5-82816272-CAGA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816272
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816269
    reference: chr 5
allele count: 10
allele frequency: 8.307717869901138e-5
allele num: 120370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2012_2014delAAG
  hgvsp: ENSP00000425959.2:p.Glu671del
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2156_2158delAAG
  hgvsp: ENSP00000265077.3:p.Glu719del
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2156_2158delAAG
  hgvsp: ENSP00000342768.4:p.Glu719del
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8066_295+8068delAAG
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8066_1042+8068delAAG
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8066_1042+8068delAAG
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8066_1042+8068delAAG
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12549
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29630
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu719del
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: CAGA
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

5-82816281-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816281
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816281
    reference: chr 5
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8066A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2156A>G
  hgvsp: ENSP00000265077.3:p.Glu719Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8066A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2012A>G
  hgvsp: ENSP00000425959.2:p.Glu671Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2156A>G
  hgvsp: ENSP00000342768.4:p.Glu719Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8066A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8066A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29741
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu719Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

5-82816283-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816283
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816283
    reference: chr 5
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8068G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8068G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2158G>A
  hgvsp: ENSP00000265077.3:p.Val720Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8068G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2158G>A
  hgvsp: ENSP00000342768.4:p.Val720Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2014G>A
  hgvsp: ENSP00000425959.2:p.Val672Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8068G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6251
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val720Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

5-82816284-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816284
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816284
    reference: chr 5
allele count: 241
allele frequency: 2.000796997974297e-3
allele num: 120452
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2159T>C
  hgvsp: ENSP00000265077.3:p.Val720Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8069T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8069T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8069T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2015T>C
  hgvsp: ENSP00000425959.2:p.Val672Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8069T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2159T>C
  hgvsp: ENSP00000342768.4:p.Val720Ala
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12524
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 20414
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 14405
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 4314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val720Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

5-82816286-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816286
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816286
    reference: chr 5
allele count: 1
allele frequency: 8.299581701082266e-6
allele num: 120488
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2017T>G
  hgvsp: ENSP00000425959.2:p.Phe673Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8071T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8071T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8071T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2161T>G
  hgvsp: ENSP00000265077.3:p.Phe721Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2161T>G
  hgvsp: ENSP00000342768.4:p.Phe721Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8071T>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20514
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29767
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9285
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe721Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

5-82816291-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816291
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816291
    reference: chr 5
allele count: 1
allele frequency: 8.295588406085643e-6
allele num: 120546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2022T>C
  hgvsp: ENST00000512590.2:c.2022T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8076T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8076T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2166T>C
  hgvsp: ENST00000265077.3:c.2166T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2166T>C
  hgvsp: ENST00000342785.4:c.2166T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8076T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8076T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser722Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

5-82816292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816292
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816292
    reference: chr 5
allele count: 1
allele frequency: 8.296276631047985e-6
allele num: 120536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8077G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2023G>A
  hgvsp: ENSP00000425959.2:p.Gly675Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2167G>A
  hgvsp: ENSP00000342768.4:p.Gly723Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8077G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2167G>A
  hgvsp: ENSP00000265077.3:p.Gly723Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8077G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8077G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6195
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly723Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-82816293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816293
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816293
    reference: chr 5
allele count: 3
allele frequency: 2.488387524883875e-5
allele num: 120560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8078G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2024G>A
  hgvsp: ENSP00000425959.2:p.Gly675Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8078G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2168G>A
  hgvsp: ENSP00000342768.4:p.Gly723Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2168G>A
  hgvsp: ENSP00000265077.3:p.Gly723Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8078G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8078G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20531
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6197
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly723Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

5-82816305-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816305
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816305
    reference: chr 5
allele count: 3
allele frequency: 2.486778626966628e-5
allele num: 120638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8090C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2180C>G
  hgvsp: ENSP00000265077.3:p.Ser727Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2180C>G
  hgvsp: ENSP00000342768.4:p.Ser727Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8090C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8090C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2036C>G
  hgvsp: ENSP00000425959.2:p.Ser679Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8090C>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12573
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6201
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Ser727Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

5-82816305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816305
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816305
    reference: chr 5
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8090C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8090C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8090C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2036C>T
  hgvsp: ENSP00000425959.2:p.Ser679Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2180C>T
  hgvsp: ENSP00000265077.3:p.Ser727Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2180C>T
  hgvsp: ENSP00000342768.4:p.Ser727Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8090C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6201
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser727Phe
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

5-82816313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816313
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816313
    reference: chr 5
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2188C>T
  hgvsp: ENSP00000342768.4:p.Leu730Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2044C>T
  hgvsp: ENSP00000425959.2:p.Leu682Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8098C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8098C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8098C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2188C>T
  hgvsp: ENSP00000265077.3:p.Leu730Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8098C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4329
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6194
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu730Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

5-82816321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816321
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816321
    reference: chr 5
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8106G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2196G>A
  hgvsp: ENST00000265077.3:c.2196G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8106G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2052G>A
  hgvsp: ENST00000512590.2:c.2052G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2196G>A
  hgvsp: ENST00000342785.4:c.2196G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8106G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8106G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6189
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu732Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

