5-82841420-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841420
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841420
    reference: chr 5
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11428G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3924C>G
  hgvsp: ENST00000512590.2:c.3924C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4068C>G
  hgvsp: ENST00000342785.4:c.4068C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9330C>G
  hgvsp: ENST00000265077.3:c.9330C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1107C>G
  hgvsp: ENST00000502527.2:c.1107C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6720C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.492C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6369C>G
  hgvsp: ENST00000343200.5:c.6369C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3900G>C
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13940
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser3110Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

5-82841422-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841422
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841422
    reference: chr 5
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4070A>G
  hgvsp: ENSP00000342768.4:p.Tyr1357Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.494A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3926A>G
  hgvsp: ENSP00000425959.2:p.Tyr1309Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6371A>G
  hgvsp: ENSP00000340062.5:p.Tyr2124Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11430T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3902T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6722A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1109A>G
  hgvsp: ENSP00000421362.2:p.Tyr370Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9332A>G
  hgvsp: ENSP00000265077.3:p.Tyr3111Cys
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44067
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr3111Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

5-82841423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841423
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841423
    reference: chr 5
allele count: 6
allele frequency: 4.942583653228331e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1110C>T
  hgvsp: ENST00000502527.2:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6723C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11431G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4071C>T
  hgvsp: ENST00000342785.4:c.4071C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3927C>T
  hgvsp: ENST00000512590.2:c.3927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9333C>T
  hgvsp: ENST00000265077.3:c.9333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3903G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6372C>T
  hgvsp: ENST00000343200.5:c.6372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.495C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr3111Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-82841424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841424
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841424
    reference: chr 5
allele count: 5
allele frequency: 4.118819711023609e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3928G>A
  hgvsp: ENSP00000425959.2:p.Val1310Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6724G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6373G>A
  hgvsp: ENSP00000340062.5:p.Val2125Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3904C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.496G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9334G>A
  hgvsp: ENSP00000265077.3:p.Val3112Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4072G>A
  hgvsp: ENSP00000342768.4:p.Val1358Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1111G>A
  hgvsp: ENSP00000421362.2:p.Val371Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11432C>T
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13935
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44066
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val3112Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

5-82841431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841431
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841431
    reference: chr 5
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11439G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.503C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1118C>T
  hgvsp: ENSP00000421362.2:p.Thr373Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9341C>T
  hgvsp: ENSP00000265077.3:p.Thr3114Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4079C>T
  hgvsp: ENSP00000342768.4:p.Thr1360Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3911G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3935C>T
  hgvsp: ENSP00000425959.2:p.Thr1312Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6731C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6380C>T
  hgvsp: ENSP00000340062.5:p.Thr2127Ile
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr3114Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

5-82841437-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841437
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841437
    reference: chr 5
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3941T>A
  hgvsp: ENSP00000425959.2:p.Val1314Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4085T>A
  hgvsp: ENSP00000342768.4:p.Val1362Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1124T>A
  hgvsp: ENSP00000421362.2:p.Val375Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.509T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6737T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3917A>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6386T>A
  hgvsp: ENSP00000340062.5:p.Val2129Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9347T>A
  hgvsp: ENSP00000265077.3:p.Val3116Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11445A>T
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val3116Glu
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

5-82841445-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841445
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841445
    reference: chr 5
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3925A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1132T>C
  hgvsp: ENSP00000421362.2:p.Tyr378His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9355T>C
  hgvsp: ENSP00000265077.3:p.Tyr3119His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.517T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3949T>C
  hgvsp: ENSP00000425959.2:p.Tyr1317His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4093T>C
  hgvsp: ENSP00000342768.4:p.Tyr1365His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11453A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6394T>C
  hgvsp: ENSP00000340062.5:p.Tyr2132His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6745T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13931
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr3119His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

5-82841450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841450
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841450
    reference: chr 5
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1137C>T
  hgvsp: ENST00000502527.2:c.1137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6750C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11458G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4098C>T
  hgvsp: ENST00000342785.4:c.4098C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9360C>T
  hgvsp: ENST00000265077.3:c.9360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6399C>T
  hgvsp: ENST00000343200.5:c.6399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3930G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3954C>T
  hgvsp: ENST00000512590.2:c.3954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.522C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13930
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44064
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser3120Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

5-82841454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841454
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841454
    reference: chr 5
allele count: 3
allele frequency: 2.471902705909495e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3934C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6403G>A
  hgvsp: ENSP00000340062.5:p.Asp2135Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.526G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4102G>A
  hgvsp: ENSP00000342768.4:p.Asp1368Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3958G>A
  hgvsp: ENSP00000425959.2:p.Asp1320Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11462C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6754G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9364G>A
  hgvsp: ENSP00000265077.3:p.Asp3122Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1141G>A
  hgvsp: ENSP00000421362.2:p.Asp381Asn
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13930
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44062
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp3122Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

5-82841456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841456
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841456
    reference: chr 5
allele count: 22
allele frequency: 1.812788398154252e-4
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3936G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4104C>T
  hgvsp: ENST00000342785.4:c.4104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9366C>T
  hgvsp: ENST00000265077.3:c.9366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.528C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3960C>T
  hgvsp: ENST00000512590.2:c.3960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11464G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6756C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1143C>T
  hgvsp: ENST00000502527.2:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6405C>T
  hgvsp: ENST00000343200.5:c.6405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13930
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44060
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp3122Asp
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

