8-2954595-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2954595
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2954594
    reference: chr 8
allele count: 1
allele frequency: 7.481669908723627e-5
allele num: 13366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6953-37delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6953-37delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5391-5412delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6950-37delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.629-37delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6953-37delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6953-37delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6950-37delT
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24011
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: TA
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

8-2964003-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964003
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964003
    reference: chr 8
allele count: 67411
allele frequency: 8.234309725649231e-1
allele num: 81866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+47A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 475
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.25e1
  variant carriers: 1120
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 1.75e1
  variant carriers: 9807
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 2.75e1
  variant carriers: 1748
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.5e0
  variant carriers: 1331
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.25e1
  variant carriers: 602
genotype depth: GenotypeDepth
  all individuals: 16583
  bin: 7.5e0
  variant carriers: 14935
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.25e1
  variant carriers: 3994
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 605
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 20476
  bin: 1.25e1
  variant carriers: 19590
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 344
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 779
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 5.75e1
  variant carriers: 1132
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 1052
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 6.25e1
  variant carriers: 1506
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 4.25e1
  variant carriers: 2296
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 2.5e0
  variant carriers: 181
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 2.75e1
  variant carriers: 3155
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 2.25e1
  variant carriers: 5336
genotype quality: GenotypeQuality
  all individuals: 15002
  bin: 9.75e1
  variant carriers: 14903
num of homozygotes: 27888
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

8-2964005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964005
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964005
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 83188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+45G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+45G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+45G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+45G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+45G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+45G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+45G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+45G>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

8-2964016-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964016
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964016
    reference: chr 8
allele count: 1
allele frequency: 1.177190751989452e-5
allele num: 84948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+34T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+34T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+34T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+34T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+34T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+34T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+34T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+34T>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19720
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

8-2964017-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964017
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964017
    reference: chr 8
allele count: 410
allele frequency: 4.809835527087586e-3
allele num: 85242
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+33C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19493
  bin: 1.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 16085
  bin: 7.5e0
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10039
  bin: 2.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 1.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 6
num of homozygotes: 2
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

8-2964018-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964018
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964018
    reference: chr 8
allele count: 1
allele frequency: 1.16721525783785e-5
allele num: 85674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+32A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+32A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD

8-2964023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964023
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964023
    reference: chr 8
allele count: 2
allele frequency: 2.301019351572747e-5
allele num: 86918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+27C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+27C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+27C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+27C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+27C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+27C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+27C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+27C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

8-2964024-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964024
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964024
    reference: chr 8
allele count: 1
allele frequency: 1.146368305209098e-5
allele num: 87232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+26A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16536
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16089
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4987
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum

8-2964026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964026
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964026
    reference: chr 8
allele count: 1
allele frequency: 1.134867674429162e-5
allele num: 88116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+24C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+24C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+24C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+24C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+24C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+24C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+24C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+24C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

8-2964026-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964026
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964026
    reference: chr 8
allele count: 2
allele frequency: 2.269735348858323e-5
allele num: 88116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+24C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+24C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+24C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+24C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+24C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+24C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+24C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+24C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15444
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

8-2964033-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964033
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964033
    reference: chr 8
allele count: 2
allele frequency: 2.161741498951555e-5
allele num: 92518
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+17A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+17A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+17A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+17A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+17A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+17A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+17A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+17A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24004
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25396
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

8-2964034-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964034
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964034
    reference: chr 8
allele count: 3
allele frequency: 3.206155819172812e-5
allele num: 93570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+16T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+16T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+16T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+16T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+16T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+16T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+16T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+16T>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ

8-2964036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964036
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964036
    reference: chr 8
allele count: 1
allele frequency: 1.051259408771709e-5
allele num: 95124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+14G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+14G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+14G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+14G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+14G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+14G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+14G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+14G>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27394
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-2964036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964036
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964036
    reference: chr 8
allele count: 8
allele frequency: 8.410075270173668e-5
allele num: 95124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+14G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+14G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+14G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+14G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+14G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+14G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+14G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+14G>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27394
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

8-2964037-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964037
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964037
    reference: chr 8
allele count: 1
allele frequency: 1.028362230312005e-5
allele num: 97242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+13C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+13C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+13C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+13C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+13C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+13C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+13C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+13C>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

8-2964042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964042
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964042
    reference: chr 8
allele count: 1
allele frequency: 9.708926386920135e-6
allele num: 102998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+8C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+8C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+8C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+8C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+8C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+8C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+8C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+8C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 3.25e1
  variant carriers: 0
hgvs: c.6949+8C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

8-2964044-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964044
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964044
    reference: chr 8
allele count: 4
allele frequency: 3.823799327011319e-5
allele num: 104608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6952+6C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6952+6C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.628+6C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6949+6C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6952+6C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5390+6C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6949+6C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6952+6C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35536
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
hgvs: c.6949+6C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

8-2964052-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964052
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964052
    reference: chr 8
allele count: 2
allele frequency: 1.818843215714806e-5
allele num: 109960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6950A>G
  hgvsp: ENSP00000473617.1:p.Glu2317Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6950A>G
  hgvsp: ENSP00000473359.1:p.Glu2317Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6950A>G
  hgvsp: ENSP00000430733.1:p.Glu2317Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6950A>G
  hgvsp: ENSP00000383047.3:p.Glu2317Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6947A>G
  hgvsp: ENSP00000446243.1:p.Glu2316Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5388A>G
  hgvsp: ENSP00000334828.6:p.Glu1797Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.626A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6947A>G
  hgvsp: ENSP00000441462.1:p.Glu2316Gly
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu2316Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

8-2964055-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964055
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964055
    reference: chr 8
allele count: 1
allele frequency: 8.966840623374759e-6
allele num: 111522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5385G>C
  hgvsp: ENSP00000334828.6:p.Cys1796Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6947G>C
  hgvsp: ENSP00000430733.1:p.Cys2316Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6944G>C
  hgvsp: ENSP00000441462.1:p.Cys2315Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.623G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6947G>C
  hgvsp: ENSP00000473617.1:p.Cys2316Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6947G>C
  hgvsp: ENSP00000383047.3:p.Cys2316Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6944G>C
  hgvsp: ENSP00000446243.1:p.Cys2315Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6947G>C
  hgvsp: ENSP00000473359.1:p.Cys2316Ser
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys2315Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP

8-2964057-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964057
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964057
    reference: chr 8
allele count: 1
allele frequency: 8.883834973881526e-6
allele num: 112564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6942A>G
  hgvsp: ENST00000542608.1:c.6942A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.621A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5383A>G
  hgvsp: ENST00000335551.7:c.5383A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6945A>G
  hgvsp: ENST00000602557.1:c.6945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6945A>G
  hgvsp: ENST00000602723.1:c.6945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6945A>G
  hgvsp: ENST00000400186.3:c.6945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6945A>G
  hgvsp: ENST00000520002.1:c.6945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6942A>G
  hgvsp: ENST00000537824.1:c.6942A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40769
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr2314Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