5-82816331-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816331
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816331
    reference: chr 5
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2206G>A
  hgvsp: ENSP00000342768.4:p.Val736Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8116G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8116G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8116G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2062G>A
  hgvsp: ENSP00000425959.2:p.Val688Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8116G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2206G>A
  hgvsp: ENSP00000265077.3:p.Val736Ile
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3034
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6183
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val736Ile
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

5-82816332-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816332
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816332
    reference: chr 5
allele count: 2
allele frequency: 1.655683963045134e-5
allele num: 120796
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2207T>C
  hgvsp: ENSP00000265077.3:p.Val736Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2207T>C
  hgvsp: ENSP00000342768.4:p.Val736Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2063T>C
  hgvsp: ENSP00000425959.2:p.Val688Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8117T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8117T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8117T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8117T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14431
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val736Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

5-82816336-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816336
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816336
    reference: chr 5
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8121A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2211A>G
  hgvsp: ENST00000265077.3:c.2211A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8121A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8121A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2211A>G
  hgvsp: ENST00000342785.4:c.2211A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2067A>G
  hgvsp: ENST00000512590.2:c.2067A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8121A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12526
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6181
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr737Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

5-82816345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816345
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816345
    reference: chr 5
allele count: 37
allele frequency: 3.06149467134441e-4
allele num: 120856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2076T>C
  hgvsp: ENST00000512590.2:c.2076T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8130T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8130T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2220T>C
  hgvsp: ENST00000265077.3:c.2220T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8130T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8130T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2220T>C
  hgvsp: ENST00000342785.4:c.2220T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12492
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20592
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29742
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6206
  bin: 9.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser740Ser
num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/5-82816359-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816359
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816359
    reference: chr 5
allele count: 29
allele frequency: 2.399391051098756e-4
allele num: 120864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8144A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8144A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2090A>C
  hgvsp: ENSP00000425959.2:p.Lys697Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2234A>C
  hgvsp: ENSP00000342768.4:p.Lys745Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8144A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2234A>C
  hgvsp: ENSP00000265077.3:p.Lys745Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8144A>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20616
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12463
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys745Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

5-82816365-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816365
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816365
    reference: chr 5
allele count: 1
allele frequency: 8.269930532583527e-6
allele num: 120920
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2240T>C
  hgvsp: ENSP00000265077.3:p.Phe747Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8150T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8150T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8150T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2240T>C
  hgvsp: ENSP00000342768.4:p.Phe747Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8150T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2096T>C
  hgvsp: ENSP00000425959.2:p.Phe699Ser
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9193
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe747Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-82816368-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816368
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816368
    reference: chr 5
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8153A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8153A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2243A>G
  hgvsp: ENSP00000342768.4:p.Asp748Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2243A>G
  hgvsp: ENSP00000265077.3:p.Asp748Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2099A>G
  hgvsp: ENSP00000425959.2:p.Asp700Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8153A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8153A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp748Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-82816371-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816371
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816371
    reference: chr 5
allele count: 1
allele frequency: 8.268426187759421e-6
allele num: 120942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2102T>C
  hgvsp: ENSP00000425959.2:p.Phe701Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2246T>C
  hgvsp: ENSP00000342768.4:p.Phe749Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8156T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2246T>C
  hgvsp: ENSP00000265077.3:p.Phe749Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8156T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8156T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8156T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe749Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-82816376-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816376
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816376
    reference: chr 5
allele count: 1
allele frequency: 8.267879288962381e-6
allele num: 120950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8161A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8161A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2251A>G
  hgvsp: ENSP00000265077.3:p.Thr751Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2107A>G
  hgvsp: ENSP00000425959.2:p.Thr703Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8161A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2251A>G
  hgvsp: ENSP00000342768.4:p.Thr751Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8161A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6156
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr751Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

5-82816377-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816377
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816377
    reference: chr 5
allele count: 1
allele frequency: 8.267879288962381e-6
allele num: 120950
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2252C>T
  hgvsp: ENSP00000265077.3:p.Thr751Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8162C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2252C>T
  hgvsp: ENSP00000342768.4:p.Thr751Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8162C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8162C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2108C>T
  hgvsp: ENSP00000425959.2:p.Thr703Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8162C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr751Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

5-82816382-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816382
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816382
    reference: chr 5
allele count: 1
allele frequency: 8.265965712774223e-6
allele num: 120978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2113A>G
  hgvsp: ENSP00000425959.2:p.Ile705Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8167A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8167A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8167A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2257A>G
  hgvsp: ENSP00000265077.3:p.Ile753Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8167A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2257A>G
  hgvsp: ENSP00000342768.4:p.Ile753Val
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3626
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30443
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile753Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

