http://identifiers.org/exac.variant/6-32150391-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150391
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150391
    reference: chr 6
allele count: 1
allele frequency: 8.60540763815982e-6
allele num: 116206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.824G>T
  hgvsp: ENSP00000387887.2:p.Cys275Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-675C>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.734G>T
  hgvsp: ENSP00000364208.3:p.Cys245Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.869G>T
  hgvsp: ENSP00000364211.3:p.Cys290Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.776G>T
  hgvsp: ENSP00000364217.4:p.Cys259Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.318G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.*28G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.318G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.983G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.776G>T
  hgvsp: ENSP00000364195.2:p.Cys259Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.473G>T
  hgvsp: ENSP00000364210.3:p.Cys158Phe
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys259Phe
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

6-32150391-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150391
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150391
    reference: chr 6
allele count: 4
allele frequency: 3.442163055263928e-5
allele num: 116206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.869G>A
  hgvsp: ENSP00000364211.3:p.Cys290Tyr
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.734G>A
  hgvsp: ENSP00000364208.3:p.Cys245Tyr
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.*28G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.318G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.824G>A
  hgvsp: ENSP00000387887.2:p.Cys275Tyr
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.776G>A
  hgvsp: ENSP00000364217.4:p.Cys259Tyr
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.473G>A
  hgvsp: ENSP00000364210.3:p.Cys158Tyr
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.776G>A
  hgvsp: ENSP00000364195.2:p.Cys259Tyr
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-675C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.318G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.983G>A
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys259Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

6-32150404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150404
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150404
    reference: chr 6
allele count: 4
allele frequency: 3.442103813851025e-5
allele num: 116208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.*15G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.811G>A
  hgvsp: ENSP00000387887.2:p.Val271Ile
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.305G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.856G>A
  hgvsp: ENSP00000364211.3:p.Val286Ile
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.460G>A
  hgvsp: ENSP00000364210.3:p.Val154Ile
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.721G>A
  hgvsp: ENSP00000364208.3:p.Val241Ile
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.763G>A
  hgvsp: ENSP00000364217.4:p.Val255Ile
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.763G>A
  hgvsp: ENSP00000364195.2:p.Val255Ile
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.305G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.970G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-662C>T
  variant of: http://identifiers.org/hgnc/10068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val255Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD

6-32150405-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150405
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150405
    reference: chr 6
allele count: 1
allele frequency: 8.605259534627564e-6
allele num: 116208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.720C>T
  hgvsp: ENST00000375067.3:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.762C>T
  hgvsp: ENST00000375076.4:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.969C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.762C>T
  hgvsp: ENST00000375055.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-661G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.304C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.304C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.459C>T
  hgvsp: ENST00000375069.3:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.810C>T
  hgvsp: ENST00000438221.2:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.855C>T
  hgvsp: ENST00000375070.3:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.*14C>T
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr254Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

6-32150405-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150405
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150405
    reference: chr 6
allele count: 3
allele frequency: 2.581577860388269e-5
allele num: 116208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.304C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.*14C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.459C>A
  hgvsp: ENST00000375069.3:c.459C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-661G>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.762C>A
  hgvsp: ENST00000375076.4:c.762C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.969C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.720C>A
  hgvsp: ENST00000375067.3:c.720C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.304C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.855C>A
  hgvsp: ENST00000375070.3:c.855C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.810C>A
  hgvsp: ENST00000438221.2:c.810C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.762C>A
  hgvsp: ENST00000375055.2:c.762C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr254Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD

6-32150407-TTCCACCAGGAGCTACTGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150407
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150389
    reference: chr 6
allele count: 1
allele frequency: 8.605259534627564e-6
allele num: 116208
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsp: ENSP00000364217.4:p.Ala248_Gly253del
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsp: ENSP00000387887.2:p.Ala264_Gly269del
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsp: ENSP00000364208.3:p.Ala234_Gly239del
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsp: ENSP00000364211.3:p.Ala279_Gly284del
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsp: ENSP00000364210.3:p.Ala147_Gly152del
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsp: ENSP00000364195.2:p.Ala248_Gly253del
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala248_Gly253del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: TTCCACCAGGAGCTACTGC
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

6-32150413-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150413
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150413
    reference: chr 6
allele count: 1
allele frequency: 8.605259534627564e-6
allele num: 116208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.712G>A
  hgvsp: ENSP00000364208.3:p.Gly238Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-653C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.296G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.754G>A
  hgvsp: ENSP00000364217.4:p.Gly252Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.296G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.802G>A
  hgvsp: ENSP00000387887.2:p.Gly268Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.847G>A
  hgvsp: ENSP00000364211.3:p.Gly283Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.754G>A
  hgvsp: ENSP00000364195.2:p.Gly252Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.451G>A
  hgvsp: ENSP00000364210.3:p.Gly151Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.961G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.*6G>A
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly252Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-32150418-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150418
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150418
    reference: chr 6
allele count: 1
allele frequency: 8.60540763815982e-6
allele num: 116206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.*1C>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.797C>G
  hgvsp: ENSP00000387887.2:p.Ala266Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.291C>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.956C>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.446C>G
  hgvsp: ENSP00000364210.3:p.Ala149Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.707C>G
  hgvsp: ENSP00000364208.3:p.Ala236Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-648G>C
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.749C>G
  hgvsp: ENSP00000364195.2:p.Ala250Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.749C>G
  hgvsp: ENSP00000364217.4:p.Ala250Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.291C>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.842C>G
  hgvsp: ENSP00000364211.3:p.Ala281Gly
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala250Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

6-32150423-TGCTCCACCTTCTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150423
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150410
    reference: chr 6
allele count: 1
allele frequency: 8.605555746790128e-6
allele num: 116204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsp: ENSP00000364206.5:p.Gln117SerfsTer12
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsp: ENSP00000364210.3:p.Pro143GlnfsTer2
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsp: ENSP00000364217.4:p.Pro244GlnfsTer2
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsp: ENSP00000364211.3:p.Pro275GlnfsTer2
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsp: ENSP00000364195.2:p.Pro244GlnfsTer2
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsp: ENSP00000387887.2:p.Pro260GlnfsTer2
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsp: ENSP00000364208.3:p.Pro230GlnfsTer2
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro244GlnfsTer2
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TGCTCCACCTTCTG
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

6-32150424-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150424
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150424
    reference: chr 6
allele count: 1
allele frequency: 8.605703860518751e-6
allele num: 116202
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.743C>G
  hgvsp: ENSP00000364217.4:p.Ala248Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.743C>G
  hgvsp: ENSP00000364195.2:p.Ala248Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.285C>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.361C>G
  hgvsp: ENSP00000364206.5:p.Gln121Glu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.701C>G
  hgvsp: ENSP00000364208.3:p.Ala234Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-642G>C
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.836C>G
  hgvsp: ENSP00000364211.3:p.Ala279Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.440C>G
  hgvsp: ENSP00000364210.3:p.Ala147Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.950C>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.791C>G
  hgvsp: ENSP00000387887.2:p.Ala264Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.285C>G
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala248Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

