9-129815076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815076
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815076
    reference: chr 9
allele count: 1
allele frequency: 8.35952651641811e-6
allele num: 119624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-50G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-50G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-50G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-50G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-50G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-50G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-50G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-50G>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5760
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17500
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

9-129815077-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815077
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815077
    reference: chr 9
allele count: 2
allele frequency: 1.670955452327641e-5
allele num: 119692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-49T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-49T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-49T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-49T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-49T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-49T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-49T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-49T>C
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9808
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17506
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3264
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

9-129815081-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815081
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815081
    reference: chr 9
allele count: 5
allele frequency: 4.176900071842681e-5
allele num: 119706
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-45G>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-45G>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-45G>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-45G>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-45G>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-45G>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-45G>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-45G>C
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-129815082-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815082
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815082
    reference: chr 9
allele count: 1
allele frequency: 8.352404657300837e-6
allele num: 119726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-44T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-44T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-44T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-44T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-44T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-44T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-44T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-44T>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4790
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

9-129815088-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815088
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815088
    reference: chr 9
allele count: 9
allele frequency: 7.504002134471719e-5
allele num: 119936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-38A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-38A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-38A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-38A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-38A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-38A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-38A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-38A>T
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12835
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10430
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11736
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

9-129815090-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815090
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815090
    reference: chr 9
allele count: 1
allele frequency: 8.334305668994715e-6
allele num: 119986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-36A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-36A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-36A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-36A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-36A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-36A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-36A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-36A>T
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

9-129815092-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815092
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815092
    reference: chr 9
allele count: 1
allele frequency: 8.335556148306214e-6
allele num: 119968
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-34C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-34C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-34C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-34C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-34C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-34C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-34C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-34C>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10618
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17553
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

9-129815109-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815109
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815109
    reference: chr 9
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-17C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-17C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-17C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-17C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-17C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-17C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-17C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-17C>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6460
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17570
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-129815111-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815111
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815111
    reference: chr 9
allele count: 4
allele frequency: 3.308191081116845e-5
allele num: 120912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-15A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-15A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-15A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-15A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-15A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-15A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-15A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-15A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17575
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 17619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

9-129815115-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815116
    reference: chr 9
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-4dupT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-4dupT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-4dupT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-4dupT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-4dupT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-4dupT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-4dupT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-4dupT
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5066
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

9-129815115-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815114
    reference: chr 9
allele count: 11
allele frequency: 9.092261658759154e-5
allele num: 120982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-4delT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-4delT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-4delT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-4delT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-4delT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-4delT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-4delT
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-4delT
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17586
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: CT
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/9-129815115-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815115
    reference: chr 9
allele count: 3
allele frequency: 2.479707725116133e-5
allele num: 120982
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.391-11C>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.391-11C>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.391-11C>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.391-11C>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.391-11C>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.301-11C>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.78-11C>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.664-11C>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

9-129815134-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815134
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815134
    reference: chr 9
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.309A>G
  hgvsp: ENST00000319107.4:c.309A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.399A>G
  hgvsp: ENST00000394022.3:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.86A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.399A>G
  hgvsp: ENST00000424082.2:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.399A>G
  hgvsp: ENST00000373434.1:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.399A>G
  hgvsp: ENST00000373436.1:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.399A>G
  hgvsp: ENST00000259351.5:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.672A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu133Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-129815138-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815138
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815138
    reference: chr 9
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.403C>A
  hgvsp: ENSP00000259351.5:p.Leu135Ile
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.403C>A
  hgvsp: ENSP00000377590.3:p.Leu135Ile
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.403C>A
  hgvsp: ENSP00000362535.1:p.Leu135Ile
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.676C>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.403C>A
  hgvsp: ENSP00000415630.2:p.Leu135Ile
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.403C>A
  hgvsp: ENSP00000362533.1:p.Leu135Ile
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.313C>A
  hgvsp: ENSP00000317149.4:p.Leu105Ile
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.90C>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17581
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu135Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