5-82816382-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816382
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816382
    reference: chr 5
allele count: 1
allele frequency: 8.265965712774223e-6
allele num: 120978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8167A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8167A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2257A>T
  hgvsp: ENSP00000265077.3:p.Ile753Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2113A>T
  hgvsp: ENSP00000425959.2:p.Ile705Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8167A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2257A>T
  hgvsp: ENSP00000342768.4:p.Ile753Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8167A>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile753Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-82816383-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816383
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816383
    reference: chr 5
allele count: 2
allele frequency: 1.653220473482343e-5
allele num: 120976
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2258T>C
  hgvsp: ENSP00000265077.3:p.Ile753Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2258T>C
  hgvsp: ENSP00000342768.4:p.Ile753Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2114T>C
  hgvsp: ENSP00000425959.2:p.Ile705Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8168T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8168T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8168T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8168T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6155
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile753Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-82816387-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816387
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816387
    reference: chr 5
allele count: 20
allele frequency: 1.653029175964956e-4
allele num: 120990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2262A>T
  hgvsp: ENST00000342785.4:c.2262A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8172A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8172A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8172A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2118A>T
  hgvsp: ENST00000512590.2:c.2118A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8172A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2262A>T
  hgvsp: ENST00000265077.3:c.2262A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12427
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20766
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr754Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/5-82816403-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816403
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816403
    reference: chr 5
allele count: 2
allele frequency: 1.652592090694254e-5
allele num: 121022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8188C>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2278C>A
  hgvsp: ENSP00000342768.4:p.Pro760Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2134C>A
  hgvsp: ENSP00000425959.2:p.Pro712Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8188C>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8188C>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8188C>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2278C>A
  hgvsp: ENSP00000265077.3:p.Pro760Thr
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro760Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-82816421-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816421
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816421
    reference: chr 5
allele count: 2
allele frequency: 1.651664051531918e-5
allele num: 121090
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2296A>G
  hgvsp: ENSP00000265077.3:p.Met766Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2152A>G
  hgvsp: ENSP00000425959.2:p.Met718Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8206A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2296A>G
  hgvsp: ENSP00000342768.4:p.Met766Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8206A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8206A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8206A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met766Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

5-82816437-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816437
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816437
    reference: chr 5
allele count: 2
allele frequency: 1.651009592365732e-5
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8222C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2168C>T
  hgvsp: ENSP00000425959.2:p.Thr723Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2312C>T
  hgvsp: ENSP00000265077.3:p.Thr771Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2312C>T
  hgvsp: ENSP00000342768.4:p.Thr771Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8222C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8222C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8222C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6148
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr771Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

5-82816439-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816439
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816439
    reference: chr 5
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2314G>C
  hgvsp: ENSP00000342768.4:p.Ala772Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2314G>C
  hgvsp: ENSP00000265077.3:p.Ala772Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8224G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2170G>C
  hgvsp: ENSP00000425959.2:p.Ala724Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8224G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8224G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8224G>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala772Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

5-82816440-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816440
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816440
    reference: chr 5
allele count: 36
allele frequency: 2.97093435885586e-4
allele num: 121174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8225C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2315C>G
  hgvsp: ENSP00000265077.3:p.Ala772Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2171C>G
  hgvsp: ENSP00000425959.2:p.Ala724Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8225C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8225C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8225C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2315C>G
  hgvsp: ENSP00000342768.4:p.Ala772Gly
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12464
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14606
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30766
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala772Gly
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

5-82816455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816455
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816455
    reference: chr 5
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2186C>T
  hgvsp: ENSP00000425959.2:p.Thr729Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8240C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8240C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2330C>T
  hgvsp: ENSP00000265077.3:p.Thr777Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2330C>T
  hgvsp: ENSP00000342768.4:p.Thr777Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8240C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8240C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6148
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr777Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

5-82816478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816478
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816478
    reference: chr 5
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8263A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2353A>G
  hgvsp: ENSP00000265077.3:p.Thr785Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2209A>G
  hgvsp: ENSP00000425959.2:p.Thr737Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8263A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8263A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2353A>G
  hgvsp: ENSP00000342768.4:p.Thr785Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8263A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30892
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3622
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6150
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr785Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

5-82816483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816483
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816483
    reference: chr 5
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8268G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8268G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2214G>A
  hgvsp: ENST00000512590.2:c.2214G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2358G>A
  hgvsp: ENST00000342785.4:c.2358G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2358G>A
  hgvsp: ENST00000265077.3:c.2358G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8268G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8268G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val786Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

5-82816493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816493
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816493
    reference: chr 5
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8278C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2368C>T
  hgvsp: ENSP00000342768.4:p.His790Tyr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8278C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8278C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2368C>T
  hgvsp: ENSP00000265077.3:p.His790Tyr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2224C>T
  hgvsp: ENSP00000425959.2:p.His742Tyr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8278C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His790Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

5-82816503-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816503
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816503
    reference: chr 5
allele count: 300
allele frequency: 2.474063566939913e-3
allele num: 121258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2234T>C
  hgvsp: ENSP00000425959.2:p.Leu745Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2378T>C
  hgvsp: ENSP00000265077.3:p.Leu793Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2378T>C
  hgvsp: ENSP00000342768.4:p.Leu793Ser
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8288T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8288T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8288T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8288T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21174
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14570
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30880
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu793Ser
num of homozygotes: 2
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-82816505-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816505
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816505
    reference: chr 5
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8290A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2236A>C
  hgvsp: ENSP00000425959.2:p.Ser746Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8290A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8290A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2380A>C
  hgvsp: ENSP00000342768.4:p.Ser794Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8290A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2380A>C
  hgvsp: ENSP00000265077.3:p.Ser794Arg
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21260
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6082
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9270
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser794Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

5-82816514-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816514
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816514
    reference: chr 5
allele count: 90
allele frequency: 7.524202852508904e-4
allele num: 119614
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2245G>C
  hgvsp: ENSP00000425959.2:p.Ala749Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2389G>C
  hgvsp: ENSP00000265077.3:p.Ala797Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8299G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8299G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2389G>C
  hgvsp: ENSP00000342768.4:p.Ala797Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8299G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8299G>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 9.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21076
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9165
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 5
hgvs: p.Ala797Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