6-32150427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150427
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150427
    reference: chr 6
allele count: 2
allele frequency: 1.721111149358026e-5
allele num: 116204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.437G>A
  hgvsp: ENSP00000364210.3:p.Gly146Glu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.947G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.698G>A
  hgvsp: ENSP00000364208.3:p.Gly233Glu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.788G>A
  hgvsp: ENSP00000387887.2:p.Gly263Glu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.740G>A
  hgvsp: ENSP00000364195.2:p.Gly247Glu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.358G>A
  hgvsp: ENSP00000364206.5:p.Glu120Lys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.282G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.833G>A
  hgvsp: ENSP00000364211.3:p.Gly278Glu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.740G>A
  hgvsp: ENSP00000364217.4:p.Gly247Glu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.282G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-639C>T
  variant of: http://identifiers.org/hgnc/10068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly247Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-32150430-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150430
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150430
    reference: chr 6
allele count: 4
allele frequency: 3.442340791738382e-5
allele num: 116200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-636C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.279G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.355G>A
  hgvsp: ENSP00000364206.5:p.Val119Met
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.434G>A
  hgvsp: ENSP00000364210.3:p.Gly145Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.830G>A
  hgvsp: ENSP00000364211.3:p.Gly277Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.695G>A
  hgvsp: ENSP00000364208.3:p.Gly232Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.737G>A
  hgvsp: ENSP00000364195.2:p.Gly246Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.737G>A
  hgvsp: ENSP00000364217.4:p.Gly246Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.785G>A
  hgvsp: ENSP00000387887.2:p.Gly262Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.944G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.279G>A
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly246Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

6-32150431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150431
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150431
    reference: chr 6
allele count: 2
allele frequency: 1.721170395869191e-5
allele num: 116200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.694G>A
  hgvsp: ENSP00000364208.3:p.Gly232Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-635C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.736G>A
  hgvsp: ENSP00000364217.4:p.Gly246Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.736G>A
  hgvsp: ENSP00000364195.2:p.Gly246Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.433G>A
  hgvsp: ENSP00000364210.3:p.Gly145Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.829G>A
  hgvsp: ENSP00000364211.3:p.Gly277Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.278G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.354G>A
  hgvsp: ENST00000375065.5:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.784G>A
  hgvsp: ENSP00000387887.2:p.Gly262Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.943G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.278G>A
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly246Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

6-32150436-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150436
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150436
    reference: chr 6
allele count: 1
allele frequency: 8.605703860518751e-6
allele num: 116202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.731C>A
  hgvsp: ENSP00000364195.2:p.Pro244Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.779C>A
  hgvsp: ENSP00000387887.2:p.Pro260Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.689C>A
  hgvsp: ENSP00000364208.3:p.Pro230Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.273C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-630G>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.824C>A
  hgvsp: ENSP00000364211.3:p.Pro275Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.349C>A
  hgvsp: ENSP00000364206.5:p.Gln117Lys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.273C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.428C>A
  hgvsp: ENSP00000364210.3:p.Pro143Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.731C>A
  hgvsp: ENSP00000364217.4:p.Pro244Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.938C>A
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro244Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

6-32150439-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150439
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150439
    reference: chr 6
allele count: 1
allele frequency: 8.605703860518751e-6
allele num: 116202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.728A>C
  hgvsp: ENSP00000364195.2:p.Glu243Ala
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.686A>C
  hgvsp: ENSP00000364208.3:p.Glu229Ala
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.270A>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.935A>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.821A>C
  hgvsp: ENSP00000364211.3:p.Glu274Ala
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.346A>C
  hgvsp: ENSP00000364206.5:p.Ser116Arg
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.425A>C
  hgvsp: ENSP00000364210.3:p.Glu142Ala
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.270A>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.776A>C
  hgvsp: ENSP00000387887.2:p.Glu259Ala
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.728A>C
  hgvsp: ENSP00000364217.4:p.Glu243Ala
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-627T>G
  variant of: http://identifiers.org/hgnc/10068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu243Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

6-32150441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150441
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150441
    reference: chr 6
allele count: 1
allele frequency: 8.605703860518751e-6
allele num: 116202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.774G>A
  hgvsp: ENST00000438221.2:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.344G>A
  hgvsp: ENSP00000364206.5:p.Trp115Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.684G>A
  hgvsp: ENST00000375067.3:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.268G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.726G>A
  hgvsp: ENST00000375076.4:c.726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.726G>A
  hgvsp: ENST00000375055.2:c.726G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.268G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.423G>A
  hgvsp: ENST00000375069.3:c.423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.933G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.819G>A
  hgvsp: ENST00000375070.3:c.819G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-625C>T
  variant of: http://identifiers.org/hgnc/10068
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp115Ter
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

6-32150443-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150443
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150443
    reference: chr 6
allele count: 1
allele frequency: 8.606000103272e-6
allele num: 116198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.266G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.266G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.682G>A
  hgvsp: ENSP00000364208.3:p.Val228Met
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.342G>A
  hgvsp: ENSP00000364206.5:p.Trp114Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.724G>A
  hgvsp: ENSP00000364217.4:p.Val242Met
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-623C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.421G>A
  hgvsp: ENSP00000364210.3:p.Val141Met
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.724G>A
  hgvsp: ENSP00000364195.2:p.Val242Met
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.772G>A
  hgvsp: ENSP00000387887.2:p.Val258Met
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.817G>A
  hgvsp: ENSP00000364211.3:p.Val273Met
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.931G>A
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp114Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

6-32150446-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150446
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150446
    reference: chr 6
allele count: 25
allele frequency: 2.151537058074288e-4
allele num: 116196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.679G>C
  hgvsp: ENSP00000364208.3:p.Val227Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.721G>C
  hgvsp: ENSP00000364217.4:p.Val241Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-620C>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.418G>C
  hgvsp: ENSP00000364210.3:p.Val140Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.928G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.721G>C
  hgvsp: ENSP00000364195.2:p.Val241Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.814G>C
  hgvsp: ENSP00000364211.3:p.Val272Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.769G>C
  hgvsp: ENSP00000387887.2:p.Val257Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.263G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.339G>C
  hgvsp: ENSP00000364206.5:p.Trp113Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.263G>C
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val241Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-32150449-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150449
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150449
    reference: chr 6
allele count: 4
allele frequency: 3.442459292918861e-5
allele num: 116196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-617A>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.718T>C
  hgvsp: ENST00000375076.4:c.718T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.260T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.676T>C
  hgvsp: ENST00000375067.3:c.676T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.415T>C
  hgvsp: ENST00000375069.3:c.415T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.336T>C
  hgvsp: ENST00000375065.5:c.336T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.260T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.766T>C
  hgvsp: ENST00000438221.2:c.766T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.811T>C
  hgvsp: ENST00000375070.3:c.811T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.925T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.718T>C
  hgvsp: ENST00000375055.2:c.718T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu240Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-32150455-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150455
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150455
    reference: chr 6
allele count: 2
allele frequency: 1.721318529993975e-5
allele num: 116190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330G>T
  hgvsp: ENSP00000364206.5:p.Lys110Asn
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.805G>T
  hgvsp: ENSP00000364211.3:p.Val269Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.254G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.670G>T
  hgvsp: ENSP00000364208.3:p.Val224Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.409G>T
  hgvsp: ENSP00000364210.3:p.Val137Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.712G>T
  hgvsp: ENSP00000364217.4:p.Val238Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-611C>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.254G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.919G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.712G>T
  hgvsp: ENSP00000364195.2:p.Val238Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.760G>T
  hgvsp: ENSP00000387887.2:p.Val254Phe
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val238Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