9-129815189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815189
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815189
    reference: chr 9
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.727C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.454C>T
  hgvsp: ENSP00000362535.1:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.454C>T
  hgvsp: ENSP00000377590.3:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.364C>T
  hgvsp: ENSP00000317149.4:p.Pro122Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.454C>T
  hgvsp: ENSP00000415630.2:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.454C>T
  hgvsp: ENSP00000259351.5:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.141C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.454C>T
  hgvsp: ENSP00000362533.1:p.Pro152Ser
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro152Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

9-129815193-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815193
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815193
    reference: chr 9
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.458T>C
  hgvsp: ENSP00000362533.1:p.Ile153Thr
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.458T>C
  hgvsp: ENSP00000259351.5:p.Ile153Thr
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.145T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.458T>C
  hgvsp: ENSP00000362535.1:p.Ile153Thr
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.458T>C
  hgvsp: ENSP00000415630.2:p.Ile153Thr
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.458T>C
  hgvsp: ENSP00000377590.3:p.Ile153Thr
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.368T>C
  hgvsp: ENSP00000317149.4:p.Ile123Thr
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.731T>C
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile153Thr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

9-129815216-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815216
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815216
    reference: chr 9
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.168G>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.481G>T
  hgvsp: ENSP00000377590.3:p.Ala161Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.481G>T
  hgvsp: ENSP00000362533.1:p.Ala161Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.481G>T
  hgvsp: ENSP00000415630.2:p.Ala161Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.481G>T
  hgvsp: ENSP00000259351.5:p.Ala161Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.391G>T
  hgvsp: ENSP00000317149.4:p.Ala131Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.481G>T
  hgvsp: ENSP00000362535.1:p.Ala161Ser
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.754G>T
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5073
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala161Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

9-129815229-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815229
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815229
    reference: chr 9
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+11C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+11C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+11C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+11C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+11C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+11C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+11C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+11C>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17583
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-129815229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815229
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815229
    reference: chr 9
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+11C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+11C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+11C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+11C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+11C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+11C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+11C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+11C>T
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

9-129815230-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815230
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815230
    reference: chr 9
allele count: 2
allele frequency: 1.648723063986942e-5
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+12T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+12T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+12T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+12T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+12T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+12T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+12T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+12T>C
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

9-129815234-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815234
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815234
    reference: chr 9
allele count: 5
allele frequency: 4.122963256151461e-5
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+16T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+16T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+16T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+16T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+16T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+16T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+16T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+16T>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

9-129815237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815237
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815237
    reference: chr 9
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+19G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+19G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+19G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+19G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+19G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+19G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+19G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+19G>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

9-129815241-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815241
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815241
    reference: chr 9
allele count: 6
allele frequency: 4.947963912849862e-5
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+23A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+23A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+23A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+23A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+23A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+23A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+23A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+23A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

9-129815248-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815248
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815248
    reference: chr 9
allele count: 9
allele frequency: 7.423415100875964e-5
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+30T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+30T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+30T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+30T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+30T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+30T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+30T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+30T>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6437
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-129815253-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815253
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815253
    reference: chr 9
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+35C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+35C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+35C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+35C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+35C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+35C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+35C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+35C>T
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16397
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

9-129815255-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815255
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815255
    reference: chr 9
allele count: 10
allele frequency: 8.250825082508251e-5
allele num: 121200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+37A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+37A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+37A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+37A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+37A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+37A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+37A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+37A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

9-129815265-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129815265
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129815266
    reference: chr 9
allele count: 27
allele frequency: 2.229194187582563e-4
allele num: 121120
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.483+49dupG
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.393+49dupG
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.756+49dupG
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.170+49dupG
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.483+49dupG
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.483+49dupG
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.483+49dupG
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.483+49dupG
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10860
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13134
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5040
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17608
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP

9-129831461-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831461
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831461
    reference: chr 9
allele count: 1
allele frequency: 8.624407072013798e-6
allele num: 115950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-48T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-48T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-48T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-48T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-48T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-48T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-48T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-48T>C
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5069
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

9-129831466-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831466
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831466
    reference: chr 9
allele count: 1
allele frequency: 8.611335962661248e-6
allele num: 116126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-43T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-43T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-43T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-43T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-43T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-43T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-43T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-43T>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11953
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

9-129831472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831472
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831472
    reference: chr 9
allele count: 1
allele frequency: 8.612522607871846e-6
allele num: 116110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-37G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-37G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-37G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-37G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-37G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-37G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-37G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-37G>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11961
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

9-129831473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831473
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831473
    reference: chr 9
allele count: 1
allele frequency: 8.606000103272e-6
allele num: 116198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-36G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-36G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-36G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-36G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-36G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-36G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-36G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-36G>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11967
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

9-129831478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831478
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831478
    reference: chr 9
allele count: 1
allele frequency: 8.576035127439883e-6
allele num: 116604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-31C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-31C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-31C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-31C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-31C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-31C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-31C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-31C>T
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5747
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-129831481-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831481
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831481
    reference: chr 9
allele count: 10
allele frequency: 8.559152301556054e-5
allele num: 116834
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-28A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-28A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-28A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-28A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-28A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-28A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-28A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-28A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20584
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10865
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12000
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-129831483-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831483
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831483
    reference: chr 9
allele count: 1
allele frequency: 8.543795495711015e-6
allele num: 117044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-26T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-26T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-26T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-26T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-26T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-26T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-26T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-26T>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3962
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-129831489-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831489
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831489
    reference: chr 9
allele count: 26
allele frequency: 2.205333514283776e-4
allele num: 117896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-20A>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-20A>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-20A>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-20A>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-20A>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-20A>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-20A>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-20A>C
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23001
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

9-129831489-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831489
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831489
    reference: chr 9
allele count: 3
allele frequency: 2.544615593404356e-5
allele num: 117896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-20A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-20A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-20A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-20A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-20A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-20A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-20A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-20A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

9-129831493-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831493
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831493
    reference: chr 9
allele count: 3
allele frequency: 2.533355852052018e-5
allele num: 118420
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-16T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-16T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-16T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-16T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-16T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-16T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-16T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-16T>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-129831502-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831502
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831502
    reference: chr 9
allele count: 1
allele frequency: 8.347384764353328e-6
allele num: 119798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.484-7A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.757-7A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.171-7A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.484-7A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.394-7A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.484-7A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.484-7A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.484-7A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 8.75e1
  variant carriers: 0
hgvs: c.484-7A>G
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

9-129831514-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831514
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831514
    reference: chr 9
allele count: 2
allele frequency: 1.656534199148542e-5
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.399A>G
  hgvsp: ENST00000319107.4:c.399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.489A>G
  hgvsp: ENST00000373436.1:c.489A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.489A>G
  hgvsp: ENST00000424082.2:c.489A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.489A>G
  hgvsp: ENST00000394022.3:c.489A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.489A>G
  hgvsp: ENST00000259351.5:c.489A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.762A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.176A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.489A>G
  hgvsp: ENST00000373434.1:c.489A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12142
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu163Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-129831518-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831518
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831518
    reference: chr 9
allele count: 4
allele frequency: 3.309614429918914e-5
allele num: 120860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.180C>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.493C>A
  hgvsp: ENST00000373434.1:c.493C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.493C>A
  hgvsp: ENST00000394022.3:c.493C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.493C>A
  hgvsp: ENST00000424082.2:c.493C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.403C>A
  hgvsp: ENST00000319107.4:c.403C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.493C>A
  hgvsp: ENST00000373436.1:c.493C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.493C>A
  hgvsp: ENST00000259351.5:c.493C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.766C>A
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25419
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12151
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg165Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