5-82841459-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841459
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841459
    reference: chr 5
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.531G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1146G>T
  hgvsp: ENSP00000421362.2:p.Gln382His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4107G>T
  hgvsp: ENSP00000342768.4:p.Gln1369His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3939C>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9369G>T
  hgvsp: ENSP00000265077.3:p.Gln3123His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11467C>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6408G>T
  hgvsp: ENSP00000340062.5:p.Gln2136His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3963G>T
  hgvsp: ENSP00000425959.2:p.Gln1321His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6759G>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13925
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln3123His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

5-82841466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841466
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841466
    reference: chr 5
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6415C>T
  hgvsp: ENSP00000340062.5:p.Leu2139Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3970C>T
  hgvsp: ENSP00000425959.2:p.Leu1324Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.538C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1153C>T
  hgvsp: ENSP00000421362.2:p.Leu385Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6766C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4114C>T
  hgvsp: ENSP00000342768.4:p.Leu1372Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11474G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3946G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9376C>T
  hgvsp: ENSP00000265077.3:p.Leu3126Phe
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13924
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu3126Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

5-82841475-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841475
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841475
    reference: chr 5
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1156+6A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4117+6A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9379+6A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6418+6A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3973+6A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6769+6A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.541+6A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3955T>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11483T>A
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13923
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: c.9379+6A>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

5-82841476-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841476
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841476
    reference: chr 5
allele count: 17237
allele frequency: 1.420951972697146e-1
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6418+7T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9379+7T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11484A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.541+7T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4117+7T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6769+7T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1156+7T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3956A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3973+7T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 4.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 7.25e1
  variant carriers: 489
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 5.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 6.25e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 14385
  bin: 9.75e1
  variant carriers: 10953
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 4.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 6.75e1
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 7.75e1
  variant carriers: 601
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 8.25e1
  variant carriers: 710
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 9.25e1
  variant carriers: 876
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 8.75e1
  variant carriers: 803
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 3.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 5.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4645
  bin: 6.25e1
  variant carriers: 0
hgvs: c.9379+7T>C
num of homozygotes: 1688
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-82841489-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841489
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841489
    reference: chr 5
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6418+20A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3969T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9379+20A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.541+20A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1156+20A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11497T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4117+20A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3973+20A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6769+20A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

5-82841494-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841494
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841494
    reference: chr 5
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11502C>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6769+25G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3973+25G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4117+25G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1156+25G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.541+25G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3974C>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9379+25G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6418+25G>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5942
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

5-82841499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841499
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841499
    reference: chr 5
allele count: 3
allele frequency: 2.47639173215347e-5
allele num: 121144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6769+30G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11507C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3973+30G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.541+30G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9379+30G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6418+30G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1156+30G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4117+30G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3979C>T
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

5-82841514-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841514
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841514
    reference: chr 5
allele count: 4
allele frequency: 3.307479865716317e-5
allele num: 120938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3973+45A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9379+45A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3994T>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4117+45A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6769+45A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11522T>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6418+45A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.541+45A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1156+45A>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2765
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39168
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

5-82841517-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841517
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841517
    reference: chr 5
allele count: 1
allele frequency: 8.273625337150233e-6
allele num: 120866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3973+48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1156+48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6418+48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.541+48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11525A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6769+48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9379+48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3997A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4117+48T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

5-82841518-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82841518
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82841518
    reference: chr 5
allele count: 1
allele frequency: 8.277323444690924e-6
allele num: 120812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4117+49A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6418+49A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3973+49A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9379+49A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-3998T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6769+49A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.541+49A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1156+49A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-11526T>C
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

5-82843742-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843742
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843742
    reference: chr 5
allele count: 1
allele frequency: 8.461955050094773e-6
allele num: 118176
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6222A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6419-48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13750A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.542-48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6770-48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4118-48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1157-48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9380-48T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3974-48T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16836
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-82843743-TGATACTTTTTGAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843743
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843729
    reference: chr 5
allele count: 1
allele frequency: 8.458948721852847e-6
allele num: 118218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11501
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: TGATACTTTTTGAAA
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

5-82843755-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843755
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843755
    reference: chr 5
allele count: 1
allele frequency: 8.423038695439767e-6
allele num: 118722
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9380-35A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1157-35A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6419-35A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.542-35A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6770-35A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4118-35A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13763T>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3974-35A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6235T>A
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

5-82843759-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843759
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843759
    reference: chr 5
allele count: 334
allele frequency: 2.804130635546973e-3
allele num: 119110
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6239A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.542-31T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1157-31T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4118-31T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9380-31T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3974-31T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6419-31T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6770-31T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13767A>G
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 3.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22224
  bin: 2.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 13745
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11538
  bin: 9.75e1
  variant carriers: 328
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 3
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

5-82843770-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843770
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843770
    reference: chr 5
allele count: 1
allele frequency: 8.30923654734603e-6
allele num: 120348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.542-20C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6250G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4118-20C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6770-20C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6419-20C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3974-20C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13778G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1157-20C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9380-20C>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-82843774-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843774
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843774
    reference: chr 5
allele count: 1
allele frequency: 8.288575028181154e-6
allele num: 120648
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9380-16T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3974-16T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1157-16T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4118-16T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6770-16T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6254A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6419-16T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.542-16T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13782A>G
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-82843778-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843778
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843778
    reference: chr 5
allele count: 5
allele frequency: 4.139004321120511e-5
allele num: 120802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4118-12A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9380-12A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6258T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6770-12A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13786T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3974-12A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1157-12A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.542-12A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6419-12A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24508
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

5-82843783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843783
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843783
    reference: chr 5
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4118-7G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9380-7G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.542-7G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6770-7G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6263C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6419-7G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13791C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3974-7G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1157-7G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11247
  bin: 9.75e1
  variant carriers: 1
hgvs: c.9380-7G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