6-32150474-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150474
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150474
    reference: chr 6
allele count: 6
allele frequency: 5.165556072111162e-5
allele num: 116154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.900G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.693G>C
  hgvsp: ENSP00000364195.2:p.Glu231Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.786G>C
  hgvsp: ENSP00000364211.3:p.Glu262Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.651G>C
  hgvsp: ENSP00000364208.3:p.Glu217Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-19G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.741G>C
  hgvsp: ENSP00000387887.2:p.Glu247Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.235G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.235G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.390G>C
  hgvsp: ENSP00000364210.3:p.Glu130Asp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-592C>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.693G>C
  hgvsp: ENSP00000364217.4:p.Glu231Asp
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu231Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-32150498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150498
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150498
    reference: chr 6
allele count: 2304
allele frequency: 1.985351141749246e-2
allele num: 116050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.211C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.211C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.692-23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.389-23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.692-23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.899-23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-43C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.650-23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.785-23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-568G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.740-23C>T
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 679
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8814
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 11728
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 5.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 6.25e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 4.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 4
num of homozygotes: 74
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

6-32150504-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150504
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150504
    reference: chr 6
allele count: 1
allele frequency: 8.621432882145012e-6
allele num: 115990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-49C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.205C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.692-29C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.205C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.899-29C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.650-29C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.692-29C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.785-29C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.740-29C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-562G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.389-29C>T
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

6-32150505-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150505
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150505
    reference: chr 6
allele count: 31
allele frequency: 2.672736364733675e-4
allele num: 115986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.692-30T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.899-30T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.692-30T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-50T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.204T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.204T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.740-30T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.389-30T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-561A>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.785-30T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.650-30T>C
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12555
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-32150506-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150506
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150506
    reference: chr 6
allele count: 1
allele frequency: 8.622771013692961e-6
allele num: 115972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.785-31C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.203C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.650-31C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.203C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-560G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.740-31C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.692-31C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-51C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.692-31C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.389-31C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.899-31C>T
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

6-32150523-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150523
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150523
    reference: chr 6
allele count: 49
allele frequency: 4.230337563670897e-4
allele num: 115830
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-68A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.186A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.650-48A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.389-48A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.899-48A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.186A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.785-48A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.740-48A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.692-48A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-543T>C
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.692-48A>G
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

6-32150527-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150527
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150527
    reference: chr 6
allele count: 2
allele frequency: 1.727354384025427e-5
allele num: 115784
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.692-52T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.740-52T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-539A>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.182T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-72T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.389-52T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.899-52T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.692-52T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.182T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.785-52T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.650-52T>C
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

6-32150558-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150558
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150558
    reference: chr 6
allele count: 1
allele frequency: 8.658158582832603e-6
allele num: 115498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+60T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+60T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+60T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.151T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.151T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+60T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+60T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-508A>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+60T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-103T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+60T>C
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

6-32150560-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150560
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150560
    reference: chr 6
allele count: 42
allele frequency: 3.63648957539655e-4
allele num: 115496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+58C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+58C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+58C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.149C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+58C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.149C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+58C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+58C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-105C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+58C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-506G>T
  variant of: http://identifiers.org/hgnc/10068
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-32150561-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150561
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150561
    reference: chr 6
allele count: 42
allele frequency: 3.636930430716475e-4
allele num: 115482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.148C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-505G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+57C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.148C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+57C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+57C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+57C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+57C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-106C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+57C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+57C>T
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11930
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

6-32150564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150564
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150564
    reference: chr 6
allele count: 1
allele frequency: 8.661158170070502e-6
allele num: 115458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+54G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+54G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+54G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+54G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.145G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+54G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+54G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-502C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+54G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.145G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-109G>A
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5077
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

6-32150570-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150570
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150569
    reference: chr 6
allele count: 1
allele frequency: 8.663109016563865e-6
allele num: 115432
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+47delG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+47delG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-116delG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+47delG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.138delG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+47delG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+47delG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.138delG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+47delG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-494delC
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+47delG
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5076
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TC
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/6-32150571-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150571
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150571
    reference: chr 6
allele count: 1
allele frequency: 8.664309974353643e-6
allele num: 115416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+47G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+47G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+47G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.138G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+47G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+47G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+47G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+47G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.138G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-495C>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-116G>T
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4211
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

6-32150577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150577
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150577
    reference: chr 6
allele count: 6
allele frequency: 5.201650657141866e-5
allele num: 115348
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+41G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.132G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+41G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.132G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-489C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+41G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+41G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+41G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+41G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+41G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-122G>A
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-32150578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150578
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150578
    reference: chr 6
allele count: 5
allele frequency: 4.333882291756956e-5
allele num: 115370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.131C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-488G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-123C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.131C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+40C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+40C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+40C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+40C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+40C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+40C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+40C>T
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ

6-32150585-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150585
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150585
    reference: chr 6
allele count: 1
allele frequency: 8.671372331385166e-6
allele num: 115322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+33G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+33G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+33G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.124G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+33G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.124G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-130G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+33G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+33G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-481C>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+33G>C
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8061
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

6-32150585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150585
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150585
    reference: chr 6
allele count: 5
allele frequency: 4.335686165692583e-5
allele num: 115322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.124G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+33G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-481C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.124G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-130G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+33G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+33G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+33G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+33G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+33G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+33G>A
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8061
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

6-32150586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150586
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150586
    reference: chr 6
allele count: 1
allele frequency: 8.672876446202148e-6
allele num: 115302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+32C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-131C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+32C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+32C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-480G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.123C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+32C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+32C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+32C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.123C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+32C>T
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

6-32150594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150594
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150594
    reference: chr 6
allele count: 1
allele frequency: 8.674230595746157e-6
allele num: 115284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+24C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.115C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+24C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-472G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+24C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-139C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+24C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.115C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+24C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+24C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+24C>T
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

6-32150595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150595
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150595
    reference: chr 6
allele count: 1
allele frequency: 8.674531575294935e-6
allele num: 115280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.114C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-140C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.114C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+23C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-471G>A
  variant of: http://identifiers.org/hgnc/10068
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

6-32150599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150599
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150599
    reference: chr 6
allele count: 1
allele frequency: 8.674381082909734e-6
allele num: 115282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-467C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.110G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+19G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+19G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+19G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-144G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+19G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.110G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+19G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+19G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+19G>A
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

6-32150601-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150601
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150601
    reference: chr 6
allele count: 1
allele frequency: 8.675735702387563e-6
allele num: 115264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+17A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+17A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-146A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.108A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+17A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.108A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+17A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+17A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+17A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+17A>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-465T>C
  variant of: http://identifiers.org/hgnc/10068
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13198
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

6-32150602-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150602
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150602
    reference: chr 6
allele count: 2
allele frequency: 1.734936414580406e-5
allele num: 115278
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+16G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+16G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+16G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.107G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-464C>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.107G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+16G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+16G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+16G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+16G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-147G>C
  variant of: http://identifiers.org/hgnc/320
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