8-2964066-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964066
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964066
    reference: chr 8
allele count: 4
allele frequency: 3.462124359506994e-5
allele num: 115536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5374T>A
  hgvsp: ENST00000335551.7:c.5374T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6933T>A
  hgvsp: ENST00000542608.1:c.6933T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6936T>A
  hgvsp: ENST00000602557.1:c.6936T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6936T>A
  hgvsp: ENST00000520002.1:c.6936T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6936T>A
  hgvsp: ENST00000602723.1:c.6936T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.612T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6936T>A
  hgvsp: ENST00000400186.3:c.6936T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6933T>A
  hgvsp: ENST00000537824.1:c.6933T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42088
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser2311Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

8-2964070-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964070
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964070
    reference: chr 8
allele count: 4
allele frequency: 3.437075735963842e-5
allele num: 116378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6932G>C
  hgvsp: ENSP00000430733.1:p.Gly2311Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6929G>C
  hgvsp: ENSP00000441462.1:p.Gly2310Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6929G>C
  hgvsp: ENSP00000446243.1:p.Gly2310Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6932G>C
  hgvsp: ENSP00000473617.1:p.Gly2311Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.608G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6932G>C
  hgvsp: ENSP00000473359.1:p.Gly2311Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6932G>C
  hgvsp: ENSP00000383047.3:p.Gly2311Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5370G>C
  hgvsp: ENSP00000334828.6:p.Gly1791Ala
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42451
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly2310Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-2964071-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964071
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964071
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 116586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6931G>T
  hgvsp: ENSP00000473617.1:p.Gly2311Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6928G>T
  hgvsp: ENSP00000446243.1:p.Gly2310Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6931G>T
  hgvsp: ENSP00000383047.3:p.Gly2311Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6931G>T
  hgvsp: ENSP00000473359.1:p.Gly2311Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.607G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5369G>T
  hgvsp: ENSP00000334828.6:p.Gly1791Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6931G>T
  hgvsp: ENSP00000430733.1:p.Gly2311Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6928G>T
  hgvsp: ENSP00000441462.1:p.Gly2310Cys
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly2310Cys
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/8-2964072-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964072
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964072
    reference: chr 8
allele count: 1
allele frequency: 8.566778034781118e-6
allele num: 116730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6930G>T
  hgvsp: ENSP00000383047.3:p.Glu2310Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5368G>T
  hgvsp: ENSP00000334828.6:p.Glu1790Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6930G>T
  hgvsp: ENSP00000473617.1:p.Glu2310Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6927G>T
  hgvsp: ENSP00000441462.1:p.Glu2309Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6930G>T
  hgvsp: ENSP00000430733.1:p.Glu2310Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.606G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6927G>T
  hgvsp: ENSP00000446243.1:p.Glu2309Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6930G>T
  hgvsp: ENSP00000473359.1:p.Glu2310Asp
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu2309Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

8-2964085-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964085
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964085
    reference: chr 8
allele count: 1
allele frequency: 8.468691248454463e-6
allele num: 118082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.593A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6917A>G
  hgvsp: ENSP00000473359.1:p.Gln2306Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6917A>G
  hgvsp: ENSP00000383047.3:p.Gln2306Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6914A>G
  hgvsp: ENSP00000446243.1:p.Gln2305Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6917A>G
  hgvsp: ENSP00000473617.1:p.Gln2306Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5355A>G
  hgvsp: ENSP00000334828.6:p.Gln1786Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6914A>G
  hgvsp: ENSP00000441462.1:p.Gln2305Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6917A>G
  hgvsp: ENSP00000430733.1:p.Gln2306Arg
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln2305Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

8-2964092-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964092
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964092
    reference: chr 8
allele count: 1
allele frequency: 8.448371998715848e-6
allele num: 118366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6910A>T
  hgvsp: ENSP00000473617.1:p.Ser2304Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6910A>T
  hgvsp: ENSP00000383047.3:p.Ser2304Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6907A>T
  hgvsp: ENSP00000446243.1:p.Ser2303Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.586A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6910A>T
  hgvsp: ENSP00000473359.1:p.Ser2304Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6910A>T
  hgvsp: ENSP00000430733.1:p.Ser2304Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5348A>T
  hgvsp: ENSP00000334828.6:p.Ser1784Cys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6907A>T
  hgvsp: ENSP00000441462.1:p.Ser2303Cys
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser2303Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS

8-2964093-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964093
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964093
    reference: chr 8
allele count: 1
allele frequency: 8.449514152936206e-6
allele num: 118350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6909C>G
  hgvsp: ENST00000602723.1:c.6909C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6906C>G
  hgvsp: ENST00000537824.1:c.6906C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5347C>G
  hgvsp: ENST00000335551.7:c.5347C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6909C>G
  hgvsp: ENST00000520002.1:c.6909C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6906C>G
  hgvsp: ENST00000542608.1:c.6906C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6909C>G
  hgvsp: ENST00000602557.1:c.6909C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6909C>G
  hgvsp: ENST00000400186.3:c.6909C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.585C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu2302Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

8-2964099-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964099
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964099
    reference: chr 8
allele count: 1
allele frequency: 8.444947387977773e-6
allele num: 118414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6903C>G
  hgvsp: ENSP00000383047.3:p.Cys2301Trp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6900C>G
  hgvsp: ENSP00000441462.1:p.Cys2300Trp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6903C>G
  hgvsp: ENSP00000473359.1:p.Cys2301Trp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6900C>G
  hgvsp: ENSP00000446243.1:p.Cys2300Trp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6903C>G
  hgvsp: ENSP00000430733.1:p.Cys2301Trp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6903C>G
  hgvsp: ENSP00000473617.1:p.Cys2301Trp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5341C>G
  hgvsp: ENSP00000334828.6:p.Cys1781Trp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.579C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10602
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys2300Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

8-2964105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964105
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964105
    reference: chr 8
allele count: 1
allele frequency: 8.459521191100584e-6
allele num: 118210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6897G>A
  hgvsp: ENST00000602557.1:c.6897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.573G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6897G>A
  hgvsp: ENST00000400186.3:c.6897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6894G>A
  hgvsp: ENST00000542608.1:c.6894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6897G>A
  hgvsp: ENST00000520002.1:c.6897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5335G>A
  hgvsp: ENST00000335551.7:c.5335G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6894G>A
  hgvsp: ENST00000537824.1:c.6894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6897G>A
  hgvsp: ENST00000602723.1:c.6897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu2298Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