5-82816517-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816517
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816517
    reference: chr 5
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2392G>A
  hgvsp: ENSP00000342768.4:p.Ala798Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2392G>A
  hgvsp: ENSP00000265077.3:p.Ala798Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2248G>A
  hgvsp: ENSP00000425959.2:p.Ala750Thr
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8302G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8302G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8302G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8302G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala798Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

5-82816520-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816520
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816520
    reference: chr 5
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2395A>G
  hgvsp: ENSP00000265077.3:p.Thr799Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8305A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8305A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8305A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8305A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2395A>G
  hgvsp: ENSP00000342768.4:p.Thr799Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2251A>G
  hgvsp: ENSP00000425959.2:p.Thr751Ala
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5922
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr799Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

5-82816525-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816525
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816525
    reference: chr 5
allele count: 2
allele frequency: 1.648125257519571e-5
allele num: 121350
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2400A>G
  hgvsp: ENST00000265077.3:c.2400A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2256A>G
  hgvsp: ENST00000512590.2:c.2256A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2400A>G
  hgvsp: ENST00000342785.4:c.2400A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8310A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8310A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8310A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8310A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5924
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val800Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

5-82816529-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816529
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816529
    reference: chr 5
allele count: 8
allele frequency: 6.592935669430205e-5
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8314A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8314A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2404A>G
  hgvsp: ENSP00000342768.4:p.Lys802Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2260A>G
  hgvsp: ENSP00000425959.2:p.Lys754Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8314A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2404A>G
  hgvsp: ENSP00000265077.3:p.Lys802Glu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8314A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31354
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys802Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

5-82816533-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816533
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816533
    reference: chr 5
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8318G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2264G>T
  hgvsp: ENSP00000425959.2:p.Trp755Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8318G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8318G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2408G>T
  hgvsp: ENSP00000342768.4:p.Trp803Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2408G>T
  hgvsp: ENSP00000265077.3:p.Trp803Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8318G>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp803Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

5-82816535-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816535
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816535
    reference: chr 5
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8320T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8320T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2410T>C
  hgvsp: ENSP00000265077.3:p.Ser804Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8320T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2410T>C
  hgvsp: ENSP00000342768.4:p.Ser804Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2266T>C
  hgvsp: ENSP00000425959.2:p.Ser756Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8320T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31354
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser804Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

5-82816555-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816555
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816555
    reference: chr 5
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8340A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8340A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8340A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8340A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2286A>G
  hgvsp: ENST00000512590.2:c.2286A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2430A>G
  hgvsp: ENST00000342785.4:c.2430A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2430A>G
  hgvsp: ENST00000265077.3:c.2430A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr810Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

5-82816569-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816569
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816569
    reference: chr 5
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8354T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8354T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2444T>G
  hgvsp: ENSP00000342768.4:p.Leu815Ter
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2444T>G
  hgvsp: ENSP00000265077.3:p.Leu815Ter
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2300T>G
  hgvsp: ENSP00000425959.2:p.Leu767Ter
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8354T>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8354T>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3642
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu815Ter
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

5-82816573-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816573
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816573
    reference: chr 5
allele count: 3
allele frequency: 2.472065658063878e-5
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2448G>A
  hgvsp: ENST00000265077.3:c.2448G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8358G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2304G>A
  hgvsp: ENST00000512590.2:c.2304G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8358G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2448G>A
  hgvsp: ENST00000342785.4:c.2448G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8358G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8358G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5918
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu816Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

5-82816574-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816574
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816574
    reference: chr 5
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8359T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2305T>C
  hgvsp: ENSP00000425959.2:p.Ser769Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2449T>C
  hgvsp: ENSP00000265077.3:p.Ser817Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8359T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2449T>C
  hgvsp: ENSP00000342768.4:p.Ser817Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8359T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8359T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser817Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

5-82816575-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816575
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816575
    reference: chr 5
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2450C>G
  hgvsp: ENSP00000265077.3:p.Ser817Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8360C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2306C>G
  hgvsp: ENSP00000425959.2:p.Ser769Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8360C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2450C>G
  hgvsp: ENSP00000342768.4:p.Ser817Cys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8360C>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8360C>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5915
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31364
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser817Cys
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/5-82816577-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816577
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816577
    reference: chr 5
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2308A>C
  hgvsp: ENSP00000425959.2:p.Thr770Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8362A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2452A>C
  hgvsp: ENSP00000342768.4:p.Thr818Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8362A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8362A>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2452A>C
  hgvsp: ENSP00000265077.3:p.Thr818Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8362A>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5915
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr818Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

5-82816588-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816588
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816588
    reference: chr 5
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8373A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2319A>G
  hgvsp: ENST00000512590.2:c.2319A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8373A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2463A>G
  hgvsp: ENST00000342785.4:c.2463A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8373A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2463A>G
  hgvsp: ENST00000265077.3:c.2463A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8373A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5914
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser821Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS

5-82816589-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816589
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816589
    reference: chr 5
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2464G>C
  hgvsp: ENSP00000265077.3:p.Ala822Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8374G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8374G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2464G>C
  hgvsp: ENSP00000342768.4:p.Ala822Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2320G>C
  hgvsp: ENSP00000425959.2:p.Ala774Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8374G>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8374G>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5915
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala822Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