9-129831520-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831520
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831520
    reference: chr 9
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.495A>G
  hgvsp: ENST00000424082.2:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.495A>G
  hgvsp: ENST00000373436.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.495A>G
  hgvsp: ENST00000394022.3:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.405A>G
  hgvsp: ENST00000319107.4:c.405A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.495A>G
  hgvsp: ENST00000373434.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.768A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.495A>G
  hgvsp: ENST00000259351.5:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.182A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12161
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3642
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg165Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

9-129831532-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831532
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831532
    reference: chr 9
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.507T>C
  hgvsp: ENST00000259351.5:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.417T>C
  hgvsp: ENST00000319107.4:c.417T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.507T>C
  hgvsp: ENST00000373436.1:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.780T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.507T>C
  hgvsp: ENST00000373434.1:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.507T>C
  hgvsp: ENST00000394022.3:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.194T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.507T>C
  hgvsp: ENST00000424082.2:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7044
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr169Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-129831535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831535
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831535
    reference: chr 9
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.510C>T
  hgvsp: ENST00000394022.3:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.510C>T
  hgvsp: ENST00000373436.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.420C>T
  hgvsp: ENST00000319107.4:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.510C>T
  hgvsp: ENST00000424082.2:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.783C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.197C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.510C>T
  hgvsp: ENST00000259351.5:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.510C>T
  hgvsp: ENST00000373434.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12179
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr170Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

9-129831541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831541
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831541
    reference: chr 9
allele count: 4
allele frequency: 3.298751422586551e-5
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.516G>A
  hgvsp: ENST00000394022.3:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.203G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.516G>A
  hgvsp: ENST00000373436.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.516G>A
  hgvsp: ENST00000373434.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.516G>A
  hgvsp: ENST00000424082.2:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.789G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.426G>A
  hgvsp: ENST00000319107.4:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.516G>A
  hgvsp: ENST00000259351.5:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12182
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu172Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/9-129831549-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831549
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831549
    reference: chr 9
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.524A>C
  hgvsp: ENSP00000415630.2:p.Asp175Ala
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.797A>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.524A>C
  hgvsp: ENSP00000377590.3:p.Asp175Ala
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.211A>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.524A>C
  hgvsp: ENSP00000362535.1:p.Asp175Ala
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.524A>C
  hgvsp: ENSP00000259351.5:p.Asp175Ala
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.524A>C
  hgvsp: ENSP00000362533.1:p.Asp175Ala
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.434A>C
  hgvsp: ENSP00000317149.4:p.Asp145Ala
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp175Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

9-129831550-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831550
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831550
    reference: chr 9
allele count: 2
allele frequency: 1.648886177387175e-5
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.212C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.435C>T
  hgvsp: ENST00000319107.4:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.525C>T
  hgvsp: ENST00000424082.2:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.525C>T
  hgvsp: ENST00000259351.5:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.798C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.525C>T
  hgvsp: ENST00000373436.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.525C>T
  hgvsp: ENST00000373434.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.525C>T
  hgvsp: ENST00000394022.3:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3088
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp175Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

9-129831552-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831552
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831552
    reference: chr 9
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.527A>T
  hgvsp: ENSP00000377590.3:p.Tyr176Phe
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.214A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.527A>T
  hgvsp: ENSP00000362533.1:p.Tyr176Phe
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.527A>T
  hgvsp: ENSP00000259351.5:p.Tyr176Phe
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.527A>T
  hgvsp: ENSP00000362535.1:p.Tyr176Phe
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.437A>T
  hgvsp: ENSP00000317149.4:p.Tyr146Phe
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.527A>T
  hgvsp: ENSP00000415630.2:p.Tyr176Phe
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.800A>T
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25864
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr176Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