5-82843786-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843786
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843786
    reference: chr 5
allele count: 14
allele frequency: 1.156814463485978e-4
allele num: 121022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.542-4T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1157-4T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9380-4T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4118-4T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13794A>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3974-4T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6266A>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6419-4T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6770-4T>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: c.9380-4T>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

5-82843815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843815
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843815
    reference: chr 5
allele count: 2
allele frequency: 1.649266900862567e-5
allele num: 121266
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9405C>T
  hgvsp: ENST00000265077.3:c.9405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6295G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13823G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.3999C>T
  hgvsp: ENST00000512590.2:c.3999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.567C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4143C>T
  hgvsp: ENST00000342785.4:c.4143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6444C>T
  hgvsp: ENST00000343200.5:c.6444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1182C>T
  hgvsp: ENST00000502527.2:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6795C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro3135Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

5-82843820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843820
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843820
    reference: chr 5
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9410G>A
  hgvsp: ENSP00000265077.3:p.Arg3137His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4148G>A
  hgvsp: ENSP00000342768.4:p.Arg1383His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6800G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6449G>A
  hgvsp: ENSP00000340062.5:p.Arg2150His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6300C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13828C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4004G>A
  hgvsp: ENSP00000425959.2:p.Arg1335His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1187G>A
  hgvsp: ENSP00000421362.2:p.Arg396His
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.572G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg3137His
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

5-82843843-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843843
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843843
    reference: chr 5
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9433G>A
  hgvsp: ENSP00000265077.3:p.Gly3145Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4171G>A
  hgvsp: ENSP00000342768.4:p.Gly1391Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6823G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.595G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4027G>A
  hgvsp: ENSP00000425959.2:p.Gly1343Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1210G>A
  hgvsp: ENSP00000421362.2:p.Gly404Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6472G>A
  hgvsp: ENSP00000340062.5:p.Gly2158Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6323C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13851C>T
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly3145Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/5-82843858-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843858
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843858
    reference: chr 5
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4186A>C
  hgvsp: ENST00000342785.4:c.4186A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.610A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6487A>C
  hgvsp: ENST00000343200.5:c.6487A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1225A>C
  hgvsp: ENST00000502527.2:c.1225A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6338T>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6838A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13866T>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9448A>C
  hgvsp: ENST00000265077.3:c.9448A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4042A>C
  hgvsp: ENST00000512590.2:c.4042A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6806
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg3150Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

5-82843858-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843858
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843858
    reference: chr 5
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4042A>G
  hgvsp: ENSP00000425959.2:p.Arg1348Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1225A>G
  hgvsp: ENSP00000421362.2:p.Arg409Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6838A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9448A>G
  hgvsp: ENSP00000265077.3:p.Arg3150Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4186A>G
  hgvsp: ENSP00000342768.4:p.Arg1396Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6487A>G
  hgvsp: ENSP00000340062.5:p.Arg2163Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.610A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6338T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13866T>C
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg3150Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

5-82843859-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843859
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843859
    reference: chr 5
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4043G>C
  hgvsp: ENSP00000425959.2:p.Arg1348Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6488G>C
  hgvsp: ENSP00000340062.5:p.Arg2163Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6839G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1226G>C
  hgvsp: ENSP00000421362.2:p.Arg409Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4187G>C
  hgvsp: ENSP00000342768.4:p.Arg1396Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6339C>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9449G>C
  hgvsp: ENSP00000265077.3:p.Arg3150Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13867C>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.611G>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg3150Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

5-82843860-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843860
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843860
    reference: chr 5
allele count: 3
allele frequency: 2.473573984597879e-5
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6340C>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9450G>C
  hgvsp: ENSP00000265077.3:p.Arg3150Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6489G>C
  hgvsp: ENSP00000340062.5:p.Arg2163Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.612G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4044G>C
  hgvsp: ENSP00000425959.2:p.Arg1348Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1227G>C
  hgvsp: ENSP00000421362.2:p.Arg409Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6840G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4188G>C
  hgvsp: ENSP00000342768.4:p.Arg1396Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13868C>G
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg3150Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

5-82843864-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843864
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843864
    reference: chr 5
allele count: 32
allele frequency: 2.638391900136867e-4
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6493C>G
  hgvsp: ENSP00000340062.5:p.Leu2165Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.616C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6844C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4192C>G
  hgvsp: ENSP00000342768.4:p.Leu1398Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1231C>G
  hgvsp: ENSP00000421362.2:p.Leu411Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4048C>G
  hgvsp: ENSP00000425959.2:p.Leu1350Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13872G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6344G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9454C>G
  hgvsp: ENSP00000265077.3:p.Leu3152Val
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu3152Val
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

5-82843864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843864
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843864
    reference: chr 5
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6844C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4192C>T
  hgvsp: ENSP00000342768.4:p.Leu1398Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4048C>T
  hgvsp: ENSP00000425959.2:p.Leu1350Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6493C>T
  hgvsp: ENSP00000340062.5:p.Leu2165Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9454C>T
  hgvsp: ENSP00000265077.3:p.Leu3152Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6344G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.616C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13872G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1231C>T
  hgvsp: ENSP00000421362.2:p.Leu411Phe
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu3152Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

5-82843891-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843891
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843891
    reference: chr 5
allele count: 2
allele frequency: 1.649974425396406e-5
allele num: 121214
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6371G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4219C>G
  hgvsp: ENSP00000342768.4:p.Leu1407Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4075C>G
  hgvsp: ENSP00000425959.2:p.Leu1359Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9481C>G
  hgvsp: ENSP00000265077.3:p.Leu3161Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6871C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1258C>G
  hgvsp: ENSP00000421362.2:p.Leu420Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.643C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13899G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6520C>G
  hgvsp: ENSP00000340062.5:p.Leu2174Val
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu3161Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