5-82816590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816590
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816590
    reference: chr 5
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2465C>T
  hgvsp: ENSP00000342768.4:p.Ala822Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2321C>T
  hgvsp: ENSP00000425959.2:p.Ala774Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8375C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8375C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2465C>T
  hgvsp: ENSP00000265077.3:p.Ala822Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8375C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8375C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala822Val
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-82816591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816591
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816591
    reference: chr 5
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8376C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8376C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8376C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2322C>T
  hgvsp: ENST00000512590.2:c.2322C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2466C>T
  hgvsp: ENST00000265077.3:c.2466C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8376C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2466C>T
  hgvsp: ENST00000342785.4:c.2466C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21518
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5914
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala822Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP

5-82816608-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816608
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816608
    reference: chr 5
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2483C>T
  hgvsp: ENSP00000265077.3:p.Pro828Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2483C>T
  hgvsp: ENSP00000342768.4:p.Pro828Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8393C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8393C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8393C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2339C>T
  hgvsp: ENSP00000425959.2:p.Pro780Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8393C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5914
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31351
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro828Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

5-82816611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816611
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816611
    reference: chr 5
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8396C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8396C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2486C>T
  hgvsp: ENSP00000342768.4:p.Ala829Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8396C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2342C>T
  hgvsp: ENSP00000425959.2:p.Ala781Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8396C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2486C>T
  hgvsp: ENSP00000265077.3:p.Ala829Val
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala829Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

5-82816620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816620
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816620
    reference: chr 5
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8405C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8405C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8405C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2351C>T
  hgvsp: ENSP00000425959.2:p.Thr784Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2495C>T
  hgvsp: ENSP00000342768.4:p.Thr832Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8405C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2495C>T
  hgvsp: ENSP00000265077.3:p.Thr832Ile
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr832Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

5-82816623-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816623
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816623
    reference: chr 5
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2354C>T
  hgvsp: ENSP00000425959.2:p.Thr785Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8408C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8408C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2498C>T
  hgvsp: ENSP00000342768.4:p.Thr833Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8408C>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2498C>T
  hgvsp: ENSP00000265077.3:p.Thr833Ile
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8408C>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5913
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr833Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

5-82816625-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816625
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816625
    reference: chr 5
allele count: 2
allele frequency: 1.648315421639085e-5
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8410G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8410G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8410G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8410G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2500G>A
  hgvsp: ENSP00000342768.4:p.Val834Met
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2356G>A
  hgvsp: ENSP00000425959.2:p.Val786Met
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2500G>A
  hgvsp: ENSP00000265077.3:p.Val834Met
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5915
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val834Met
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-82816625-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816625
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816625
    reference: chr 5
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2356G>T
  hgvsp: ENSP00000425959.2:p.Val786Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8410G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8410G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8410G>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2500G>T
  hgvsp: ENSP00000342768.4:p.Val834Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2500G>T
  hgvsp: ENSP00000265077.3:p.Val834Leu
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8410G>T
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val834Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

5-82816630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816630
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816630
    reference: chr 5
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2505G>A
  hgvsp: ENST00000265077.3:c.2505G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2505G>A
  hgvsp: ENST00000342785.4:c.2505G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8415G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8415G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2361G>A
  hgvsp: ENST00000512590.2:c.2361G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8415G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8415G>A
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly835Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

5-82816631-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816631
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816631
    reference: chr 5
allele count: 12
allele frequency: 9.889566507334761e-5
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8416A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2506A>G
  hgvsp: ENSP00000265077.3:p.Met836Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2362A>G
  hgvsp: ENSP00000425959.2:p.Met788Val
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8416A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8416A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8416A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2506A>G
  hgvsp: ENSP00000342768.4:p.Met836Val
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5920
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 9294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met836Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

5-82816641-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816641
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816641
    reference: chr 5
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8426A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2516A>G
  hgvsp: ENSP00000265077.3:p.Lys839Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2516A>G
  hgvsp: ENSP00000342768.4:p.Lys839Arg
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8426A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8426A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8426A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2372A>G
  hgvsp: ENSP00000425959.2:p.Lys791Arg
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5909
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys839Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

5-82816660-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816660
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816660
    reference: chr 5
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8445T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2535T>C
  hgvsp: ENST00000265077.3:c.2535T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2391T>C
  hgvsp: ENST00000512590.2:c.2391T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8445T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8445T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2535T>C
  hgvsp: ENST00000342785.4:c.2535T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8445T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21516
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser845Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

5-82816667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816667
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816667
    reference: chr 5
allele count: 24
allele frequency: 1.979055001236909e-4
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8452G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8452G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8452G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8452G>A
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2542G>A
  hgvsp: ENSP00000342768.4:p.Glu848Lys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2542G>A
  hgvsp: ENSP00000265077.3:p.Glu848Lys
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2398G>A
  hgvsp: ENSP00000425959.2:p.Glu800Lys
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14202
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu848Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

5-82816671-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816671
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816671
    reference: chr 5
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8456A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2546A>G
  hgvsp: ENSP00000265077.3:p.Asp849Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2546A>G
  hgvsp: ENSP00000342768.4:p.Asp849Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2402A>G
  hgvsp: ENSP00000425959.2:p.Asp801Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8456A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8456A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8456A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp849Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