6-32150613-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150613
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150613
    reference: chr 6
allele count: 1
allele frequency: 8.676036786395974e-6
allele num: 115260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898+5G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784+5G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691+5G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739+5G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388+5G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-158G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-453C>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649+5G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.96G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.96G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691+5G>C
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.691+5G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/6-32150618-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150618
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150618
    reference: chr 6
allele count: 1
allele frequency: 8.674682072902028e-6
allele num: 115278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388G>T
  hgvsp: ENSP00000364210.3:p.Glu130Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784G>T
  hgvsp: ENSP00000364211.3:p.Glu262Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739G>T
  hgvsp: ENSP00000387887.2:p.Glu247Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691G>T
  hgvsp: ENSP00000364195.2:p.Glu231Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-448C>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.91G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649G>T
  hgvsp: ENSP00000364208.3:p.Glu217Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691G>T
  hgvsp: ENSP00000364217.4:p.Glu231Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-163G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.91G>T
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu231Ter
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

6-32150618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150618
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150618
    reference: chr 6
allele count: 1
allele frequency: 8.674682072902028e-6
allele num: 115278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.898G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.649G>A
  hgvsp: ENSP00000364208.3:p.Glu217Lys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.691G>A
  hgvsp: ENSP00000364195.2:p.Glu231Lys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-448C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.739G>A
  hgvsp: ENSP00000387887.2:p.Glu247Lys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.91G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.691G>A
  hgvsp: ENSP00000364217.4:p.Glu231Lys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.388G>A
  hgvsp: ENSP00000364210.3:p.Glu130Lys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.784G>A
  hgvsp: ENSP00000364211.3:p.Glu262Lys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-163G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.91G>A
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu231Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-32150619-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150619
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150619
    reference: chr 6
allele count: 1
allele frequency: 8.674381082909734e-6
allele num: 115282
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.690G>C
  hgvsp: ENSP00000364217.4:p.Trp230Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.897G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.387G>C
  hgvsp: ENSP00000364210.3:p.Trp129Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.90G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.648G>C
  hgvsp: ENSP00000364208.3:p.Trp216Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-164G>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.690G>C
  hgvsp: ENSP00000364195.2:p.Trp230Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-447C>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.738G>C
  hgvsp: ENSP00000387887.2:p.Trp246Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.783G>C
  hgvsp: ENSP00000364211.3:p.Trp261Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.90G>C
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp230Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-32150619-CCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150619
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150617
    reference: chr 6
allele count: 2
allele frequency: 1.734876216581947e-5
allele num: 115282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.688_689delTG
  hgvsp: ENSP00000364195.2:p.Trp230GlyfsTer30
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.88_89delTG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.688_689delTG
  hgvsp: ENSP00000364217.4:p.Trp230GlyfsTer30
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-166_330-165delTG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.781_782delTG
  hgvsp: ENSP00000364211.3:p.Trp261GlyfsTer30
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.385_386delTG
  hgvsp: ENSP00000364210.3:p.Trp129GlyfsTer30
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.646_647delTG
  hgvsp: ENSP00000364208.3:p.Trp216GlyfsTer30
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.88_89delTG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.736_737delTG
  hgvsp: ENSP00000387887.2:p.Trp246GlyfsTer30
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.895_896delTG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-446_446-445delCA
  variant of: http://identifiers.org/hgnc/10068
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp230GlyfsTer30
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: CCA
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

6-32150626-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150626
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150626
    reference: chr 6
allele count: 1
allele frequency: 8.673177331783726e-6
allele num: 115298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-440C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.776G>A
  hgvsp: ENSP00000364211.3:p.Arg259His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.83G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.683G>A
  hgvsp: ENSP00000364195.2:p.Arg228His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.683G>A
  hgvsp: ENSP00000364217.4:p.Arg228His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-171G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.380G>A
  hgvsp: ENSP00000364210.3:p.Arg127His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.641G>A
  hgvsp: ENSP00000364208.3:p.Arg214His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.890G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.731G>A
  hgvsp: ENSP00000387887.2:p.Arg244His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.83G>A
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg228His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

6-32150627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150627
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150627
    reference: chr 6
allele count: 3
allele frequency: 2.601727547091269e-5
allele num: 115308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.682C>T
  hgvsp: ENSP00000364195.2:p.Arg228Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-439G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-172C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.82C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.379C>T
  hgvsp: ENSP00000364210.3:p.Arg127Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.730C>T
  hgvsp: ENSP00000387887.2:p.Arg244Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.775C>T
  hgvsp: ENSP00000364211.3:p.Arg259Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.889C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.682C>T
  hgvsp: ENSP00000364217.4:p.Arg228Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.82C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.640C>T
  hgvsp: ENSP00000364208.3:p.Arg214Cys
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg228Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

6-32150629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150629
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150629
    reference: chr 6
allele count: 2
allele frequency: 1.734094022577904e-5
allele num: 115334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-174C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.728C>T
  hgvsp: ENSP00000387887.2:p.Pro243Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.887C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.773C>T
  hgvsp: ENSP00000364211.3:p.Pro258Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.80C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.377C>T
  hgvsp: ENSP00000364210.3:p.Pro126Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.80C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.638C>T
  hgvsp: ENSP00000364208.3:p.Pro213Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.680C>T
  hgvsp: ENSP00000364195.2:p.Pro227Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.680C>T
  hgvsp: ENSP00000364217.4:p.Pro227Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-437G>A
  variant of: http://identifiers.org/hgnc/10068
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro227Leu
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

6-32150633-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150633
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150633
    reference: chr 6
allele count: 2
allele frequency: 1.733613022901028e-5
allele num: 115366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-433G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.634C>T
  hgvsp: ENSP00000364208.3:p.Gln212Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.769C>T
  hgvsp: ENSP00000364211.3:p.Gln257Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.76C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.373C>T
  hgvsp: ENSP00000364210.3:p.Gln125Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.724C>T
  hgvsp: ENSP00000387887.2:p.Gln242Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.676C>T
  hgvsp: ENSP00000364217.4:p.Gln226Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.676C>T
  hgvsp: ENSP00000364195.2:p.Gln226Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.883C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.76C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-178C>T
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln226Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-32150636-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150636
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150636
    reference: chr 6
allele count: 1
allele frequency: 8.665811639918195e-6
allele num: 115396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.631A>C
  hgvsp: ENSP00000364208.3:p.Ile211Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.673A>C
  hgvsp: ENSP00000364217.4:p.Ile225Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-430T>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.880A>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.73A>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.766A>C
  hgvsp: ENSP00000364211.3:p.Ile256Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.370A>C
  hgvsp: ENSP00000364210.3:p.Ile124Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.721A>C
  hgvsp: ENSP00000387887.2:p.Ile241Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.673A>C
  hgvsp: ENSP00000364195.2:p.Ile225Leu
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-181A>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.73A>C
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile225Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

6-32150648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150648
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150648
    reference: chr 6
allele count: 2
allele frequency: 1.7307625739901e-5
allele num: 115556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.61C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.700C>T
  hgvsp: ENSP00000398466.1:p.Arg234Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.358C>T
  hgvsp: ENSP00000364210.3:p.Arg120Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.754C>T
  hgvsp: ENSP00000364211.3:p.Arg252Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.661C>T
  hgvsp: ENSP00000364217.4:p.Arg221Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.661C>T
  hgvsp: ENSP00000364195.2:p.Arg221Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.868C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.709C>T
  hgvsp: ENSP00000387887.2:p.Arg237Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.61C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-418G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.619C>T
  hgvsp: ENSP00000364208.3:p.Arg207Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-193C>T
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg221Cys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-32150649-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150649
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150649
    reference: chr 6
allele count: 1
allele frequency: 8.652614820198665e-6
allele num: 115572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.708G>T
  hgvsp: ENSP00000387887.2:p.Leu236Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.357G>T
  hgvsp: ENSP00000364210.3:p.Leu119Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.660G>T
  hgvsp: ENSP00000364195.2:p.Leu220Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-417C>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.753G>T
  hgvsp: ENSP00000364211.3:p.Leu251Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.660G>T
  hgvsp: ENSP00000364217.4:p.Leu220Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.867G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.618G>T
  hgvsp: ENSP00000364208.3:p.Leu206Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.60G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.699G>T
  hgvsp: ENSP00000398466.1:p.Leu233Phe
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.60G>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-194G>T
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu220Phe
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD

6-32150656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150656
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150656
    reference: chr 6
allele count: 7
allele frequency: 6.051698798305525e-5
allele num: 115670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.746G>A
  hgvsp: ENSP00000364211.3:p.Arg249Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.350G>A
  hgvsp: ENSP00000364210.3:p.Arg117Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.653G>A
  hgvsp: ENSP00000364217.4:p.Arg218Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.701G>A
  hgvsp: ENSP00000387887.2:p.Arg234Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-410C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.692G>A
  hgvsp: ENSP00000398466.1:p.Arg231Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-201G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.53G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.860G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.653G>A
  hgvsp: ENSP00000364195.2:p.Arg218Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.611G>A
  hgvsp: ENSP00000364208.3:p.Arg204Gln
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.53G>A
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg218Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-32150657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150657
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150657
    reference: chr 6
allele count: 4
allele frequency: 3.456738912509938e-5
allele num: 115716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-409G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.652C>T
  hgvsp: ENSP00000364195.2:p.Arg218Trp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.700C>T
  hgvsp: ENSP00000387887.2:p.Arg234Trp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.652C>T
  hgvsp: ENSP00000364217.4:p.Arg218Trp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.745C>T
  hgvsp: ENSP00000364211.3:p.Arg249Trp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.52C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.859C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.691C>T
  hgvsp: ENSP00000398466.1:p.Arg231Trp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.349C>T
  hgvsp: ENSP00000364210.3:p.Arg117Trp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.610C>T
  hgvsp: ENSP00000364208.3:p.Arg204Trp
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.700C>T
  hgvsp: ENST00000375056.2:c.700C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-202C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.52C>T
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg218Trp
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

6-32150658-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150658
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150659
    reference: chr 6
allele count: 1
allele frequency: 8.639159582555808e-6
allele num: 115752
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.698dupA
  hgvsp: ENSP00000364196.2:p.His233GlnfsTer?
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-407dupT
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.698dupA
  hgvsp: ENSP00000387887.2:p.His233GlnfsTer44
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.650dupA
  hgvsp: ENSP00000364195.2:p.His217GlnfsTer44
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.743dupA
  hgvsp: ENSP00000364211.3:p.His248GlnfsTer44
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.347dupA
  hgvsp: ENSP00000364210.3:p.His116GlnfsTer44
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.689dupA
  hgvsp: ENSP00000398466.1:p.His230GlnfsTer?
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.650dupA
  hgvsp: ENSP00000364217.4:p.His217GlnfsTer44
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-204dupA
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.50dupA
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.857dupA
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.608dupA
  hgvsp: ENSP00000364208.3:p.His203GlnfsTer44
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.50dupA
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His217GlnfsTer44
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

6-32150663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150663
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150663
    reference: chr 6
allele count: 3
allele frequency: 2.590226213089276e-5
allele num: 115820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.46C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.694C>T
  hgvsp: ENSP00000364196.2:p.Arg232Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.739C>T
  hgvsp: ENSP00000364211.3:p.Arg247Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.685C>T
  hgvsp: ENSP00000398466.1:p.Arg229Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.604C>T
  hgvsp: ENSP00000364208.3:p.Arg202Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.646C>T
  hgvsp: ENSP00000364217.4:p.Arg216Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.853C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.646C>T
  hgvsp: ENSP00000364195.2:p.Arg216Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.343C>T
  hgvsp: ENSP00000364210.3:p.Arg115Ter
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-403G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-208C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.46C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.694C>T
  hgvsp: ENSP00000387887.2:p.Arg232Ter
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg216Ter
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

6-32150663-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150663
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150663
    reference: chr 6
allele count: 1
allele frequency: 8.634087376964255e-6
allele num: 115820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.694C>G
  hgvsp: ENSP00000364196.2:p.Arg232Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-403G>C
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.685C>G
  hgvsp: ENSP00000398466.1:p.Arg229Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.739C>G
  hgvsp: ENSP00000364211.3:p.Arg247Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.853C>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.604C>G
  hgvsp: ENSP00000364208.3:p.Arg202Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.694C>G
  hgvsp: ENSP00000387887.2:p.Arg232Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.343C>G
  hgvsp: ENSP00000364210.3:p.Arg115Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.46C>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.646C>G
  hgvsp: ENSP00000364217.4:p.Arg216Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.646C>G
  hgvsp: ENSP00000364195.2:p.Arg216Gly
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-208C>G
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.46C>G
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg216Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

6-32150666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150666
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150666
    reference: chr 6
allele count: 1
allele frequency: 8.629914736442405e-6
allele num: 115876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.736C>T
  hgvsp: ENSP00000364211.3:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.43C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.340C>T
  hgvsp: ENSP00000364210.3:p.Pro114Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.691C>T
  hgvsp: ENSP00000364196.2:p.Pro231Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.43C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.691C>T
  hgvsp: ENSP00000387887.2:p.Pro231Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-211C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.682C>T
  hgvsp: ENSP00000398466.1:p.Pro228Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.643C>T
  hgvsp: ENSP00000364195.2:p.Pro215Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.643C>T
  hgvsp: ENSP00000364217.4:p.Pro215Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-400G>A
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.601C>T
  hgvsp: ENSP00000364208.3:p.Pro201Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.850C>T
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro215Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

6-32150668-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150668
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150667
    reference: chr 6
allele count: 1
allele frequency: 8.629170046424936e-6
allele num: 115886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-396delG
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.337delC
  hgvsp: ENSP00000364210.3:p.Leu113PhefsTer36
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.640delC
  hgvsp: ENSP00000364195.2:p.Leu214PhefsTer36
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.688delC
  hgvsp: ENSP00000387887.2:p.Leu230PhefsTer36
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.640delC
  hgvsp: ENSP00000364217.4:p.Leu214PhefsTer36
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.40delC
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.733delC
  hgvsp: ENSP00000364211.3:p.Leu245PhefsTer36
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.598delC
  hgvsp: ENSP00000364208.3:p.Leu200PhefsTer36
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-214delC
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.847delC
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.688delC
  hgvsp: ENSP00000364196.2:p.Leu230PhefsTer?
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.679delC
  hgvsp: ENSP00000398466.1:p.Leu227PhefsTer?
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.40delC
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu214PhefsTer36
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: AG
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