5-82843908-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843908
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843908
    reference: chr 5
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1270+5G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4087+5G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4231+5G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9493+5G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.655+5G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6532+5G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6883+5G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6388C>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.285-13916C>A
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15202
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6775
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.9493+5G>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

5-82843926-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843926
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843926
    reference: chr 5
allele count: 3
allele frequency: 2.487685954525101e-5
allele num: 120594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6883+23T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+13924A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6532+23T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4087+23T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.655+23T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9493+23T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4231+23T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6406A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1270+23T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11244
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

5-82843943-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843943
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843944
    reference: chr 5
allele count: 3276
allele frequency: 2.919265728034218e-2
allele num: 112220
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6883+49dupT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4087+49dupT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1270+49dupT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.655+49dupT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6424dupA
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9493+49dupT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4231+49dupT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6532+49dupT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+13906dupA
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 4.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 6.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 8.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 1.25e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11924
  bin: 2.75e1
  variant carriers: 465
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 1.75e1
  variant carriers: 581
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 3.25e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 2.25e1
  variant carriers: 649
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.75e1
  variant carriers: 150
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 5.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2765
  bin: 2.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 4.75e1
  variant carriers: 17
num of homozygotes: 90
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

5-82843943-A-ATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843943
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843945
    reference: chr 5
allele count: 26
allele frequency: 2.316877561931919e-4
allele num: 112220
alternate allele: ATT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6425_229-6424dupAA
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6883+48_6883+49dupTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9493+48_9493+49dupTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1270+48_1270+49dupTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4231+48_4231+49dupTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4087+48_4087+49dupTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+13905_284+13906dupAA
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.655+48_655+49dupTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6532+48_6532+49dupTT
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11924
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3904
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

5-82843943-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843943
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843942
    reference: chr 5
allele count: 147
allele frequency: 1.309926929246124e-3
allele num: 112220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+13906delA
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1270+49delT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6532+49delT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.655+49delT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4231+49delT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4087+49delT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9493+49delT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6883+49delT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6424delA
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 2.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 11924
  bin: 2.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3985
  bin: 2.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 3.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 19
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: AT
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

5-82843952-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82843952
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82843952
    reference: chr 5
allele count: 1
allele frequency: 8.460093737838614e-6
allele num: 118202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4231+49T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4087+49T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6883+49T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1270+49T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+13898A>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.655+49T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9493+49T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6532+49T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-6432A>T
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4871
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

5-82849143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849143
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849143
    reference: chr 5
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-40C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-40C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11623G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-40C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-40C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8707G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-40C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-40C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-40C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

5-82849144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849144
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849144
    reference: chr 5
allele count: 10
allele frequency: 8.281024859636629e-5
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-39G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-39G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8706C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-39G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-39G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-39G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-39G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11624C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-39G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9465
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8094
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4694
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

5-82849144-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849144
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849144
    reference: chr 5
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8706C>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-39G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-39G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-39G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-39G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-39G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-39G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-39G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11624C>A
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9465
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

5-82849145-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849145
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849145
    reference: chr 5
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-38T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11625A>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-38T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-38T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-38T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8705A>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-38T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-38T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-38T>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17099
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

5-82849150-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849150
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849150
    reference: chr 5
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-33G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-33G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-33G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11630C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8700C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-33G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-33G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-33G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-33G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

5-82849152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849152
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849152
    reference: chr 5
allele count: 20
allele frequency: 1.655108492361674e-4
allele num: 120838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-31G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-31G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-31G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-31G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8698C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-31G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-31G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-31G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11632C>T
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16397
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

5-82849161-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849161
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849161
    reference: chr 5
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-22G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-22G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-22G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8689C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-22G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11641C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-22G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-22G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-22G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4732
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

5-82849168-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849168
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849168
    reference: chr 5
allele count: 2
allele frequency: 1.652319029758266e-5
allele num: 121042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-15C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8682G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-15C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-15C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-15C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11648G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-15C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-15C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-15C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

5-82849170-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849170
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849170
    reference: chr 5
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-13T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-13T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-13T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11650A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-13T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-13T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-13T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-13T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8680A>G
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5855
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

5-82849171-GTTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849171
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849167
    reference: chr 5
allele count: 3
allele frequency: 2.477455158061639e-5
allele num: 121092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-9_6884-6delTCTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-9_4088-6delTCTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-9_4232-6delTCTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-9_9494-6delTCTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8675_284+8678delGAAA
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-9_1271-6delTCTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-9_656-6delTCTT
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11655_229-11652delGAAA
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-9_6533-6delTCTT
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: c.9494-9_9494-6delTCTT
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: GTTTC
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

5-82849175-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849175
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849175
    reference: chr 5
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-8C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-8C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11655G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-8C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-8C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8675G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-8C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-8C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-8C>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
hgvs: c.9494-8C>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

5-82849178-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849178
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849178
    reference: chr 5
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11658G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6884-5C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.656-5C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4088-5C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9494-5C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6533-5C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4232-5C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1271-5C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8672G>A
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18082
  bin: 6.25e1
  variant carriers: 0
hgvs: c.9494-5C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

5-82849184-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849184
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849184
    reference: chr 5
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8666A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4233T>C
  hgvsp: ENST00000342785.4:c.4233T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1272T>C
  hgvsp: ENST00000502527.2:c.1272T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4089T>C
  hgvsp: ENST00000512590.2:c.4089T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6885T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.657T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6534T>C
  hgvsp: ENST00000343200.5:c.6534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.4T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9495T>C
  hgvsp: ENST00000265077.3:c.9495T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11664A>G
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18101
  bin: 6.25e1
  variant carriers: 0
hgvs: c.9495T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