5-82816680-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816680
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816680
    reference: chr 5
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8465A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2411A>G
  hgvsp: ENSP00000425959.2:p.Asp804Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2555A>G
  hgvsp: ENSP00000342768.4:p.Asp852Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8465A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2555A>G
  hgvsp: ENSP00000265077.3:p.Asp852Gly
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8465A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8465A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp852Gly
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

5-82816692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816692
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816692
    reference: chr 5
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2567T>C
  hgvsp: ENSP00000265077.3:p.Leu856Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8477T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8477T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2567T>C
  hgvsp: ENSP00000342768.4:p.Leu856Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2423T>C
  hgvsp: ENSP00000425959.2:p.Leu808Pro
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8477T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8477T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu856Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

5-82816694-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816694
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816694
    reference: chr 5
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2425A>T
  hgvsp: ENSP00000425959.2:p.Ile809Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8479A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2569A>T
  hgvsp: ENSP00000265077.3:p.Ile857Phe
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8479A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8479A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8479A>T
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2569A>T
  hgvsp: ENSP00000342768.4:p.Ile857Phe
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile857Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

5-82816702-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816702
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816702
    reference: chr 5
allele count: 4
allele frequency: 3.299731071917638e-5
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2577T>C
  hgvsp: ENST00000342785.4:c.2577T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8487T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8487T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2577T>C
  hgvsp: ENST00000265077.3:c.2577T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8487T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2433T>C
  hgvsp: ENST00000512590.2:c.2433T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8487T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12606
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5904
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9240
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp859Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-82816730-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816730
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816730
    reference: chr 5
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2605A>G
  hgvsp: ENSP00000265077.3:p.Thr869Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8515A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8515A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2461A>G
  hgvsp: ENSP00000425959.2:p.Thr821Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2605A>G
  hgvsp: ENSP00000342768.4:p.Thr869Ala
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8515A>G
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8515A>G
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr869Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

5-82816732-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82816732
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 82816732
    reference: chr 5
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000265077
  ensembl transcript: ENST00000265077
  gene symbol: VCAN
  hgvsc: ENST00000265077.3:c.2607T>C
  hgvsp: ENST00000265077.3:c.2607T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000425959
  ensembl transcript: ENST00000512590
  gene symbol: VCAN
  hgvsc: ENST00000512590.2:c.2463T>C
  hgvsp: ENST00000512590.2:c.2463T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl transcript: ENST00000515397
  gene symbol: VCAN
  hgvsc: ENST00000515397.1:n.295+8517T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000426251
  ensembl transcript: ENST00000513960
  gene symbol: VCAN
  hgvsc: ENST00000513960.1:c.1042+8517T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000342768
  ensembl transcript: ENST00000342785
  gene symbol: VCAN
  hgvsc: ENST00000342785.4:c.2607T>C
  hgvsp: ENST00000342785.4:c.2607T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000421362
  ensembl transcript: ENST00000502527
  gene symbol: VCAN
  hgvsc: ENST00000502527.2:c.1042+8517T>C
  variant of: http://identifiers.org/hgnc/2464
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000038427
  ensembl protein: ENSP00000340062
  ensembl transcript: ENST00000343200
  gene symbol: VCAN
  hgvsc: ENST00000343200.5:c.1042+8517T>C
  variant of: http://identifiers.org/hgnc/2464
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr869Thr
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6261
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1786
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9240
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.020832078993317e-5
allele num: 66436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.641660597232338e-4
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.883e0

QD
type: SiteQuality
SIO_000300: 1.724e1

MQ
type: SiteQuality
SIO_000300: 5.778e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.862853e6

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

GenotypeQuality
all individuals: 9253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3054
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6252
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.514e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.276e1

DP
type: SiteQuality
SIO_000300: 1.863595e6

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.155e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.985e0

FS
type: SiteQuality
SIO_000300: 7.004e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

DP
type: SiteQuality
SIO_000300: 1.863868e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6404
bin: 9.75e1
variant carriers: 241

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9235
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 217
allele frequency: 3.263648668972778e-3
allele num: 66490
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.035208417644678e-4
allele num: 9884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.077155824508321e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.044750130593766e-3
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.871857e6

QD
type: SiteQuality
SIO_000300: 1.423e1

VQSLOD
type: SiteQuality
SIO_000300: 5.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

GenotypeQuality
all individuals: 6200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: -1.752e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

QD
type: SiteQuality
SIO_000300: 1.317e1

DP
type: SiteQuality
SIO_000300: 1.864192e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

FS
type: SiteQuality
SIO_000300: 5.988e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.064e0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6199
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.700191404210893e-5
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.864901e6

FS
type: SiteQuality
SIO_000300: 2.369e0

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.613e0

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.78e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 455
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29868
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.86535e6

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 1.482e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.287e0

VQSLOD
type: SiteQuality
SIO_000300: -2.541e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.075e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.759e0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3059
bin: 8.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.020539669754329e-4
allele num: 9932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.865368e6

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

GenotypeQuality
all individuals: 400
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9250
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.506263706552107e-5
allele num: 66574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.99e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.315e0