6-32150670-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150670
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150670
    reference: chr 6
allele count: 3
allele frequency: 2.588036370537794e-5
allele num: 115918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.639C>A
  hgvsp: ENST00000375055.2:c.639C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.687C>A
  hgvsp: ENST00000438221.2:c.687C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.678C>A
  hgvsp: ENST00000450110.1:c.678C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.639C>A
  hgvsp: ENST00000375076.4:c.639C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.336C>A
  hgvsp: ENST00000375069.3:c.336C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.732C>A
  hgvsp: ENST00000375070.3:c.732C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-396G>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.846C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-215C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.597C>A
  hgvsp: ENST00000375067.3:c.597C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.39C>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.687C>A
  hgvsp: ENST00000375056.2:c.687C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.39C>A
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly213Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

6-32150685-A-ACAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150685
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150688
    reference: chr 6
allele count: 1
allele frequency: 8.619203585588691e-6
allele num: 116020
alternate allele: ACAG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.669_671dupCTG
  hgvsp: ENSP00000387887.2:p.Cys224dup
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.660_662dupCTG
  hgvsp: ENSP00000398466.1:p.Cys221dup
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.621_623dupCTG
  hgvsp: ENSP00000364195.2:p.Cys208dup
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.579_581dupCTG
  hgvsp: ENSP00000364208.3:p.Cys194dup
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.621_623dupCTG
  hgvsp: ENSP00000364217.4:p.Cys208dup
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.828_830dupCTG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-380_446-378dupCAG
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.714_716dupCTG
  hgvsp: ENSP00000364211.3:p.Cys239dup
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.669_671dupCTG
  hgvsp: ENSP00000364196.2:p.Cys224dup
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.318_320dupCTG
  hgvsp: ENSP00000364210.3:p.Cys107dup
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.21_23dupCTG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-233_330-231dupCTG
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.21_23dupCTG
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys208dup
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

6-32150690-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150690
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150690
    reference: chr 6
allele count: 1
allele frequency: 8.617123948710878e-6
allele num: 116048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.667T>C
  hgvsp: ENSP00000387887.2:p.Ser223Pro
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.19T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.619T>C
  hgvsp: ENSP00000364195.2:p.Ser207Pro
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.712T>C
  hgvsp: ENSP00000364211.3:p.Ser238Pro
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.316T>C
  hgvsp: ENSP00000364210.3:p.Ser106Pro
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-235T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.19T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.577T>C
  hgvsp: ENSP00000364208.3:p.Ser193Pro
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.826T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.619T>C
  hgvsp: ENSP00000364217.4:p.Ser207Pro
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.658T>C
  hgvsp: ENSP00000398466.1:p.Ser220Pro
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-376A>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.667T>C
  hgvsp: ENSP00000364196.2:p.Ser223Pro
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser207Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

6-32150692-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150692
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150692
    reference: chr 6
allele count: 5
allele frequency: 4.308487720809996e-5
allele num: 116050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.314T>C
  hgvsp: ENSP00000364210.3:p.Phe105Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.665T>C
  hgvsp: ENSP00000364196.2:p.Phe222Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-237T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.575T>C
  hgvsp: ENSP00000364208.3:p.Phe192Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.665T>C
  hgvsp: ENSP00000387887.2:p.Phe222Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-374A>G
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.17T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.656T>C
  hgvsp: ENSP00000398466.1:p.Phe219Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.710T>C
  hgvsp: ENSP00000364211.3:p.Phe237Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.824T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.617T>C
  hgvsp: ENSP00000364195.2:p.Phe206Ser
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.17T>C
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.617T>C
  hgvsp: ENSP00000364217.4:p.Phe206Ser
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe206Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

6-32150701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150701
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150701
    reference: chr 6
allele count: 4
allele frequency: 3.445721275606016e-5
allele num: 116086
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364217
  ensembl transcript: ENST00000375076
  gene symbol: AGER
  hgvsc: ENST00000375076.4:c.608G>A
  hgvsp: ENSP00000364217.4:p.Arg203His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-246G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.701G>A
  hgvsp: ENSP00000364211.3:p.Arg234His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.647G>A
  hgvsp: ENSP00000398466.1:p.Arg216His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.608G>A
  hgvsp: ENSP00000364195.2:p.Arg203His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.8G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.566G>A
  hgvsp: ENSP00000364208.3:p.Arg189His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.815G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.8G>A
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.305G>A
  hgvsp: ENSP00000364210.3:p.Arg102His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.656G>A
  hgvsp: ENSP00000387887.2:p.Arg219His
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204308
  ensembl protein: ENSP00000407656
  ensembl transcript: ENST00000427134
  gene symbol: RNF5
  hgvsc: ENST00000427134.2:c.446-365C>T
  variant of: http://identifiers.org/hgnc/10068
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.656G>A
  hgvsp: ENSP00000364196.2:p.Arg219His
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg203His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-32150702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 32150702
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 32150702
    reference: chr 6
allele count: 1
allele frequency: 8.613561190738699e-6
allele num: 116096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000473619
  gene symbol: AGER
  hgvsc: ENST00000473619.1:n.7C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364211
  ensembl transcript: ENST00000375070
  gene symbol: AGER
  hgvsc: ENST00000375070.3:c.700C>T
  hgvsp: ENSP00000364211.3:p.Arg234Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364195
  ensembl transcript: ENST00000375055
  gene symbol: AGER
  hgvsc: ENST00000375055.2:c.607C>T
  hgvsp: ENSP00000364195.2:p.Arg203Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000484849
  gene symbol: AGER
  hgvsc: ENST00000484849.1:n.814C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364208
  ensembl transcript: ENST00000375067
  gene symbol: AGER
  hgvsc: ENST00000375067.3:c.565C>T
  hgvsp: ENSP00000364208.3:p.Arg189Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000398466
  ensembl transcript: ENST00000450110
  gene symbol: AGER
  hgvsc: ENST00000450110.1:c.646C>T
  hgvsp: ENSP00000398466.1:p.Arg216Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204305
  ensembl transcript: ENST00000488669
  gene symbol: AGER
  hgvsc: ENST00000488669.1:n.7C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364196
  ensembl transcript: ENST00000375056
  gene symbol: AGER
  hgvsc: ENST00000375056.2:c.655C>T
  hgvsp: ENSP00000364196.2:p.Arg219Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000387887
  ensembl transcript: ENST00000438221
  gene symbol: AGER
  hgvsc: ENST00000438221.2:c.655C>T
  hgvsp: ENSP00000387887.2:p.Arg219Cys
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364206
  ensembl transcript: ENST00000375065
  gene symbol: AGER
  hgvsc: ENST00000375065.5:c.330-247C>T
  variant of: http://identifiers.org/hgnc/320
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204305
  ensembl protein: ENSP00000364210
  ensembl transcript: ENST00000375069
  gene symbol: AGER
  hgvsc: ENST00000375069.3:c.304C>T
  hgvsp: ENSP00000364210.3:p.Arg102Cys
  variant of: http://identifiers.org/hgnc/320
canonical: true
consequence: missense
filter: PASS
hgvs: p.Arg203Cys
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 2993
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14736
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4313
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579229967467863e-5
allele num: 63322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.221e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

FS
type: SiteQuality
SIO_000300: 1.233e0

DP
type: SiteQuality
SIO_000300: 2.229832e6

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
all individuals: 14736
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4313
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.459419576979833e-4
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.229832e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

QD
type: SiteQuality
SIO_000300: 1.304e1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

FS
type: SiteQuality
SIO_000300: 1.233e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.221e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14732
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.316720358789716e-5
allele num: 63324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.229575e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