8-2964110-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964110
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964110
    reference: chr 8
allele count: 1
allele frequency: 8.472278704080249e-6
allele num: 118032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6892A>T
  hgvsp: ENSP00000383047.3:p.Ile2298Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6892A>T
  hgvsp: ENSP00000430733.1:p.Ile2298Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.568A>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6889A>T
  hgvsp: ENSP00000441462.1:p.Ile2297Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5330A>T
  hgvsp: ENSP00000334828.6:p.Ile1778Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6889A>T
  hgvsp: ENSP00000446243.1:p.Ile2297Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6892A>T
  hgvsp: ENSP00000473617.1:p.Ile2298Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6892A>T
  hgvsp: ENSP00000473359.1:p.Ile2298Phe
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile2297Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

8-2964110-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964110
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964110
    reference: chr 8
allele count: 1
allele frequency: 8.472278704080249e-6
allele num: 118032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6892A>G
  hgvsp: ENSP00000473617.1:p.Ile2298Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6892A>G
  hgvsp: ENSP00000430733.1:p.Ile2298Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6892A>G
  hgvsp: ENSP00000473359.1:p.Ile2298Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5330A>G
  hgvsp: ENSP00000334828.6:p.Ile1778Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6889A>G
  hgvsp: ENSP00000446243.1:p.Ile2297Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6892A>G
  hgvsp: ENSP00000383047.3:p.Ile2298Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6889A>G
  hgvsp: ENSP00000441462.1:p.Ile2297Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.568A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41622
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile2297Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

8-2964113-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964113
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964113
    reference: chr 8
allele count: 2
allele frequency: 1.697965836927361e-5
allele num: 117788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5327G>A
  hgvsp: ENSP00000334828.6:p.Asp1777Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6889G>A
  hgvsp: ENSP00000383047.3:p.Asp2297Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6889G>A
  hgvsp: ENSP00000473359.1:p.Asp2297Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.565G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6886G>A
  hgvsp: ENSP00000441462.1:p.Asp2296Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6889G>A
  hgvsp: ENSP00000430733.1:p.Asp2297Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6886G>A
  hgvsp: ENSP00000446243.1:p.Asp2296Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6889G>A
  hgvsp: ENSP00000473617.1:p.Asp2297Asn
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41213
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48097
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp2296Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

8-2964114-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964114
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964114
    reference: chr 8
allele count: 1
allele frequency: 8.491126772522713e-6
allele num: 117770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.564C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6888C>A
  hgvsp: ENST00000602557.1:c.6888C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6888C>A
  hgvsp: ENST00000602723.1:c.6888C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5326C>A
  hgvsp: ENST00000335551.7:c.5326C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6888C>A
  hgvsp: ENST00000400186.3:c.6888C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6885C>A
  hgvsp: ENST00000537824.1:c.6885C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6888C>A
  hgvsp: ENST00000520002.1:c.6888C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6885C>A
  hgvsp: ENST00000542608.1:c.6885C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10815
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr2295Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-2964115-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964115
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964115
    reference: chr 8
allele count: 1
allele frequency: 8.49516625040352e-6
allele num: 117714
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6884C>G
  hgvsp: ENSP00000441462.1:p.Thr2295Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6887C>G
  hgvsp: ENSP00000430733.1:p.Thr2296Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6884C>G
  hgvsp: ENSP00000446243.1:p.Thr2295Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6887C>G
  hgvsp: ENSP00000473617.1:p.Thr2296Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5325C>G
  hgvsp: ENSP00000334828.6:p.Thr1776Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6887C>G
  hgvsp: ENSP00000383047.3:p.Thr2296Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6887C>G
  hgvsp: ENSP00000473359.1:p.Thr2296Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.563C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr2295Ser
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

8-2964118-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964118
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964118
    reference: chr 8
allele count: 3
allele frequency: 2.55458292176164e-5
allele num: 117436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6884G>C
  hgvsp: ENSP00000473359.1:p.Gly2295Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6884G>C
  hgvsp: ENSP00000473617.1:p.Gly2295Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6884G>C
  hgvsp: ENSP00000430733.1:p.Gly2295Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6881G>C
  hgvsp: ENSP00000441462.1:p.Gly2294Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5322G>C
  hgvsp: ENSP00000334828.6:p.Gly1775Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6884G>C
  hgvsp: ENSP00000383047.3:p.Gly2295Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6881G>C
  hgvsp: ENSP00000446243.1:p.Gly2294Ala
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.560G>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly2294Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

8-2964121-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964121
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964121
    reference: chr 8
allele count: 1
allele frequency: 8.559152301556053e-6
allele num: 116834
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6881T>A
  hgvsp: ENSP00000430733.1:p.Val2294Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6881T>A
  hgvsp: ENSP00000473359.1:p.Val2294Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6881T>A
  hgvsp: ENSP00000473617.1:p.Val2294Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6878T>A
  hgvsp: ENSP00000446243.1:p.Val2293Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6878T>A
  hgvsp: ENSP00000441462.1:p.Val2293Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.557T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5319T>A
  hgvsp: ENSP00000334828.6:p.Val1774Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6881T>A
  hgvsp: ENSP00000383047.3:p.Val2294Glu
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val2293Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/8-2964122-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964122
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964122
    reference: chr 8
allele count: 1
allele frequency: 8.559298822240482e-6
allele num: 116832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.556G>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5318G>T
  hgvsp: ENSP00000334828.6:p.Val1774Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6877G>T
  hgvsp: ENSP00000446243.1:p.Val2293Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6880G>T
  hgvsp: ENSP00000473617.1:p.Val2294Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6877G>T
  hgvsp: ENSP00000441462.1:p.Val2293Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6880G>T
  hgvsp: ENSP00000430733.1:p.Val2294Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6880G>T
  hgvsp: ENSP00000473359.1:p.Val2294Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6880G>T
  hgvsp: ENSP00000383047.3:p.Val2294Leu
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46765
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val2293Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

8-2964135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964135
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964135
    reference: chr 8
allele count: 7
allele frequency: 6.091617933723197e-5
allele num: 114912
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6864C>T
  hgvsp: ENST00000537824.1:c.6864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6867C>T
  hgvsp: ENST00000400186.3:c.6867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6867C>T
  hgvsp: ENST00000602723.1:c.6867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6867C>T
  hgvsp: ENST00000520002.1:c.6867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6867C>T
  hgvsp: ENST00000602557.1:c.6867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.543C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6864C>T
  hgvsp: ENST00000542608.1:c.6864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5305C>T
  hgvsp: ENST00000335551.7:c.5305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37494
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45091
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro2288Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