5-82849187-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849187
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849187
    reference: chr 5
allele count: 4
allele frequency: 3.299785513941594e-5
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6537C>T
  hgvsp: ENST00000343200.5:c.6537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.7C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4236C>T
  hgvsp: ENST00000342785.4:c.4236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4092C>T
  hgvsp: ENST00000512590.2:c.4092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.660C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11667G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6888C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9498C>T
  hgvsp: ENST00000265077.3:c.9498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8663G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1275C>T
  hgvsp: ENST00000502527.2:c.1275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr3166Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

5-82849188-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849188
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849188
    reference: chr 5
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1276G>A
  hgvsp: ENSP00000421362.2:p.Glu426Lys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4093G>A
  hgvsp: ENSP00000425959.2:p.Glu1365Lys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.8G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8662C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.661G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4237G>A
  hgvsp: ENSP00000342768.4:p.Glu1413Lys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6889G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9499G>A
  hgvsp: ENSP00000265077.3:p.Glu3167Lys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11668C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6538G>A
  hgvsp: ENSP00000340062.5:p.Glu2180Lys
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8478
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu3167Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-82849191-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849191
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849191
    reference: chr 5
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9502A>G
  hgvsp: ENSP00000265077.3:p.Thr3168Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11671T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6541A>G
  hgvsp: ENSP00000340062.5:p.Thr2181Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4096A>G
  hgvsp: ENSP00000425959.2:p.Thr1366Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6892A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8659T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4240A>G
  hgvsp: ENSP00000342768.4:p.Thr1414Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.11A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1279A>G
  hgvsp: ENSP00000421362.2:p.Thr427Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.664A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13443
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr3168Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

5-82849204-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849204
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849204
    reference: chr 5
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1292G>C
  hgvsp: ENSP00000421362.2:p.Gly431Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11684C>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8646C>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.677G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4253G>C
  hgvsp: ENSP00000342768.4:p.Gly1418Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4109G>C
  hgvsp: ENSP00000425959.2:p.Gly1370Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6905G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.24G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6554G>C
  hgvsp: ENSP00000340062.5:p.Gly2185Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9515G>C
  hgvsp: ENSP00000265077.3:p.Gly3172Ala
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16682
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly3172Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-82849209-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849209
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849209
    reference: chr 5
allele count: 5
allele frequency: 4.133256179217988e-5
allele num: 120970
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6910C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.682C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8641G>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4114C>G
  hgvsp: ENSP00000425959.2:p.His1372Asp
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1297C>G
  hgvsp: ENSP00000421362.2:p.His433Asp
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.29C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4258C>G
  hgvsp: ENSP00000342768.4:p.His1420Asp
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9520C>G
  hgvsp: ENSP00000265077.3:p.His3174Asp
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6559C>G
  hgvsp: ENSP00000340062.5:p.His2187Asp
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11689G>C
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 1
hgvs: p.His3174Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

5-82849223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849223
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849223
    reference: chr 5
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8627C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4128G>A
  hgvsp: ENST00000512590.2:c.4128G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.696G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4272G>A
  hgvsp: ENST00000342785.4:c.4272G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11703C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9534G>A
  hgvsp: ENST00000265077.3:c.9534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6924G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1311G>A
  hgvsp: ENST00000502527.2:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.43G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6573G>A
  hgvsp: ENST00000343200.5:c.6573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5858
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly3178Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

5-82849230-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849230
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849230
    reference: chr 5
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9541T>A
  hgvsp: ENSP00000265077.3:p.Tyr3181Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6580T>A
  hgvsp: ENSP00000340062.5:p.Tyr2194Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4279T>A
  hgvsp: ENSP00000342768.4:p.Tyr1427Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.703T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6931T>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1318T>A
  hgvsp: ENSP00000421362.2:p.Tyr440Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4135T>A
  hgvsp: ENSP00000425959.2:p.Tyr1379Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8620A>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11710A>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.50T>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr3181Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-82849235-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849235
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849235
    reference: chr 5
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6585A>T
  hgvsp: ENSP00000340062.5:p.Lys2195Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9546A>T
  hgvsp: ENSP00000265077.3:p.Lys3182Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1323A>T
  hgvsp: ENSP00000421362.2:p.Lys441Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.708A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4140A>T
  hgvsp: ENSP00000425959.2:p.Lys1380Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.55A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6936A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4284A>T
  hgvsp: ENSP00000342768.4:p.Lys1428Asn
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11715T>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8615T>A
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys3182Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

5-82849241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849241
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849241
    reference: chr 5
allele count: 6
allele frequency: 4.945027774572667e-5
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6591T>C
  hgvsp: ENST00000343200.5:c.6591T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4146T>C
  hgvsp: ENST00000512590.2:c.4146T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9552T>C
  hgvsp: ENST00000265077.3:c.9552T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.61T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11721A>G
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6942T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.714T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4290T>C
  hgvsp: ENST00000342785.4:c.4290T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1329T>C
  hgvsp: ENST00000502527.2:c.1329T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8609A>G
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe3184Phe
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

5-82849244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849244
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849244
    reference: chr 5
allele count: 3
allele frequency: 2.472473132458627e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9555C>T
  hgvsp: ENST00000265077.3:c.9555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4149C>T
  hgvsp: ENST00000512590.2:c.4149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11724G>A
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6945C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4293C>T
  hgvsp: ENST00000342785.4:c.4293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1332C>T
  hgvsp: ENST00000502527.2:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.64C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6594C>T
  hgvsp: ENST00000343200.5:c.6594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.717C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8606G>A
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13818
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4726
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala3185Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