QD
type: SiteQuality
SIO_000300: 1.366e1

DP
type: SiteQuality
SIO_000300: 1.866462e6

FS
type: SiteQuality
SIO_000300: 6.146e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

GenotypeQuality
all individuals: 101
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4329
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

FS
type: SiteQuality
SIO_000300: 6.146e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

DP
type: SiteQuality
SIO_000300: 1.866462e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.315e0

QD
type: SiteQuality
SIO_000300: 1.366e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.001401962747847e-4
allele num: 9986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.07e-1

FS
type: SiteQuality
SIO_000300: 9.429999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.062e0

DP
type: SiteQuality
SIO_000300: 1.86667e6

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4321
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.877e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

QD
type: SiteQuality
SIO_000300: 8.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.866397e6

VQSLOD
type: SiteQuality
SIO_000300: -3.747e-1

GenotypeQuality
all individuals: 366
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29841
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variant carriers: 0

GenotypeQuality
all individuals: 3707
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.956192751891676e-5
allele num: 10044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.321e0

DP
type: SiteQuality
SIO_000300: 1.865942e6

FS
type: SiteQuality
SIO_000300: 2.805e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.128e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6183
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.987676406281057e-4
allele num: 10062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e0

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

FS
type: SiteQuality
SIO_000300: 2.751e0

QD
type: SiteQuality
SIO_000300: 1.449e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.865603e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.513e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.063e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 5.815e1

FS
type: SiteQuality
SIO_000300: 1.352e0

DP
type: SiteQuality
SIO_000300: 1.865506e6

QD
type: SiteQuality
SIO_000300: 1.307e1

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.424242424242424e-4
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

East Asian
type: Population
allele count: 33
allele frequency: 3.83364312267658e-3
allele num: 8608
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.036e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

QD
type: SiteQuality
SIO_000300: 1.366e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.865711e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
all individuals: 6184
bin: 9.75e1
variant carriers: 29

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.219206680584551e-4
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.002912825440677e-4
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.103e0

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.201e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.866083e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6159
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.864815e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

GenotypeQuality
all individuals: 265
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
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GenotypeQuality
all individuals: 1400
bin: 8.75e1
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GenotypeQuality
all individuals: 29814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3018
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GenotypeQuality
all individuals: 3628
bin: 7.25e1
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GenotypeQuality
all individuals: 6158
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GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 9152
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.832841691248771e-5
allele num: 10170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.663e0

MQRankSum
type: SiteQuality
SIO_000300: -1.769e0

QD
type: SiteQuality
SIO_000300: 4.59e0

DP
type: SiteQuality
SIO_000300: 1.864592e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.235e0

MQ
type: SiteQuality
SIO_000300: 5.038e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

GenotypeQuality
all individuals: 152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.864811e6

VQSLOD
type: SiteQuality
SIO_000300: -5.255e-1

FS
type: SiteQuality
SIO_000300: 1.0137e1

QD
type: SiteQuality
SIO_000300: 1.236e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.17e0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
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variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

FS
type: SiteQuality
SIO_000300: 4.558e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.94e-1

QD
type: SiteQuality
SIO_000300: 1.597e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.865403e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.817396426467701e-5
allele num: 10186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 1.302e0

DP
type: SiteQuality
SIO_000300: 1.865697e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

QD
type: SiteQuality
SIO_000300: 1.759e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6155
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9181
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.866174e6

VQSLOD
type: SiteQuality
SIO_000300: -5.237000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 5.217e0

QD
type: SiteQuality
SIO_000300: 1.708e1

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6155
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.217e0

QD
type: SiteQuality
SIO_000300: 1.708e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

DP
type: SiteQuality
SIO_000300: 1.866174e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: -5.237000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 278
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737317581653926e-4
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.866158e6

QD
type: SiteQuality
SIO_000300: 1.63e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 20

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9182
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.957713390759593e-3
allele num: 10216
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

FS
type: SiteQuality
SIO_000300: 1.742e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

DP
type: SiteQuality
SIO_000300: 1.867256e6

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1400
bin: 8.75e1
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GenotypeQuality
all individuals: 3005
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00147072065312e-5
allele num: 66634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 1.966e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.178e0

QD
type: SiteQuality
SIO_000300: 1.07e1

DP
type: SiteQuality
SIO_000300: 1.867979e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 3005
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.944390433599067e-4
allele num: 10286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.518e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-1

FS
type: SiteQuality
SIO_000300: 2.35e0

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

DP
type: SiteQuality
SIO_000300: 1.868956e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 1751
bin: 9.25e1
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GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 4226
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000750187546887e-5
allele num: 66650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.41e-1

FS
type: SiteQuality
SIO_000300: 2.478e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 1.301e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.869771e6

MQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.31e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6147
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30705
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 6.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.326e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.33e1

VQSLOD
type: SiteQuality
SIO_000300: 5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.870111e6

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 5.399892002159956e-4
allele num: 66668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.833e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.872432e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.839e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.697e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 6.346e0

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: -1.965e-1

DP
type: SiteQuality
SIO_000300: 1.870876e6

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 4.535e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

QD
type: SiteQuality
SIO_000300: 1.62e1

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

DP
type: SiteQuality
SIO_000300: 1.871863e6

GenotypeQuality
all individuals: 9252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1750
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 4224
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.498e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 2.56e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