8-2964138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964138
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964138
    reference: chr 8
allele count: 3
allele frequency: 2.637084439443751e-5
allele num: 113762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6861C>T
  hgvsp: ENST00000542608.1:c.6861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6861C>T
  hgvsp: ENST00000537824.1:c.6861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6864C>T
  hgvsp: ENST00000602557.1:c.6864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6864C>T
  hgvsp: ENST00000602723.1:c.6864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6864C>T
  hgvsp: ENST00000400186.3:c.6864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5302C>T
  hgvsp: ENST00000335551.7:c.5302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6864C>T
  hgvsp: ENST00000520002.1:c.6864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.540C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6089
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43099
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His2287His
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

8-2964138-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964138
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964138
    reference: chr 8
allele count: 7
allele frequency: 6.153197025368752e-5
allele num: 113762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6864C>G
  hgvsp: ENSP00000473359.1:p.His2288Gln
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6864C>G
  hgvsp: ENSP00000383047.3:p.His2288Gln
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6861C>G
  hgvsp: ENSP00000446243.1:p.His2287Gln
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.540C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6864C>G
  hgvsp: ENSP00000473617.1:p.His2288Gln
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6864C>G
  hgvsp: ENSP00000430733.1:p.His2288Gln
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5302C>G
  hgvsp: ENSP00000334828.6:p.His1768Gln
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6861C>G
  hgvsp: ENSP00000441462.1:p.His2287Gln
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36085
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43099
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6089
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His2287Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

8-2964150-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964150
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964150
    reference: chr 8
allele count: 1
allele frequency: 9.092066262978925e-6
allele num: 109986
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6849G>A
  hgvsp: ENST00000537824.1:c.6849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6852G>A
  hgvsp: ENST00000602723.1:c.6852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.528G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6852G>A
  hgvsp: ENST00000400186.3:c.6852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6852G>A
  hgvsp: ENST00000602557.1:c.6852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6849G>A
  hgvsp: ENST00000542608.1:c.6849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6852G>A
  hgvsp: ENST00000520002.1:c.6852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5290G>A
  hgvsp: ENST00000335551.7:c.5290G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys2283Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

8-2964155-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964155
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964155
    reference: chr 8
allele count: 1
allele frequency: 9.279020135473694e-6
allele num: 107770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5285G>C
  hgvsp: ENSP00000334828.6:p.Val1763Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6847G>C
  hgvsp: ENSP00000430733.1:p.Val2283Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6847G>C
  hgvsp: ENSP00000383047.3:p.Val2283Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6844G>C
  hgvsp: ENSP00000446243.1:p.Val2282Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6847G>C
  hgvsp: ENSP00000473359.1:p.Val2283Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.523G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6847G>C
  hgvsp: ENSP00000473617.1:p.Val2283Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6844G>C
  hgvsp: ENSP00000441462.1:p.Val2282Leu
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12109
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val2282Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

8-2964161-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964161
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964161
    reference: chr 8
allele count: 1
allele frequency: 9.501007106753316e-6
allele num: 105252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6841G>C
  hgvsp: ENSP00000473617.1:p.Asp2281His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6841G>C
  hgvsp: ENSP00000430733.1:p.Asp2281His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6838G>C
  hgvsp: ENSP00000446243.1:p.Asp2280His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6838G>C
  hgvsp: ENSP00000441462.1:p.Asp2280His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6841G>C
  hgvsp: ENSP00000383047.3:p.Asp2281His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6841G>C
  hgvsp: ENSP00000473359.1:p.Asp2281His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5279G>C
  hgvsp: ENSP00000334828.6:p.Asp1761His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.517G>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24949
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp2280His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

8-2964170-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964170
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964170
    reference: chr 8
allele count: 1
allele frequency: 9.889631710115115e-6
allele num: 101116
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.508C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-7C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-7C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
hgvs: c.6836-7C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

8-2964173-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964173
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964173
    reference: chr 8
allele count: 1
allele frequency: 9.986817401030639e-6
allele num: 100132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-10A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-10A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.505A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-10A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-10A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-10A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-10A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-10A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16462
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4419
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

8-2964176-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964176
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964176
    reference: chr 8
allele count: 1
allele frequency: 1.011020119300374e-5
allele num: 98910
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-13T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-13T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-13T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-13T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.502T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-13T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-13T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-13T>C
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20396
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4552
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

8-2964188-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964188
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964187
    reference: chr 8
allele count: 1
allele frequency: 1.063264221158958e-5
allele num: 94050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.489delC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-26delC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-26delC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-26delC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-26delC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-26delC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-26delC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-26delC
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6779
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: AG
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

8-2964189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964189
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964189
    reference: chr 8
allele count: 1
allele frequency: 1.069038506767014e-5
allele num: 93542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-26C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-26C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-26C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-26C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-26C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.489C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-26C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-26C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23016
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3651
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

8-2964194-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964194
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964194
    reference: chr 8
allele count: 2
allele frequency: 2.199348992698161e-5
allele num: 90936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-31A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-31A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-31A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-31A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-31A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.484A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-31A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-31A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7417
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

8-2964196-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964196
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964196
    reference: chr 8
allele count: 1
allele frequency: 1.112718370980305e-5
allele num: 89870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.482C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-33C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-33C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4347
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

8-2964200-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964200
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964200
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 86098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.478C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-37C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-37C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14402
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19506
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6002
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

8-2964200-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964200
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964200
    reference: chr 8
allele count: 1
allele frequency: 1.161467165323236e-5
allele num: 86098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.478C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-37C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-37C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21668
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7643
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6002
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ

8-2964204-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964204
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964204
    reference: chr 8
allele count: 3
allele frequency: 3.553744462081547e-5
allele num: 84418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-41G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-41G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-41G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-41G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.474G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-41G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-41G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-41G>A
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21118
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10431
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

8-2964206-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964206
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964206
    reference: chr 8
allele count: 12987
allele frequency: 1.557418333573176e-1
allele num: 83388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-43A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.472A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-43A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-43A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-43A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-43A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-43A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-43A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.25e1
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 2.25e1
  variant carriers: 1330
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.5e0
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 15440
  bin: 7.5e0
  variant carriers: 2621
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 1.75e1
  variant carriers: 3239
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 2.75e1
  variant carriers: 627
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 20909
  bin: 1.25e1
  variant carriers: 5086
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 5574
  bin: 3.25e1
  variant carriers: 207
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 6.25e1
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 8.25e1
  variant carriers: 250
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.25e1
  variant carriers: 241
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 366
genotype quality: GenotypeQuality
  all individuals: 4514
  bin: 2.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 4.25e1
  variant carriers: 132
num of homozygotes: 1049
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-2964207-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964207
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964207
    reference: chr 8
allele count: 1
allele frequency: 1.227204673195395e-5
allele num: 81486
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.471A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-44A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-44A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20841
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7563
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5870
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