5-82849246-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849246
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849246
    reference: chr 5
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4151A>G
  hgvsp: ENSP00000425959.2:p.His1384Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6947A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11726T>C
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4295A>G
  hgvsp: ENSP00000342768.4:p.His1432Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6596A>G
  hgvsp: ENSP00000340062.5:p.His2199Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.66A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1334A>G
  hgvsp: ENSP00000421362.2:p.His445Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.719A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9557A>G
  hgvsp: ENSP00000265077.3:p.His3186Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8604T>C
  variant of: http://identifiers.org/hgnc/40163
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13489
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His3186Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

5-82849249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82849249
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82849249
    reference: chr 5
allele count: 22
allele frequency: 1.813057309093307e-4
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000513016
  gene symbol: VCAN
  hgvsc: ENST00000513016.1:n.6950G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.9560G>A
  hgvsp: ENSP00000265077.3:p.Arg3187Gln
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.4154G>A
  hgvsp: ENSP00000425959.2:p.Arg1385Gln
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000512090
  gene symbol: VCAN-AS1
  hgvsc: ENST00000512090.1:n.284+8601C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000249835
  ensembl transcript: ENST00000513899
  gene symbol: VCAN-AS1
  hgvsc: ENST00000513899.1:n.229-11729C>T
  variant of: http://identifiers.org/hgnc/40163
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.4298G>A
  hgvsp: ENSP00000342768.4:p.Arg1433Gln
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000507162
  gene symbol: VCAN
  hgvsc: ENST00000507162.1:n.722G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000505615
  gene symbol: VCAN
  hgvsc: ENST00000505615.1:n.69G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.6599G>A
  hgvsp: ENSP00000340062.5:p.Arg2200Gln
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1337G>A
  hgvsp: ENSP00000421362.2:p.Arg446Gln
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16729
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg3187Gln
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 44068
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.81e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

FS
type: SiteQuality
SIO_000300: 1.469e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.517e0

DP
type: SiteQuality
SIO_000300: 4.138792e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 4.13868e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

GenotypeQuality
all individuals: 44067
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49243264303054e-5
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.138971e6

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4766
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.826e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.993e1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 4.138454e6

QD
type: SiteQuality
SIO_000300: 1.365e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

GenotypeQuality
all individuals: 44064
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4763
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

FS
type: SiteQuality
SIO_000300: 2.174e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.261e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

DP
type: SiteQuality
SIO_000300: 4.13796e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.186e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44064
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4759
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.168e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.13e0

FS
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

DP
type: SiteQuality
SIO_000300: 4.137792e6

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.38e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44064
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2403
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-2

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.02e0

FS
type: SiteQuality
SIO_000300: 8.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

DP
type: SiteQuality
SIO_000300: 4.137689e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.137426e6

FS
type: SiteQuality
SIO_000300: 3.111e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 2.906e1

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

InbreedingCoeff
type: SiteQuality
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DP
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.795e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 22
allele frequency: 1.332364341085271e-3
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.491e0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

DP
type: SiteQuality
SIO_000300: 4.13734e6

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.241e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.305e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.208e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.267e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-2

QD
type: SiteQuality
SIO_000300: 1.595e1

MQ
type: SiteQuality
SIO_000300: 5.882e1

VQSLOD
type: SiteQuality
SIO_000300: -1.289e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 4.136808e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.193e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
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allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
type: Population
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FS
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 906
allele frequency: 1.370235934664247e-1
allele num: 6612
num of homozygotes: 77

East Asian
type: Population
allele count: 1950
allele frequency: 2.267969295184927e-1
allele num: 8598
num of homozygotes: 207

European (Non-Finnish)
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allele count: 7748
allele frequency: 1.161340607950117e-1
allele num: 66716
num of homozygotes: 466

South Asian
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allele frequency: 3.197068798449613e-1
allele num: 16512
num of homozygotes: 883

Latino
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allele frequency: 5.771893388715819e-2
allele num: 11556
num of homozygotes: 33

African
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allele count: 543
allele frequency: 5.218143378819912e-2
allele num: 10406
num of homozygotes: 12

Other
type: Population
allele count: 144
allele frequency: 1.589403973509934e-1
allele num: 906
num of homozygotes: 10

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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FS
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ClippingRankSum
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QD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 31
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

QD
type: SiteQuality
SIO_000300: 9.65e0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39172
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

QD
type: SiteQuality
SIO_000300: 1.56e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.408e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.269833e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 2663
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14
bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39170
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.501665616278023e-5
allele num: 66642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 3.26475e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 2.702e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.878e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.032e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 3.166e0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 409
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GenotypeQuality
all individuals: 3781
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.475842891901286e-4
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

VQSLOD
type: SiteQuality
SIO_000300: -1.729e0

FS
type: SiteQuality
SIO_000300: 1.3764e1

DP
type: SiteQuality
SIO_000300: 3.237015e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 221
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 837
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1733
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 383
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variant carriers: 0

GenotypeQuality
all individuals: 3121
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variant carriers: 0

GenotypeQuality
all individuals: 3353
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 3.231456e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.91e0

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: -3.338e0

FS
type: SiteQuality
SIO_000300: 2.1618e1

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 394
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39165
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 48
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GenotypeQuality
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GenotypeQuality
all individuals: 493
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
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variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504800312998465e-5
allele num: 66454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