QD
type: SiteQuality
SIO_000300: 1.222e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

DP
type: SiteQuality
SIO_000300: 1.872121e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 6132
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.816e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

MQ
type: SiteQuality
SIO_000300: 5.624e1

FS
type: SiteQuality
SIO_000300: 3.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 1.107e1

DP
type: SiteQuality
SIO_000300: 1.873422e6

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 297

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4201
bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.000240009600384e-5
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.210444406017638e-3
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 282
allele frequency: 2.718334297281666e-2
allele num: 10374
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.467e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.99e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.890743e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.048e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

QD
type: SiteQuality
SIO_000300: 2.964e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.876202e6

MQ
type: SiteQuality
SIO_000300: 5.838e1

VQSLOD
type: SiteQuality
SIO_000300: -2.734e0

GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 2960
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 5

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.329373398555789e-4
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.225047679593134e-3
allele num: 6292
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.393665158371041e-3
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.863502068150482e-4
allele num: 10154
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.739130434782609e-4
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 58
allele frequency: 8.828812372514993e-4
allele num: 65694
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.661e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.116e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e0

FS
type: SiteQuality
SIO_000300: 2.84158e2

QD
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.835e2

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 31310
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GenotypeQuality
all individuals: 60
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GenotypeQuality
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GenotypeQuality
all individuals: 5923
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1385
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GenotypeQuality
all individuals: 3015
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499205421126803e-5
allele num: 66702
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BaseQRankSum
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FS
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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East Asian
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498935755613514e-5
allele num: 66714
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

DP
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
type: SiteQuality
SIO_000300: 1.806e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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Other
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allele frequency: 1.103752759381898e-3
allele num: 906
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South Asian
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allele num: 16504
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DP
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FS
type: SiteQuality
SIO_000300: 5.21e-1

BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.622786759045419e-5
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 6.79e0

ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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SIO_000300: -1.658e0

MQRankSum
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SIO_000300: 6.27e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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East Asian
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allele num: 8650
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South Asian
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African
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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MQ
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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East Asian
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African
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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allele num: 66718
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.228e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.129999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

DP
type: SiteQuality
SIO_000300: 1.866985e6

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.866976e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.95e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

FS
type: SiteQuality
SIO_000300: 1.336e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3008
bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.941e1

VQSLOD
type: SiteQuality
SIO_000300: -2.288e0

DP
type: SiteQuality
SIO_000300: 1.867082e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 8.002000000000001e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9299
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.705e0

DP
type: SiteQuality
SIO_000300: 1.866989e6

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

FS
type: SiteQuality
SIO_000300: 5.291e0

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
all individuals: 5914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.8e0

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 1.867091e6

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.344e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.278e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.122e1

FS
type: SiteQuality
SIO_000300: 8.63e-1

DP
type: SiteQuality
SIO_000300: 1.867047e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.867045e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.024e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.86e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.86707e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.358e0

FS
type: SiteQuality
SIO_000300: 2.723e0

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.85e-1

VQSLOD
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.866864e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.866818e6

BaseQRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
SIO_000300: -6.99e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.406e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

DP
type: SiteQuality
SIO_000300: 1.866732e6

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 1.543e0

QD
type: SiteQuality
SIO_000300: 1.421e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.724e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3635
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.543e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.421e1

DP
type: SiteQuality
SIO_000300: 1.866732e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.724e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.298e1

MQ
type: SiteQuality
SIO_000300: 5.988e1

MQRankSum
type: SiteQuality
SIO_000300: 6.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

FS
type: SiteQuality
SIO_000300: 4.696e0

DP
type: SiteQuality
SIO_000300: 1.866488e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.557e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.270083605961468e-4
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 1.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.357e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.56e-1

DP
type: SiteQuality
SIO_000300: 1.867027e6

GenotypeQuality
all individuals: 1745
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9296
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 1380
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998320940273447e-5
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e0

VQSLOD
type: SiteQuality
SIO_000300: -1.007e0

QD
type: SiteQuality
SIO_000300: 8.58e0

FS
type: SiteQuality
SIO_000300: 1.045e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

DP
type: SiteQuality
SIO_000300: 1.865654e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.849e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.457814661134163e-4
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.649670065986803e-4
allele num: 66680
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 8
allele frequency: 4.849072614862408e-4
allele num: 16498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.865667e6

FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.688e0

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

DP
type: SiteQuality
SIO_000300: 1.863572e6

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.21e0

DP
type: SiteQuality
SIO_000300: 1.862894e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.231e1

MQRankSum
type: SiteQuality
SIO_000300: 8.57e-1

DP
type: SiteQuality
SIO_000300: 1.862082e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.673e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5904
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

DP
type: SiteQuality
SIO_000300: 1.862062e6

FS
type: SiteQuality
SIO_000300: 1.543e0

QD
type: SiteQuality
SIO_000300: 1.154e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.457814661134163e-4
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.6e0

DP
type: SiteQuality
SIO_000300: 1.861948e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.93e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5902
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 5.333e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

QD
type: SiteQuality
SIO_000300: 1.865e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -1.02e0

DP
type: SiteQuality
SIO_000300: 1.861721e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0