8-2964208-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964208
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964208
    reference: chr 8
allele count: 3
allele frequency: 3.69285309830375e-5
allele num: 81238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-45G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-45G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-45G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-45G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-45G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.470G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-45G>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-45G>C
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16701
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20849
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4601
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5850
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

8-2964210-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964210
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964210
    reference: chr 8
allele count: 1
allele frequency: 1.239126663527546e-5
allele num: 80702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-47C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-47C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-47C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.468C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-47C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-47C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-47C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-47C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

8-2964212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964212
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964212
    reference: chr 8
allele count: 1
allele frequency: 1.321353065539112e-5
allele num: 75680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-49C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.466C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-49C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-49C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-49C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-49C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-49C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-49C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20280
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

8-2964212-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2964212
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2964212
    reference: chr 8
allele count: 1
allele frequency: 1.321353065539112e-5
allele num: 75680
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6836-49C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6839-49C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183117
  ensembl transcript: ENST00000523062
  gene symbol: CSMD1
  hgvsc: ENST00000523062.1:n.466C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6839-49C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5277-49C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6839-49C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6836-49C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6839-49C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17366
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4628
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

8-2965190-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965190
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965189
    reference: chr 8
allele count: 2
allele frequency: 1.672828250723498e-5
allele num: 119558
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+49delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+49delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+49delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+49delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+49delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+49delT
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+49delT
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: TA
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-2965193-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965193
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965193
    reference: chr 8
allele count: 2
allele frequency: 1.668084538524412e-5
allele num: 119898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+47T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+47T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+47T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+47T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+47T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+47T>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+47T>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

8-2965197-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965197
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965197
    reference: chr 8
allele count: 5
allele frequency: 4.169098640873843e-5
allele num: 119930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+43T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+43T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+43T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+43T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+43T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+43T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+43T>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

8-2965198-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965198
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965198
    reference: chr 8
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+42A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+42A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+42A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+42A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+42A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+42A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+42A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36193
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

8-2965198-TGTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965198
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965195
    reference: chr 8
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+39_6838+41delGAC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+39_6835+41delGAC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+39_6838+41delGAC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+39_6838+41delGAC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+39_5276+41delGAC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+39_6838+41delGAC
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+39_6835+41delGAC
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36193
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: TGTC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

8-2965201-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965201
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965201
    reference: chr 8
allele count: 1
allele frequency: 8.340700952508049e-6
allele num: 119894
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+39G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+39G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+39G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+39G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+39G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+39G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+39G>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

8-2965202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965202
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965202
    reference: chr 8
allele count: 1
allele frequency: 8.335695113615524e-6
allele num: 119966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+38C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+38C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+38C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+38C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+38C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+38C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+38C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8561
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

8-2965202-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965202
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965202
    reference: chr 8
allele count: 1
allele frequency: 8.335695113615524e-6
allele num: 119966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+38C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+38C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+38C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+38C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+38C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+38C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+38C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

8-2965204-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965204
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965204
    reference: chr 8
allele count: 1
allele frequency: 8.334583520861462e-6
allele num: 119982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+36C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+36C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+36C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+36C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+36C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+36C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+36C>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

8-2965209-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965209
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965209
    reference: chr 8
allele count: 116456
allele frequency: 9.662153192619143e-1
allele num: 120528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+31T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+31T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+31T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+31T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+31T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+31T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+31T>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 6.75e1
  variant carriers: 4400
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 6.25e1
  variant carriers: 5361
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 4.25e1
  variant carriers: 4480
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 429
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 5.25e1
  variant carriers: 5947
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 8.75e1
  variant carriers: 1322
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.25e1
  variant carriers: 1612
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 7.25e1
  variant carriers: 3592
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 5.75e1
  variant carriers: 5965
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 9.25e1
  variant carriers: 1020
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 3.25e1
  variant carriers: 2900
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 2.75e1
  variant carriers: 2086
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 9.75e1
  variant carriers: 6743
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
  variant carriers: 991
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 4.75e1
  variant carriers: 5326
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 8.25e1
  variant carriers: 1905
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 7.75e1
  variant carriers: 2575
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 3.75e1
  variant carriers: 3513
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.75e1
  variant carriers: 734
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.25e1
  variant carriers: 431
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 197
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 376
num of homozygotes: 56295
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

8-2965214-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965214
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965214
    reference: chr 8
allele count: 2
allele frequency: 1.65977858553669e-5
allele num: 120498
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+26A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+26A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

8-2965215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2965215
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2965215
    reference: chr 8
allele count: 1
allele frequency: 8.298479718515568e-6
allele num: 120504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.6838+25C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.6838+25C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.6838+25C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.6835+25C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.5276+25C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.6835+25C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.6838+25C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1506
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7350
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 4.230118443316413e-4
allele num: 2364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6642
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.409999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

DP
type: SiteQuality
SIO_000300: 2.53174e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.574e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

QD
type: SiteQuality
SIO_000300: 1.62e1

MQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

GenotypeQuality
all individuals: 1037
bin: 1.25e1
variant carriers: 942

GenotypeQuality
all individuals: 794
bin: 7.5e0
variant carriers: 627

GenotypeQuality
all individuals: 3415
bin: 1.75e1
variant carriers: 3251

GenotypeQuality
all individuals: 578
bin: 7.25e1
variant carriers: 550

GenotypeQuality
all individuals: 2764
bin: 5.25e1
variant carriers: 2706

GenotypeQuality
all individuals: 734
bin: 8.75e1
variant carriers: 724

GenotypeQuality
all individuals: 874
bin: 8.25e1
variant carriers: 858

GenotypeQuality
all individuals: 844
bin: 9.25e1
variant carriers: 830

GenotypeQuality
all individuals: 816
bin: 7.75e1
variant carriers: 792

GenotypeQuality
all individuals: 3755
bin: 4.75e1
variant carriers: 3639

GenotypeQuality
all individuals: 5693
bin: 3.75e1
variant carriers: 5487

GenotypeQuality
all individuals: 6554
bin: 3.25e1
variant carriers: 6267

European (Non-Finnish)
type: Population
allele count: 36655
allele frequency: 8.07094416064823e-1
allele num: 45416
num of homozygotes: 14714

South Asian
type: Population
allele count: 10215
allele frequency: 8.915168441263746e-1
allele num: 11458
num of homozygotes: 4555

African
type: Population
allele count: 4593
allele frequency: 6.377395168008887e-1
allele num: 7202
num of homozygotes: 1445

Latino
type: Population
allele count: 5914
allele frequency: 9.120913016656385e-1
allele num: 6484
num of homozygotes: 2697