FS
type: SiteQuality
SIO_000300: 8.811999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4960
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4313
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14728
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579180089697429e-5
allele num: 63324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.52e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

DP
type: SiteQuality
SIO_000300: 2.229194e6

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14728
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 59
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4960
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4313
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.618257985686857e-4
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

DP
type: SiteQuality
SIO_000300: 2.229194e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

QD
type: SiteQuality
SIO_000300: 1.52e1

FS
type: SiteQuality
SIO_000300: 3.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.64e-1

GenotypeQuality
all individuals: 4959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.579180089697429e-5
allele num: 63324
num of homozygotes: 0

MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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SIO_000300: 9.0e-4

QD
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ClippingRankSum
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SIO_000300: 1.55e0

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.579229967467863e-5
allele num: 63322
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8518
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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MQRankSum
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FS
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BaseQRankSum
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DP
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SIO_000300: 2.22899e6

MQ
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SIO_000300: 5.972e1

ReadPosRankSum
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SIO_000300: -5.33e-1

VQSLOD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele num: 9166
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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European (Finnish)
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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MQRankSum
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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European (Non-Finnish)
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allele count: 1
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allele num: 63320
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European (Finnish)
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VQSLOD
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ClippingRankSum
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DP
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FS
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 63318
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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Other
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South Asian
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BaseQRankSum
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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VQSLOD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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Other
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African
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South Asian
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DP
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 63316
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African
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European (Finnish)
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Other
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Latino
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East Asian
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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SIO_000300: 1.3e0

InbreedingCoeff
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SIO_000300: 3.0e-4

MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
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SIO_000300: 1.65e-1

DP
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SIO_000300: 2.228187e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.579379619685388e-5
allele num: 63316
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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SIO_000300: 2.227991e6

QD
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -1.538e0

MQ
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BaseQRankSum
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SIO_000300: -2.436e0

VQSLOD
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SIO_000300: -3.207e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.579379619685388e-5
allele num: 63316
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ClippingRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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SIO_000300: -1.36e-1

InbreedingCoeff
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SIO_000300: 2.3e-3

QD
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MQ
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VQSLOD
type: SiteQuality
SIO_000300: 4.87e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 63316
num of homozygotes: 0

South Asian
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num of homozygotes: 0

African
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num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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QD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.43e0

ClippingRankSum
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SIO_000300: 3.74e-1

DP
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SIO_000300: 2.227731e6

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63314
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele num: 9162
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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VQSLOD
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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East Asian
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South Asian
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BaseQRankSum
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SIO_000300: 8.159999999999999e-1

MQ
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

East Asian
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 6.317917614354308e-5
allele num: 63312
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South Asian
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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MQRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.15905860053704e-5
allele num: 63310
num of homozygotes: 0

South Asian
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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SIO_000300: -1.592e0

DP
type: SiteQuality
SIO_000300: 2.22529e6

GenotypeDepth
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8824
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4076
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
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GenotypeQuality
all individuals: 18
bin: 2.75e1
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GenotypeQuality
all individuals: 4297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14695
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 7.5e0
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GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.689583077112286e-4
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.66e0

QD
type: SiteQuality
SIO_000300: 1.369e1

DP
type: SiteQuality
SIO_000300: 2.22427e6

FS
type: SiteQuality
SIO_000300: 1.108e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

GenotypeQuality
all individuals: 4260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16271
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variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 39
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variant carriers: 1

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2968
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variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 15120
bin: 9.75e1
variant carriers: 2228

GenotypeQuality
all individuals: 2414
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variant carriers: 0

GenotypeQuality
all individuals: 4900
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7820
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4041
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 336
allele frequency: 3.948296122209165e-2
allele num: 8510
num of homozygotes: 8

African
type: Population
allele count: 984
allele frequency: 1.082746478873239e-1
allele num: 9088
num of homozygotes: 51

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.05143721633888e-4
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 491
allele frequency: 3.019680196801968e-2
allele num: 16260
num of homozygotes: 12

European (Non-Finnish)
type: Population
allele count: 317
allele frequency: 5.011065444198545e-3
allele num: 63260
num of homozygotes: 1

Latino
type: Population
allele count: 159
allele frequency: 1.388403772266853e-2
allele num: 11452
num of homozygotes: 2

Other
type: Population
allele count: 13
allele frequency: 1.494252873563218e-2
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.667e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.524e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.44e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.76e0

DP
type: SiteQuality
SIO_000300: 2.259457e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 2517
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 5101
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 690
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GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 4459
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13304
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.183e0

MQRankSum
type: SiteQuality
SIO_000300: 8.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.081e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
SIO_000300: 1.407e1

DP
type: SiteQuality
SIO_000300: 2.147367e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13304
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
all individuals: 3061
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16896
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 684
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variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 5102
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variant carriers: 0

GenotypeQuality
all individuals: 8134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4459
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.643964302489432e-3
allele num: 8516
num of homozygotes: 1

Latino
type: Population
allele count: 1
allele frequency: 8.732099196646873e-5
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.840098400984009e-4
allele num: 16260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.698e1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

DP
type: SiteQuality
SIO_000300: 2.147178e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

GenotypeQuality
all individuals: 4214
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 5103
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 13280
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variant carriers: 1

GenotypeQuality
all individuals: 16864
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 8138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 4469
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variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581077662534784e-5
allele num: 63248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.145578e6

VQSLOD
type: SiteQuality
SIO_000300: -6.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.898e1

QD
type: SiteQuality
SIO_000300: 9.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.173e0

FS
type: SiteQuality
SIO_000300: 7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 5088
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GenotypeQuality
all individuals: 16697
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 8102
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GenotypeQuality
all individuals: 350
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 13282
bin: 9.75e1
variant carriers: 49

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 4448
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GenotypeQuality
all individuals: 2518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3061
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.329915179136599e-4
allele num: 63192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.361573373676248e-3
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 1.44e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 2.143061e6

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8107
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GenotypeQuality
all individuals: 94
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 626
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 13241
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5091
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 4451
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variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.165859372526673e-5
allele num: 63174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

FS
type: SiteQuality
SIO_000300: 1.263e0

DP
type: SiteQuality
SIO_000300: 2.139487e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.576e0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13238
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variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 2.5e0
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GenotypeQuality
all individuals: 528
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GenotypeQuality
all individuals: 2513
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 16336
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 5076
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GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4209
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GenotypeQuality
all individuals: 4442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.151574803149606e-5
allele num: 16256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63042
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.871e0

BaseQRankSum
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DP
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SIO_000300: 2.133408e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 42

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8762
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63046
num of homozygotes: 0

East Asian
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allele count: 42
allele frequency: 4.934210526315789e-3
allele num: 8512
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -4.678e0

ReadPosRankSum
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SIO_000300: 3.91e-1

MQRankSum
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SIO_000300: 2.14e-1

InbreedingCoeff
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SIO_000300: 2.0e-4

MQ
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SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.643e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63036
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8760
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

East Asian
type: Population
allele count: 42
allele frequency: 4.934210526315789e-3
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
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SIO_000300: 5.963e1

ClippingRankSum
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SIO_000300: -6.7e-2

DP
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QD
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MQRankSum
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ReadPosRankSum
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SIO_000300: 2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 5.629999999999999e-1