9-129831556-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831556
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831556
    reference: chr 9
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.531G>C
  hgvsp: ENST00000424082.2:c.531G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.218G>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.531G>C
  hgvsp: ENST00000394022.3:c.531G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.531G>C
  hgvsp: ENST00000373434.1:c.531G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.441G>C
  hgvsp: ENST00000319107.4:c.441G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.804G>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.531G>C
  hgvsp: ENST00000373436.1:c.531G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.531G>C
  hgvsp: ENST00000259351.5:c.531G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25860
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu177Leu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

9-129831562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831562
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831562
    reference: chr 9
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.224G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.537G>A
  hgvsp: ENST00000394022.3:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.537G>A
  hgvsp: ENST00000424082.2:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.537G>A
  hgvsp: ENST00000373434.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.810G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.537G>A
  hgvsp: ENST00000373436.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.447G>A
  hgvsp: ENST00000319107.4:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.537G>A
  hgvsp: ENST00000259351.5:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser179Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

9-129831568-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831568
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831568
    reference: chr 9
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.543A>G
  hgvsp: ENST00000424082.2:c.543A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.543A>G
  hgvsp: ENST00000373436.1:c.543A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.453A>G
  hgvsp: ENST00000319107.4:c.453A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.543A>G
  hgvsp: ENST00000259351.5:c.543A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.543A>G
  hgvsp: ENST00000373434.1:c.543A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.230A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.543A>G
  hgvsp: ENST00000394022.3:c.543A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.816A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7073
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12194
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu181Glu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

9-129831582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831582
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831582
    reference: chr 9
allele count: 22
allele frequency: 1.812937783271529e-4
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.830G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.557G>A
  hgvsp: ENSP00000362535.1:p.Arg186Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.467G>A
  hgvsp: ENSP00000317149.4:p.Arg156Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.557G>A
  hgvsp: ENSP00000362533.1:p.Arg186Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.557G>A
  hgvsp: ENSP00000415630.2:p.Arg186Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.557G>A
  hgvsp: ENSP00000377590.3:p.Arg186Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.244G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.557G>A
  hgvsp: ENSP00000259351.5:p.Arg186Gln
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 25385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg186Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

9-129831587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831587
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831587
    reference: chr 9
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.249C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.562C>T
  hgvsp: ENSP00000259351.5:p.Arg188Trp
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.562C>T
  hgvsp: ENSP00000362533.1:p.Arg188Trp
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.835C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.562C>T
  hgvsp: ENSP00000377590.3:p.Arg188Trp
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.562C>T
  hgvsp: ENSP00000362535.1:p.Arg188Trp
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.472C>T
  hgvsp: ENSP00000317149.4:p.Arg158Trp
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.562C>T
  hgvsp: ENSP00000415630.2:p.Arg188Trp
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7078
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25877
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg188Trp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

9-129831600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831600
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831600
    reference: chr 9
allele count: 9
allele frequency: 7.415952537903758e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.575G>A
  hgvsp: ENSP00000362535.1:p.Arg192Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.485G>A
  hgvsp: ENSP00000317149.4:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.575G>A
  hgvsp: ENSP00000415630.2:p.Arg192Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.848G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.575G>A
  hgvsp: ENSP00000377590.3:p.Arg192Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.575G>A
  hgvsp: ENSP00000259351.5:p.Arg192Gln
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.262G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.575G>A
  hgvsp: ENSP00000362533.1:p.Arg192Gln
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg192Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

9-129831602-A-AGCCTGAAGATGGTTCCAAGTATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831602
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831625
    reference: chr 9
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: AGCCTGAAGATGGTTCCAAGTATT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsp: ENSP00000362533.1:p.Pro201AlafsTer2
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsp: ENSP00000415630.2:p.Pro201AlafsTer2
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsp: ENSP00000317149.4:p.Pro171AlafsTer2
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsp: ENSP00000362535.1:p.Pro201AlafsTer2
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsp: ENSP00000259351.5:p.Pro201AlafsTer2
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsp: ENSP00000377590.3:p.Pro201AlafsTer2
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12215
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25860
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro201AlafsTer2
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

