06389e5

VQSLOD
type: SiteQuality
SIO_000300: -1.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

QD
type: SiteQuality
SIO_000300: 1.509e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

GenotypeQuality
all individuals: 513
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3982
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 606
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30644
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 4.731e0

QD
type: SiteQuality
SIO_000300: 1.671e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.831e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

MQRankSum
type: SiteQuality
SIO_000300: -1.154e0

DP
type: SiteQuality
SIO_000300: 1.687619e6

GenotypeQuality
all individuals: 2689
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7868
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 32854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 12
allele frequency: 1.171875e-3
allele num: 10240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 1.694383e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.469e0

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

GenotypeQuality
all individuals: 2479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3951
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35245
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.748488984207447e-5
allele num: 10258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65152
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.712741e6

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.128e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8070
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3951
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.579872984855887e-5
allele num: 65504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

FS
type: SiteQuality
SIO_000300: 1.382e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.717e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.734127e6

QD
type: SiteQuality
SIO_000300: 1.288e1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3950
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 2.910925674364448e-4
allele num: 10306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -5.2e-1

DP
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SIO_000300: 1.750234e6

VQSLOD
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SIO_000300: 1.43e0

ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

BaseQRankSum
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QD
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SIO_000300: 1.162e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65914
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.339764201500536e-4
allele num: 14928
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: 5.31e-1

ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 8.22e-1

MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
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allele frequency: 6.698821007502679e-5
allele num: 14928
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65914
num of homozygotes: 0

East Asian
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 8.22e-1

BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 5.200208008320333e-4
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.75785e6

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.96e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.511944360447535e-5
allele num: 66140
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.429e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

DP
type: SiteQuality
SIO_000300: 1.760437e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66460
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Latino
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African
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allele num: 10348
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South Asian
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Other
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

European (Finnish)
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African
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East Asian
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Latino
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Other
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South Asian
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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Other
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South Asian
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.032876379958753e-4
allele num: 16486
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.05e-1

FS
type: SiteQuality
SIO_000300: 2.627e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.502e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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DP
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 16498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
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DP
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InbreedingCoeff
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FS
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 1

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.78073e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.331e0

FS
type: SiteQuality
SIO_000300: 2.75e0

QD
type: SiteQuality
SIO_000300: 2.16e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-2

MQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.780423e6

VQSLOD
type: SiteQuality
SIO_000300: 7.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

FS
type: SiteQuality
SIO_000300: 7.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.342e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 4.19e-1

MQRankSum
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SIO_000300: 2.93e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

African
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VQSLOD
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MQ
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele frequency: 2.852980454048804e-3
allele num: 16474
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African
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.50271992306074e-5
allele num: 66546
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East Asian
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European (Finnish)
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VQSLOD
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MQRankSum
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.341031429067547e-4
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.51e-1

QD
type: SiteQuality
SIO_000300: 1.467e1

DP
type: SiteQuality
SIO_000300: 1.771624e6

MQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.103e0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.475118627570264e-4
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 1.19e0

DP
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SIO_000300: 1.761086e6

VQSLOD
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SIO_000300: 2.75e0

MQRankSum
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SIO_000300: 7.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
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SIO_000300: 1.285e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
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SIO_000300: -2.61e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 5.121e0

DP
type: SiteQuality
SIO_000300: 1.759007e6

QD
type: SiteQuality
SIO_000300: 1.492e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.815e0

QD
type: SiteQuality
SIO_000300: 2.038e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

DP
type: SiteQuality
SIO_000300: 1.758e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

FS
type: SiteQuality
SIO_000300: 5.519e0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

GenotypeQuality
all individuals: 353
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66210
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 1.89e0

VQSLOD
type: SiteQuality
SIO_000300: -1.33e0

QD
type: SiteQuality
SIO_000300: 1.712e1

FS
type: SiteQuality
SIO_000300: 4.593e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.736e0

DP
type: SiteQuality
SIO_000300: 1.74477e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514233797698365e-5
allele num: 66040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

FS
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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SIO_000300: 1.217e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.952229299363058e-5
allele num: 10048
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65470
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.25517760763148e-4
allele num: 15934
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 1.355e0

BaseQRankSum
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ClippingRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.06e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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East Asian
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allele count: 0
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allele num: 8494
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South Asian
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allele count: 1
allele frequency: 6.425909266161162e-5
allele num: 15562
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9902
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
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MQ
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InbreedingCoeff
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DP
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10958
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63832
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.034554107179805e-4
allele num: 9666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

VQSLOD
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SIO_000300: -1.625e0

InbreedingCoeff
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SIO_000300: 1.1e-3

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.472e1

DP
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SIO_000300: 1.445219e6

MQ
type: SiteQuality
SIO_000300: 5.849e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
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SIO_000300: -4.81e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66060
num of homozygotes: 0

East Asian
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allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.973e0

VQSLOD
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SIO_000300: -2.71e-1

ReadPosRankSum
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FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 2.98e-1

ClippingRankSum
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SIO_000300: 1.82e0

InbreedingCoeff
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SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.177359e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66080
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

MQRankSum
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SIO_000300: 4.83e-1