DP
type: SiteQuality
SIO_000300: 3.229004e6

VQSLOD
type: SiteQuality
SIO_000300: -4.561e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.2e-1

QD
type: SiteQuality
SIO_000300: 1.614e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

GenotypeQuality
all individuals: 2454
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2152
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GenotypeQuality
all individuals: 1994
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.242544731610338e-4
allele num: 8048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.222e0

MQRankSum
type: SiteQuality
SIO_000300: 4.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.001841e6

MQ
type: SiteQuality
SIO_000300: 5.847e1

VQSLOD
type: SiteQuality
SIO_000300: -1.643e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.019e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 767
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8048
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.171315724512466e-5
allele num: 16204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.048e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.295e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.007716e6

QD
type: SiteQuality
SIO_000300: 3.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.077e-1

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 647
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GenotypeQuality
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 216
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GenotypeQuality
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GenotypeQuality
all individuals: 11260
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GenotypeQuality
all individuals: 29485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.75800156128025e-5
allele num: 10248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.07e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

DP
type: SiteQuality
SIO_000300: 2.079842e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 1232
bin: 8.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 31190
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GenotypeQuality
all individuals: 1789
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.865706500583885e-4
allele num: 10276
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.629272567922875e-4
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 313
allele frequency: 4.773815697160113e-3
allele num: 65566
num of homozygotes: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.838798651547655e-3
allele num: 6526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.105292e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.723e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

QD
type: SiteQuality
SIO_000300: 1.594e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509297271190534e-5
allele num: 66256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 2.141012e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

FS
type: SiteQuality
SIO_000300: 8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 601
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GenotypeQuality
all individuals: 2003
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.66e0

DP
type: SiteQuality
SIO_000300: 2.14608e6

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e0

FS
type: SiteQuality
SIO_000300: 1.985e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.079e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
all individuals: 35716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2007
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 605
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variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.038774766014343e-4
allele num: 16454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.149135e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.912e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.338e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.763e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.316e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.883e0

DP
type: SiteQuality
SIO_000300: 2.151094e6

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 1836
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GenotypeQuality
all individuals: 11253
bin: 9.75e1
variant carriers: 14

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.250480954213159e-3
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.329e0

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.152447e6

GenotypeQuality
all individuals: 1225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36099
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 769
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GenotypeQuality
all individuals: 11242
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

QD
type: SiteQuality
SIO_000300: 1.245e1

FS
type: SiteQuality
SIO_000300: 3.793e0

DP
type: SiteQuality
SIO_000300: 2.154794e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.106e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.009e1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.474e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.428e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

DP
type: SiteQuality
SIO_000300: 2.154963e6

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.462e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.154994e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.609e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

FS
type: SiteQuality
SIO_000300: 5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

DP
type: SiteQuality
SIO_000300: 2.155116e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

QD
type: SiteQuality
SIO_000300: 1.127e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.127e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.609e0

FS
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

DP
type: SiteQuality
SIO_000300: 2.155116e6

GenotypeQuality
all individuals: 36090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.154986e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.228e1

MQ
type: SiteQuality
SIO_000300: 5.918e1

VQSLOD
type: SiteQuality
SIO_000300: -2.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.742e0

MQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498155756139982e-5
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 1.172e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 8.74e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

DP
type: SiteQuality
SIO_000300: 2.15512e6

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 32

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 32
allele frequency: 3.721795766457316e-3
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

DP
type: SiteQuality
SIO_000300: 2.157511e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

FS
type: SiteQuality
SIO_000300: 3.333e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.184e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.333e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.157511e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000120004800192e-5
allele num: 66664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.729e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.256e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

DP
type: SiteQuality
SIO_000300: 2.154296e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.785e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013863773357444e-5
allele num: 66360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.5220700152207e-4
allele num: 6570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 2.121664e6

FS
type: SiteQuality
SIO_000300: 1.483e0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

MQ
type: SiteQuality
SIO_000300: 5.859e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.424e0

QD
type: SiteQuality
SIO_000300: 1.512e1

GenotypeQuality
all individuals: 2064
bin: 4.25e1
variant carriers: 15

GenotypeQuality
all individuals: 3985
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1854
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 4157
bin: 3.25e1
variant carriers: 20

GenotypeQuality
all individuals: 1407
bin: 7.75e1
variant carriers: 27

GenotypeQuality
all individuals: 13276
bin: 9.75e1
variant carriers: 2922

GenotypeQuality
all individuals: 13591
bin: 6.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1039
bin: 5.75e1
variant carriers: 17

GenotypeQuality
all individuals: 949
bin: 7.5e0
variant carriers: 16

GenotypeQuality
all individuals: 3904
bin: 6.75e1
variant carriers: 20

GenotypeQuality
all individuals: 803
bin: 1.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1243
bin: 7.25e1
variant carriers: 25

GenotypeQuality
all individuals: 935
bin: 8.25e1
variant carriers: 27

GenotypeQuality
all individuals: 640
bin: 1.75e1
variant carriers: 20

European (Finnish)
type: Population
allele count: 64
allele frequency: 1.011697755295606e-2
allele num: 6326
num of homozygotes: 0

Latino
type: Population
allele count: 236
allele frequency: 2.247191011235955e-2
allele num: 10502
num of homozygotes: 2

East Asian
type: Population
allele count: 38
allele frequency: 4.894384337970119e-3
allele num: 7764
num of homozygotes: 0

South Asian
type: Population
allele count: 392
allele frequency: 2.518632742225649e-2
allele num: 15564
num of homozygotes: 2