East Asian
type: Population
allele count: 5358
allele frequency: 9.640158330334653e-1
allele num: 5558
num of homozygotes: 2584

European (Finnish)
type: Population
allele count: 4128
allele frequency: 8.106834249803614e-1
allele num: 5092
num of homozygotes: 1661

Other
type: Population
allele count: 548
allele frequency: 8.353658536585366e-1
allele num: 656
num of homozygotes: 232

VQSLOD
type: SiteQuality
SIO_000300: 6.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

DP
type: SiteQuality
SIO_000300: 9.59246e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.178e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.58e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

GenotypeQuality
all individuals: 2563
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3938
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3783
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5465
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2708
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6703
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variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8834
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.493e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
SIO_000300: 9.26869e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.009e-1

GenotypeQuality
all individuals: 1264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15314
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47396
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.336898395721925e-4
allele num: 7480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.466e0

MQ
type: SiteQuality
SIO_000300: 5.707e1

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

DP
type: SiteQuality
SIO_000300: 9.6934e5

QD
type: SiteQuality
SIO_000300: 1.382e1

GenotypeQuality
all individuals: 797
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 10158
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 538
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 385
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1079
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5986
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5365
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2953
bin: 9.75e1
variant carriers: 415

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 15480
bin: 2.25e1
variant carriers: 2

Other
type: Population
allele count: 3
allele frequency: 4.587155963302753e-3
allele num: 654
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.326231691078562e-4
allele num: 7510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.796507213363706e-4
allele num: 5268
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 2.800707547169811e-3
allele num: 6784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 207
allele frequency: 4.353861686017163e-3
allele num: 47544
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.727115716753022e-4
allele num: 5790
num of homozygotes: 0

South Asian
type: Population
allele count: 174
allele frequency: 1.488197057817311e-2
allele num: 11692
num of homozygotes: 2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.73e0

DP
type: SiteQuality
SIO_000300: 9.77411e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.493e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.292e0

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15437
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1194
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5960
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.092400401740877e-5
allele num: 47792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11752
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

DP
type: SiteQuality
SIO_000300: 9.82326e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.809e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.74e0

GenotypeQuality
all individuals: 7565
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
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variant carriers: 0

GenotypeQuality
all individuals: 15249
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variant carriers: 0

GenotypeQuality
all individuals: 5056
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
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variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16089
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.126433935792688e-5
allele num: 48468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.451e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

DP
type: SiteQuality
SIO_000300: 1.026854e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.337e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

GenotypeQuality
all individuals: 571
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 7.5e0
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GenotypeQuality
all individuals: 483
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
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variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11920
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.428163381890888e-4
allele num: 7002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48670
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.035208e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

VQSLOD
type: SiteQuality
SIO_000300: -7.779999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.186e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
all individuals: 548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16025
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18654
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
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variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.40805406927626e-4
allele num: 7102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49168
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 7.88e-1

QD
type: SiteQuality
SIO_000300: 1.524e1

DP
type: SiteQuality
SIO_000300: 1.058085e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3860
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18654
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4745
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16025
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 963
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.067686300032541e-5
allele num: 49168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7102
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.524e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.058085e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

FS
type: SiteQuality
SIO_000300: 7.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

GenotypeQuality
all individuals: 14426
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51656
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.605394124257505e-4
allele num: 12458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e0

VQSLOD
type: SiteQuality
SIO_000300: -4.439e-1

FS
type: SiteQuality
SIO_000300: 3.053e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
SIO_000300: 1.415e1

DP
type: SiteQuality
SIO_000300: 1.139884e6

GenotypeQuality
all individuals: 584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.742725880551302e-5
allele num: 52240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

DP
type: SiteQuality
SIO_000300: 1.156379e6

FS
type: SiteQuality
SIO_000300: 3.133e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 546
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.221896383186706e-4
allele num: 8184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 2.737e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

DP
type: SiteQuality
SIO_000300: 1.191383e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

GenotypeQuality
all individuals: 3795
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.581277672359266e-4
allele num: 12648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.129220461474762e-4
allele num: 53134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.268e1

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

DP
type: SiteQuality
SIO_000300: 1.191383e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

FS
type: SiteQuality
SIO_000300: 2.737e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 107
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GenotypeQuality
all individuals: 420
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GenotypeQuality
all individuals: 285
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GenotypeQuality
all individuals: 1554
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variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.839384909686201e-5
allele num: 54366
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 3.587e0

VQSLOD
type: SiteQuality
SIO_000300: -1.539e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

DP
type: SiteQuality
SIO_000300: 1.219584e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 219
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.155001155001155e-4
allele num: 8658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.290886e6

QD
type: SiteQuality
SIO_000300: 1.032e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.014e0

FS
type: SiteQuality
SIO_000300: 1.512e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.278e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.846970215679562e-5
allele num: 58420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.004e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.524e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 1.311211e6

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.498126405196103e-4
allele num: 8006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61314
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.31e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

DP
type: SiteQuality
SIO_000300: 1.372557e6

FS
type: SiteQuality
SIO_000300: 7.361e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.48e-1

GenotypeQuality
all individuals: 720
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 280
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GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 293
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GenotypeQuality
all individuals: 459
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GenotypeQuality
all individuals: 4949
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GenotypeQuality
all individuals: 774
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.878525244187646e-5
allele num: 14538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10430
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

QD
type: SiteQuality
SIO_000300: 1.446e1

VQSLOD
type: SiteQuality
SIO_000300: 6.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.095e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

FS
type: SiteQuality
SIO_000300: 2.198e0

DP
type: SiteQuality
SIO_000300: 1.391804e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62748
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.808278867102397e-5
allele num: 14688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

QD
type: SiteQuality
SIO_000300: 9.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 1.40213e6

MQRankSum
type: SiteQuality
SIO_000300: -8.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 7.501e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64304
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.776689754000478e-4
allele num: 8374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.167e0

DP
type: SiteQuality
SIO_000300: 1.437284e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.611306959133046e-4
allele num: 15318
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

FS
type: SiteQuality
SIO_000300: 1.386e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.447337e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64848
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.705e1

QD
type: SiteQuality
SIO_000300: 7.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
SIO_000300: 1.44942e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54054720236628e-5
allele num: 64912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.67e0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15684
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65588
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.042752867570386e-4
allele num: 9590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 1.468574e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele num: 8548
num of homozygotes: 0

South Asian
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Latino
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African
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521745746720638e-5
allele num: 65714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15730
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520866285436184e-5
allele num: 65752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.685e0

FS
type: SiteQuality
SIO_000300: 2.912e0

VQSLOD
type: SiteQuality
SIO_000300: -1.124e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.06e-1