VQSLOD
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SIO_000300: 2.97e0

DP
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SIO_000300: 2.180245e6

InbreedingCoeff
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SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.165e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.310444240597563e-4
allele num: 15262
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

QD
type: SiteQuality
SIO_000300: 1.444e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 2.185365e6

VQSLOD
type: SiteQuality
SIO_000300: -5.995e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.058265050040819e-4
allele num: 66146
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
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ClippingRankSum
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SIO_000300: -6.58e-1

BaseQRankSum
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SIO_000300: 4.78e0

DP
type: SiteQuality
SIO_000300: 2.186105e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.464959917248513e-5
allele num: 15468
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66214
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.761e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 6.7e-3

MQRankSum
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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VQSLOD
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SIO_000300: -6.198e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.012320390396723e-5
allele num: 66394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 2.02e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.51e-2

DP
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MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
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SIO_000300: 3.66e-1

VQSLOD
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ClippingRankSum
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SIO_000300: -2.372e0

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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East Asian
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ReadPosRankSum
type: SiteQuality
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QD
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FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Non-Finnish)
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MQRankSum
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QD
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FS
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MQ
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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East Asian
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South Asian
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FS
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DP
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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European (Finnish)
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South Asian
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FS
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MQ
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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MQRankSum
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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MQRankSum
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MQ
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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African
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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MQRankSum
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DP
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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South Asian
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African
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DP
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VQSLOD
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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African
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South Asian
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ClippingRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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African
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East Asian
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European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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African
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European (Non-Finnish)
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VQSLOD
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DP
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MQ
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FS
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VQSLOD
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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DP
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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South Asian
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Latino
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num of homozygotes: 0

European (Finnish)
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East Asian
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MQRankSum
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ClippingRankSum
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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allele frequency: 1.500195025353296e-5
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num of homozygotes: 0

African
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East Asian
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South Asian
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European (Finnish)
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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African
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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FS
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DP
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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South Asian
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Other
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East Asian
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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FS
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DP
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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African
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FS
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
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QD
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.511820970943873e-5
allele num: 66492
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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VQSLOD
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QD
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FS
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 2.420135527589545e-4
allele num: 8264
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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European (Finnish)
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QD
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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East Asian
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Other
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VQSLOD
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ClippingRankSum
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FS
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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Other
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African
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East Asian
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European (Non-Finnish)
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allele num: 46710
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European (Finnish)
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 784

GenotypeQuality
all individuals: 1294
bin: 5.25e1
variant carriers: 321

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 70

GenotypeQuality
all individuals: 4421
bin: 2.75e1
variant carriers: 570

GenotypeQuality
all individuals: 1008
bin: 7.75e1
variant carriers: 138

GenotypeQuality
all individuals: 2779
bin: 1.25e1
variant carriers: 613

GenotypeQuality
all individuals: 2244
bin: 4.25e1
variant carriers: 444

GenotypeQuality
all individuals: 3155
bin: 6.75e1
variant carriers: 172

GenotypeQuality
all individuals: 8287
bin: 2.5e0
variant carriers: 432

GenotypeQuality
all individuals: 3097
bin: 3.75e1
variant carriers: 565

GenotypeQuality
all individuals: 1219
bin: 7.25e1
variant carriers: 172

GenotypeQuality
all individuals: 1853
bin: 4.75e1
variant carriers: 382

GenotypeQuality
all individuals: 979
bin: 5.75e1
variant carriers: 291

GenotypeQuality
all individuals: 7643
bin: 2.25e1
variant carriers: 715

GenotypeQuality
all individuals: 8072
bin: 6.25e1
variant carriers: 239

GenotypeQuality
all individuals: 412
bin: 8.75e1
variant carriers: 69

GenotypeQuality
all individuals: 654
bin: 8.25e1
variant carriers: 119

Latino
type: Population
allele count: 602
allele frequency: 7.599091138601363e-2
allele num: 7922
num of homozygotes: 0

South Asian
type: Population
allele count: 720
allele frequency: 6.564551422319474e-2
allele num: 10968
num of homozygotes: 0

African
type: Population
allele count: 1319
allele frequency: 1.65495608531995e-1
allele num: 7970
num of homozygotes: 68

East Asian
type: Population
allele count: 367
allele frequency: 6.477232615601836e-2
allele num: 5666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 210
allele frequency: 4.074505238649592e-2
allele num: 5154
num of homozygotes: 0

Other
type: Population
allele count: 42
allele frequency: 6.194690265486726e-2
allele num: 678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2797
allele frequency: 5.988011132519803e-2
allele num: 46710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

FS
type: SiteQuality
SIO_000300: 1.641e0

DP
type: SiteQuality
SIO_000300: 1.844768e6

QD
type: SiteQuality
SIO_000300: 2.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeDepth
all individuals: 3243
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 510
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3480
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3318
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1642
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8399
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6181
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.786062984588877e-5
allele num: 62682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16078
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

DP
type: SiteQuality
SIO_000300: 1.591396e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.594e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.59e-1

FS
type: SiteQuality
SIO_000300: 3.284e0

GenotypeDepth
all individuals: 8535
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1518
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14693
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 886
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3507
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8442
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3954
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 7.5e0
variant carriers: 0