African
type: Population
allele count: 1439
allele frequency: 1.464183964183964e-1
allele num: 9828
num of homozygotes: 80

Other
type: Population
allele count: 18
allele frequency: 2.073732718894009e-2
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1089
allele frequency: 1.774540477121627e-2
allele num: 61368
num of homozygotes: 6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

QD
type: SiteQuality
SIO_000300: 1.001e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.04e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 2.077146e6

GenotypeQuality
all individuals: 1854
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2064
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13276
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 4157
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.904399162064369e-4
allele num: 10502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 3.091190108191654e-3
allele num: 7764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.077146e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.001e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

GenotypeQuality
all individuals: 13591
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1957
bin: 4.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1039
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3904
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 1.25e1
variant carriers: 21

GenotypeQuality
all individuals: 13276
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 640
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2765
bin: 2.75e1
variant carriers: 22

GenotypeQuality
all individuals: 1854
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 1173
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1407
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 502
bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 88
allele frequency: 1.433972102724547e-3
allele num: 61368
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.287995878413189e-3
allele num: 7764
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 2.380498952580461e-3
allele num: 10502
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.157509157509158e-4
allele num: 9828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.161555485298767e-4
allele num: 6326
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.710100231303007e-4
allele num: 15564
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.152073732718894e-3
allele num: 868
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

QD
type: SiteQuality
SIO_000300: 1.001e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.04e-2

DP
type: SiteQuality
SIO_000300: 2.077146e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

GenotypeQuality
all individuals: 298
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4810
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2913
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11375
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11499
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.237317495669389e-4
allele num: 8082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

DP
type: SiteQuality
SIO_000300: 2.022444e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.4e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

GenotypeQuality
all individuals: 286
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 331
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13412
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3456
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5774
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

VQSLOD
type: SiteQuality
SIO_000300: 9.87e-1

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

DP
type: SiteQuality
SIO_000300: 2.018733e6

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 16963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13427
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 293
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.641218594489623e-4
allele num: 16478
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.022101111077655e-5
allele num: 66422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.69e0

DP
type: SiteQuality
SIO_000300: 2.021571e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

QD
type: SiteQuality
SIO_000300: 1.406e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

GenotypeQuality
all individuals: 13427
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4694
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

DP
type: SiteQuality
SIO_000300: 2.021571e6

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

QD
type: SiteQuality
SIO_000300: 1.406e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

GenotypeQuality
all individuals: 201
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3973
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8273
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
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GenotypeQuality
all individuals: 2376
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
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GenotypeQuality
all individuals: 5809
bin: 7.75e1
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GenotypeQuality
all individuals: 13421
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4710
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.48e0

DP
type: SiteQuality
SIO_000300: 2.022335e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.184e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.216e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.991e0

GenotypeQuality
all individuals: 8321
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

Other
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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MQ
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Latino
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allele frequency: 1.734605377276669e-3
allele num: 11530
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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ReadPosRankSum
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FS
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DP
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.502945773716484e-5
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European (Finnish)
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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DP
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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Latino
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South Asian
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European (Non-Finnish)
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allele num: 66578
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QD
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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African
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Other
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European (Non-Finnish)
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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Latino
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European (Finnish)
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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African
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European (Finnish)
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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South Asian
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East Asian
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European (Finnish)
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

East Asian
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allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 8.82e-1

QD
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FS
type: SiteQuality
SIO_000300: 9.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
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SIO_000300: 5.915e1

ReadPosRankSum
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SIO_000300: 2.16e0

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

BaseQRankSum
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SIO_000300: 3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.093e0

DP
type: SiteQuality
SIO_000300: 2.037237e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.498965237995261e-5
allele num: 66682
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
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MQRankSum
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SIO_000300: -3.76e-1

ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
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SIO_000300: 6.226e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
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SIO_000300: 2.037686e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

MQ
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SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
SIO_000300: 9.07e-1

ClippingRankSum
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ReadPosRankSum
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SIO_000300: 1.52e0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 7.1e-3

BaseQRankSum
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SIO_000300: 2.13e0

QD
type: SiteQuality
SIO_000300: 1.408e1

DP
type: SiteQuality
SIO_000300: 2.037769e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.491e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e-1

FS
type: SiteQuality
SIO_000300: 5.811e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.08e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

DP
type: SiteQuality
SIO_000300: 2.038018e6

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

FS
type: SiteQuality
SIO_000300: 4.776e0

DP
type: SiteQuality
SIO_000300: 2.038581e6

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

QD
type: SiteQuality
SIO_000300: 1.758e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.005981903988938e-5
allele num: 66534
num of homozygotes: 0

Other
type: Population
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allele frequency: 2.2271714922049e-3
allele num: 898
num of homozygotes: 0

South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.534683855125844e-4
allele num: 6516
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.73e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.34063e2

InbreedingCoeff
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-1

QD
type: SiteQuality
SIO_000300: 1.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

East Asian
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African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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Latino
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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FS
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MQ
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ClippingRankSum
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
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African
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13486
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4730
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

FS
type: SiteQuality
SIO_000300: 6.659e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

DP
type: SiteQuality
SIO_000300: 2.043349e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 5856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4046
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18138
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13489
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

FS
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

DP
type: SiteQuality
SIO_000300: 2.043895e6

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.293e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13491
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4046
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496133325340207e-5
allele num: 66724
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.964e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.91e-1

DP
type: SiteQuality
SIO_000300: 2.044184e6

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

FS
type: SiteQuality
SIO_000300: 5.42e-1

GenotypeQuality
all individuals: 8482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.269e1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.473e0

FS
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 2.044083e6