DP
type: SiteQuality
SIO_000300: 1.474381e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 6.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 818
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 226
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042535446205171e-4
allele num: 9592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.724e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 1.471971e6

VQSLOD
type: SiteQuality
SIO_000300: 9.49e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48743
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52545992616774e-5
allele num: 65554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15658
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 1.172e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.455e0

VQSLOD
type: SiteQuality
SIO_000300: 6.41e-1

DP
type: SiteQuality
SIO_000300: 1.469033e6

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 462
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variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52545992616774e-5
allele num: 65554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.469033e6

QD
type: SiteQuality
SIO_000300: 1.172e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528350909368791e-5
allele num: 65430
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.402868485081316e-5
allele num: 15618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

FS
type: SiteQuality
SIO_000300: 4.883e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 1.467102e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65426
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.887308922858158e-5
allele num: 11252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.409e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

FS
type: SiteQuality
SIO_000300: 1.898e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

DP
type: SiteQuality
SIO_000300: 1.467175e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 7.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529051987767584e-5
allele num: 65400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.227e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.465738e6

QD
type: SiteQuality
SIO_000300: 1.071e1

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.596010662744738e-5
allele num: 65274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
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Latino
type: Population
allele count: 0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 868
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.896e0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.462404e6

QD
type: SiteQuality
SIO_000300: 1.067e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2556
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539598472718315e-5
allele num: 64952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15446
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.867e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.1e-1

DP
type: SiteQuality
SIO_000300: 1.45356e6

FS
type: SiteQuality
SIO_000300: 3.012e0

MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.004e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.453e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 387
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.542257865515114e-4
allele num: 6484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64956
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

DP
type: SiteQuality
SIO_000300: 1.453622e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.904e1

QD
type: SiteQuality
SIO_000300: 1.442e1

GenotypeQuality
all individuals: 4880
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 687
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GenotypeQuality
all individuals: 674
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.068376068376068e-4
allele num: 9360
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.612881893929374e-5
allele num: 15122
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.167583425009168e-5
allele num: 10908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.254691018263698e-5
allele num: 63952
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 1.214e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.427057e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.247e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 175
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10734
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.004543632233062e-4
allele num: 14966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63366
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.405785e6

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

FS
type: SiteQuality
SIO_000300: 5.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.175e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2564
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 420
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GenotypeQuality
all individuals: 670
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.104693368683521e-4
allele num: 63366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.175e1

FS
type: SiteQuality
SIO_000300: 5.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

DP
type: SiteQuality
SIO_000300: 1.405785e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 739
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GenotypeQuality
all individuals: 353
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.255020080321285e-4
allele num: 7968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 4.27e0

DP
type: SiteQuality
SIO_000300: 1.341682e6

QD
type: SiteQuality
SIO_000300: 1.27e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.178e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.664779916095092e-5
allele num: 60068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.65e-1

FS
type: SiteQuality
SIO_000300: 4.715e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.49e-1

DP
type: SiteQuality
SIO_000300: 1.300798e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

GenotypeQuality
all individuals: 246
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.70299727520436e-5
allele num: 58720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8776
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.247877e6

MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.276e0

VQSLOD
type: SiteQuality
SIO_000300: -3.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

QD
type: SiteQuality
SIO_000300: 2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 410
bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.125619090499775e-4
allele num: 8884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56402
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.8e-1

QD
type: SiteQuality
SIO_000300: 3.045e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.005e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19909
bin: 6.25e1
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GenotypeQuality
all individuals: 53
bin: 2.5e0
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GenotypeQuality
all individuals: 333
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GenotypeQuality
all individuals: 520
bin: 4.25e1
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GenotypeQuality
all individuals: 200
bin: 1.25e1
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GenotypeQuality
all individuals: 464
bin: 4.75e1
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GenotypeQuality
all individuals: 281
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20706
bin: 2.25e1
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GenotypeQuality
all individuals: 352
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.790125666821811e-5
allele num: 55862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

QD
type: SiteQuality
SIO_000300: 1.098e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 3.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 1.118884e6

GenotypeQuality
all individuals: 2332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.347708894878706e-3
allele num: 742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13358
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.721e0

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

DP
type: SiteQuality
SIO_000300: 1.090176e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

QD
type: SiteQuality
SIO_000300: 6.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5749
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.822821728034998e-4
allele num: 5486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

DP
type: SiteQuality
SIO_000300: 9.97683e5

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

FS
type: SiteQuality
SIO_000300: 4.441e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQ
type: SiteQuality
SIO_000300: 6.098e1

QD
type: SiteQuality
SIO_000300: 1.299e1

GenotypeQuality
all individuals: 387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5804
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.900142202559646e-5
allele num: 12658
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.9218e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.09e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.752e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 4.319e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 6037
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.933910306845004e-5
allele num: 50840
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

QD
type: SiteQuality
SIO_000300: 1.313e1

DP
type: SiteQuality
SIO_000300: 9.6333e5

FS
type: SiteQuality
SIO_000300: 5.425e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.14e-1

GenotypeQuality
all individuals: 6054
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
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variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 0

GenotypeQuality
all individuals: 1288
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variant carriers: 0

GenotypeQuality
all individuals: 384
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variant carriers: 0

GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
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variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.360914534567229e-4
allele num: 7348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5324
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.283e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.796e0

DP
type: SiteQuality
SIO_000300: 9.56085e5

FS
type: SiteQuality
SIO_000300: 4.075e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

QD
type: SiteQuality
SIO_000300: 2.964e1

GenotypeQuality
all individuals: 2947
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7643
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GenotypeQuality
all individuals: 1492
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GenotypeQuality
all individuals: 208
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GenotypeQuality
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GenotypeQuality
all individuals: 1538
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 5.25e1
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GenotypeQuality
all individuals: 279
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GenotypeQuality
all individuals: 404
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variant carriers: 0

GenotypeQuality
all individuals: 4433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.187e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.344e0

QD
type: SiteQuality
SIO_000300: 8.31e0

VQSLOD
type: SiteQuality
SIO_000300: -2.769e0

DP
type: SiteQuality
SIO_000300: 9.37191e5

GenotypeQuality
all individuals: 404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.75e1
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GenotypeQuality
all individuals: 2557
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 279
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GenotypeQuality
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GenotypeQuality
all individuals: 4708
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GenotypeQuality
all individuals: 19506
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GenotypeQuality
all individuals: 997
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.441668073611346e-5
allele num: 11846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.344e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.187e0

VQSLOD
type: SiteQuality
SIO_000300: -2.769e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

DP
type: SiteQuality
SIO_000300: 9.37191e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 8.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