BaseQRankSum
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SIO_000300: -3.712e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.143379830779785e-4
allele num: 8746
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.131153e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.184e1

BaseQRankSum
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SIO_000300: -3.946e0

ReadPosRankSum
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SIO_000300: 1.61e0

VQSLOD
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SIO_000300: 7.19e-1

MQRankSum
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SIO_000300: -8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.742787200559538e-5
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63010
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.195e1

BaseQRankSum
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SIO_000300: -1.49e-1

FS
type: SiteQuality
SIO_000300: 7.62e-1

InbreedingCoeff
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MQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.130875e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63004
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8730
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.151574803149606e-5
allele num: 16256
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.130573e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.182e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.684e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 3
allele frequency: 3.449068751437112e-4
allele num: 8698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.764324736374032e-5
allele num: 62968
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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QD
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SIO_000300: 1.17e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.539951573849879e-4
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.148897058823529e-4
allele num: 8704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62980
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.742787200559538e-5
allele num: 11438
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.129993e6

QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58856235107228e-5
allele num: 62950
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.129925e6

InbreedingCoeff
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SIO_000300: 2.5e-3

FS
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SIO_000300: 5.18e-1

MQRankSum
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SIO_000300: 7.0e-1

BaseQRankSum
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SIO_000300: 2.35e0

ReadPosRankSum
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SIO_000300: 4.77e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.319e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.742787200559538e-5
allele num: 11438
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.58856235107228e-5
allele num: 62950
num of homozygotes: 0

South Asian
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allele frequency: 1.230314960629921e-4
allele num: 16256
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East Asian
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allele num: 8510
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
type: SiteQuality
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DP
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SIO_000300: 2.129925e6

ClippingRankSum
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SIO_000300: -2.07e-1

MQRankSum
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SIO_000300: 7.0e-1

BaseQRankSum
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SIO_000300: 2.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.589016716455857e-5
allele num: 62932
num of homozygotes: 0

African
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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SIO_000300: 1.801e0

ClippingRankSum
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SIO_000300: -2.54e-1

DP
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MQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62920
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.151543067710732e-4
allele num: 8684
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8508
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South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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MQ
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SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 8684
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.151574803149606e-5
allele num: 16256
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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allele num: 62916
num of homozygotes: 0

Latino
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.717e0

InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
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allele frequency: 1.150483202945237e-4
allele num: 8692
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62906
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
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allele count: 0
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allele num: 6608
num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
SIO_000300: 2.128944e6

VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8508
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.589926227423048e-5
allele num: 62896
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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FS
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VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.350176263219741e-4
allele num: 8510
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: 1.96e0

VQSLOD
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InbreedingCoeff
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FS
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MQ
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QD
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SIO_000300: 1.182e1

ReadPosRankSum
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SIO_000300: 4.46e-1

BaseQRankSum
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SIO_000300: 2.69e0

DP
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SIO_000300: 2.129006e6

MQRankSum
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SIO_000300: 1.49e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.590128482381376e-5
allele num: 62888
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -1.156e0

MQRankSum
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VQSLOD
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FS
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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SIO_000300: 4.17e-1

ClippingRankSum
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SIO_000300: 9.83e-1

DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 62894
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South Asian
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East Asian
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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DP
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SIO_000300: 2.129516e6

ReadPosRankSum
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SIO_000300: 3.91e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 62894
num of homozygotes: 0

DP
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QD
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MQ
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 3.7e-3

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele num: 62894
num of homozygotes: 0

Latino
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BaseQRankSum
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MQRankSum
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QD
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MQ
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16260
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: 3.179953572677839e-5
allele num: 62894
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
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allele num: 62884
num of homozygotes: 0

African
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allele frequency: 1.145737855178735e-4
allele num: 8728
num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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Latino
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South Asian
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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African
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European (Finnish)
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East Asian
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FS
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VQSLOD
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MQ
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MQRankSum
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SIO_000300: 4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

DP
type: SiteQuality
SIO_000300: 2.130161e6

QD
type: SiteQuality
SIO_000300: 1.449e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8074
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.179650238473768e-5
allele num: 62900
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

FS
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.144e1

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 2.130307e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
all individuals: 3077
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.349624060150376e-4
allele num: 8512
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.93e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 2.130736e6

MQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.015e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.589168229348759e-5
allele num: 62926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.130931e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 1.684e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 900
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variant carriers: 0

GenotypeDepth
all individuals: 381
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variant carriers: 1

GenotypeQuality
all individuals: 156
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variant carriers: 0

GenotypeQuality
all individuals: 399
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variant carriers: 0

GenotypeQuality
all individuals: 580
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

FS
type: SiteQuality
SIO_000300: 1.307e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.229e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

DP
type: SiteQuality
SIO_000300: 2.133735e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 8093
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8920
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East Asian
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allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.893e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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SIO_000300: 2.134015e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

FS
type: SiteQuality
SIO_000300: 7.86e-1

QD
type: SiteQuality
SIO_000300: 1.127e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.939028262940616e-5
allele num: 62980
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

VQSLOD
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.441e1

FS
type: SiteQuality
SIO_000300: 5.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.349407917711674e-5
allele num: 62998
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
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BaseQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
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SIO_000300: 8.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ClippingRankSum
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SIO_000300: -1.152e0

QD
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SIO_000300: 1.359e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.586848202100987e-5
allele num: 63018
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.8e-3

DP
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QD
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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MQ
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SIO_000300: 5.881e1

BaseQRankSum
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SIO_000300: 4.71e-1

VQSLOD
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SIO_000300: 4.52e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.758430352441075e-5
allele num: 63046
num of homozygotes: 0

East Asian
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ClippingRankSum
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DP
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VQSLOD
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FS
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MQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 8.66e-1

BaseQRankSum
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SIO_000300: -1.413e0

MQ
type: SiteQuality
SIO_000300: 5.873e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586143450813691e-5
allele num: 63046
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: 5.4e-3

QD
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SIO_000300: 1.534e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.0991426687184e-4
allele num: 9098
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63080
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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FS
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QD
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DP
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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SIO_000300: 5.921e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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Latino
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African
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allele num: 9102
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 63116
num of homozygotes: 0

African
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Latino
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num of homozygotes: 0

Other
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num of homozygotes: 0

DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.582729258333069e-5
allele num: 63182
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 2.141568e6

FS
type: SiteQuality
SIO_000300: 8.855e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.675e0

MQ
type: SiteQuality
SIO_000300: 5.644e1

QD
type: SiteQuality
SIO_000300: 1.679e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.218e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 9.75e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16847
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.094810597766586e-4
allele num: 9134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63204
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 3.826e0

BaseQRankSum
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SIO_000300: 4.66e0

VQSLOD
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SIO_000300: -7.433e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.25e-1

QD
type: SiteQuality
SIO_000300: 1.727e1

MQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

DP
type: SiteQuality
SIO_000300: 2.142268e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.910140800506249e-5
allele num: 63210
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.142462e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 1.762e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

QD
type: SiteQuality
SIO_000300: 1.538e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 160
bin: 8.25e1
variant carriers: 0

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 411
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 375
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 16842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63228
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.492229788720098e-4
allele num: 11454
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

QD
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MQ
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SIO_000300: 5.974e1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

BaseQRankSum
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SIO_000300: 6.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.143552e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0