GenotypeQuality
all individuals: 279
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2559
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1639
bin: 4.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.342762907522517e-5
allele num: 47298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

DP
type: SiteQuality
SIO_000300: 9.29541e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
all individuals: 1197
bin: 4.75e1
variant carriers: 221

GenotypeQuality
all individuals: 2434
bin: 1.75e1
variant carriers: 147

GenotypeQuality
all individuals: 276
bin: 5.75e1
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GenotypeQuality
all individuals: 2120
bin: 1.25e1
variant carriers: 82

GenotypeQuality
all individuals: 503
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variant carriers: 171

GenotypeQuality
all individuals: 1607
bin: 2.5e0
variant carriers: 49

GenotypeQuality
all individuals: 15180
bin: 2.25e1
variant carriers: 216

GenotypeQuality
all individuals: 3123
bin: 7.5e0
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GenotypeQuality
all individuals: 3354
bin: 3.75e1
variant carriers: 208

GenotypeQuality
all individuals: 13064
bin: 9.75e1
variant carriers: 11355

GenotypeQuality
all individuals: 801
bin: 6.75e1
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GenotypeQuality
all individuals: 582
bin: 9.25e1
variant carriers: 388

African
type: Population
allele count: 1540
allele frequency: 2.080518778708457e-1
allele num: 7402
num of homozygotes: 150

Latino
type: Population
allele count: 627
allele frequency: 9.726962457337884e-2
allele num: 6446
num of homozygotes: 31

European (Non-Finnish)
type: Population
allele count: 8662
allele frequency: 1.858399485089037e-1
allele num: 46610
num of homozygotes: 720

Other
type: Population
allele count: 99
allele frequency: 1.490963855421687e-1
allele num: 664
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 968
allele frequency: 1.919111816019033e-1
allele num: 5044
num of homozygotes: 81

East Asian
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allele count: 2
allele frequency: 3.611412062116288e-4
allele num: 5538
num of homozygotes: 0

South Asian
type: Population
allele count: 1089
allele frequency: 9.320438206093803e-2
allele num: 11684
num of homozygotes: 60

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: 6.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.41095e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

QD
type: SiteQuality
SIO_000300: 1.82e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4960
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45440
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.599488163787588e-4
allele num: 6252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

BaseQRankSum
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SIO_000300: -1.092e0

DP
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SIO_000300: 9.14767e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.499e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
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SIO_000300: -1.855e0

VQSLOD
type: SiteQuality
SIO_000300: -7.428e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4942
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7236
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.623294858342078e-4
allele num: 11436
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.14284e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

VQSLOD
type: SiteQuality
SIO_000300: -5.594e-1

QD
type: SiteQuality
SIO_000300: 2.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5368
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.630789302022179e-4
allele num: 6132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.12052e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

FS
type: SiteQuality
SIO_000300: 3.082e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

QD
type: SiteQuality
SIO_000300: 1.765e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.06e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 3857
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1567
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.201324990798675e-5
allele num: 10868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

DP
type: SiteQuality
SIO_000300: 9.11135e5

QD
type: SiteQuality
SIO_000300: 1.602e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 555
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4742
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 10868
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.025111381125962e-4
allele num: 4938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.11135e5

QD
type: SiteQuality
SIO_000300: 1.602e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023122570083896e-4
allele num: 9774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
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South Asian
type: Population
allele count: 1
allele frequency: 6.313928526329082e-5
allele num: 15838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.172e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.047e0

DP
type: SiteQuality
SIO_000300: 2.833049e6

QD
type: SiteQuality
SIO_000300: 2.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.181e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 890
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South Asian
type: Population
allele count: 2
allele frequency: 1.24890720619458e-4
allele num: 16014
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African
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.835909e6

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.997e1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 7.523775129408932e-5
allele num: 66456
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East Asian
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African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
type: Population
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allele num: 11544
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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DP
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.824e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

East Asian
type: Population
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allele num: 8620
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.836e1

VQSLOD
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DP
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SIO_000300: 2.840415e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.549e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16028
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

DP
type: SiteQuality
SIO_000300: 2.840415e6

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

QD
type: SiteQuality
SIO_000300: 1.549e1

MQ
type: SiteQuality
SIO_000300: 5.836e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 566
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36197
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 328
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4469
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021867974657674e-4
allele num: 9786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16002
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 6.071e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.19e-1

QD
type: SiteQuality
SIO_000300: 2.892e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.587e0

VQSLOD
type: SiteQuality
SIO_000300: -2.489e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 2.844507e6

GenotypeQuality
all individuals: 4695
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36214
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2009
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.847158e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.42e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36214
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4695
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16026
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.301e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.42e-2

DP
type: SiteQuality
SIO_000300: 2.847158e6

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1864
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.831e1

VQSLOD
type: SiteQuality
SIO_000300: -2.061e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.850028e6

QD
type: SiteQuality
SIO_000300: 8.81e0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 107

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 228

GenotypeQuality
all individuals: 798
bin: 8.25e1
variant carriers: 790

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 446

GenotypeQuality
all individuals: 328
bin: 4.75e1
variant carriers: 328

GenotypeQuality
all individuals: 580
bin: 6.25e1
variant carriers: 558

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 998

GenotypeQuality
all individuals: 627
bin: 6.75e1
variant carriers: 621

GenotypeQuality
all individuals: 54256
bin: 9.75e1
variant carriers: 54216

European (Non-Finnish)
type: Population
allele count: 64719
allele frequency: 9.714067002881844e-1
allele num: 66624
num of homozygotes: 31446

African
type: Population
allele count: 8980
allele frequency: 9.165135741988161e-1
allele num: 9798
num of homozygotes: 4113

Other
type: Population
allele count: 863
allele frequency: 9.653243847874721e-1
allele num: 894
num of homozygotes: 420

East Asian
type: Population
allele count: 8299
allele frequency: 9.62091351727336e-1
allele num: 8626
num of homozygotes: 3994

European (Finnish)
type: Population
allele count: 6519
allele frequency: 9.856365285757485e-1
allele num: 6614
num of homozygotes: 3212

Latino
type: Population
allele count: 11440
allele frequency: 9.889349930843707e-1
allele num: 11568
num of homozygotes: 5657

South Asian
type: Population
allele count: 15636
allele frequency: 9.531821506949525e-1
allele num: 16404
num of homozygotes: 7453

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 3.890924e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.43e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

QD
type: SiteQuality
SIO_000300: 2.991e1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 8.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

GenotypeQuality
all individuals: 1210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50751
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001831116981359e-5
allele num: 66626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.867365e6

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.28e-2

FS
type: SiteQuality
SIO_000300: 5.764e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

QD
type: SiteQuality
SIO_000300: 1.519e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0