9-129831628-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831628
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831628
    reference: chr 9
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.603C>G
  hgvsp: ENST00000373436.1:c.603C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.603C>G
  hgvsp: ENST00000373434.1:c.603C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.603C>G
  hgvsp: ENST00000394022.3:c.603C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.876C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.290C>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.513C>G
  hgvsp: ENST00000319107.4:c.513C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.603C>G
  hgvsp: ENST00000424082.2:c.603C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.603C>G
  hgvsp: ENST00000259351.5:c.603C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro201Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

9-129831631-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831631
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831631
    reference: chr 9
allele count: 5
allele frequency: 4.119905736556747e-5
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.606T>C
  hgvsp: ENST00000373436.1:c.606T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.879T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.606T>C
  hgvsp: ENST00000259351.5:c.606T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.606T>C
  hgvsp: ENST00000424082.2:c.606T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.293T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.606T>C
  hgvsp: ENST00000373434.1:c.606T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.606T>C
  hgvsp: ENST00000394022.3:c.606T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000317149
  ensembl transcript: ENST00000319107
  gene symbol: RALGPS1
  hgvsc: ENST00000319107.4:c.516T>C
  hgvsp: ENST00000319107.4:c.516T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr202Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

9-129831645-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831645
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831645
    reference: chr 9
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+10T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+10T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+10T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+10T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+10T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+10T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.893T>C
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3671
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12245
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4557
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

9-129831647-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831647
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831647
    reference: chr 9
allele count: 4
allele frequency: 3.296196189597204e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.895A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+12A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+12A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+12A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+12A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+12A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+12A>T
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25482
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

9-129831651-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831651
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831651
    reference: chr 9
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+16G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+16G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+16G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+16G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.899G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+16G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+16G>A
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4552
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7016
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

9-129831656-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831656
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831656
    reference: chr 9
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.904A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+21A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+21A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+21A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+21A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+21A>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+21A>T
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12258
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24983
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-129831659-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831659
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831659
    reference: chr 9
allele count: 121336
allele frequency: 9.999505529824793e-1
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+24T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+24T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+24T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+24T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+24T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.907T>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+24T>A
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 6.75e1
  variant carriers: 5292
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 5721
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 8.75e1
  variant carriers: 2206
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 5.75e1
  variant carriers: 5923
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 2.75e1
  variant carriers: 1035
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 3.75e1
  variant carriers: 2862
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.25e1
  variant carriers: 588
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 9.75e1
  variant carriers: 7956
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 5.25e1
  variant carriers: 5537
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 7.75e1
  variant carriers: 3707
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 1762
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 7.25e1
  variant carriers: 4479
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 8.25e1
  variant carriers: 2817
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 4.75e1
  variant carriers: 4858
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.25e1
  variant carriers: 1645
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 4.25e1
  variant carriers: 3850
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 6.25e1
  variant carriers: 196
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.25e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 6.75e1
  variant carriers: 246
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 60665
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

9-129831678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831678
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831678
    reference: chr 9
allele count: 4
allele frequency: 3.356211508449262e-5
allele num: 119182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.926C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+43C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+43C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+43C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+43C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+43C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+43C>T
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12989
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

9-129831679-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831679
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831679
    reference: chr 9
allele count: 54
allele frequency: 4.536214109305959e-4
allele num: 119042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+44G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+44G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+44G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+44G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.927G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+44G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+44G>A
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25635
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5269
  bin: 9.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32862
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 2
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

9-129831680-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831680
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831680
    reference: chr 9
allele count: 1
allele frequency: 8.406610958858046e-6
allele num: 118954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+45G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.928G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+45G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+45G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+45G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+45G>A
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+45G>A
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5209
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

9-129831680-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831680
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831680
    reference: chr 9
allele count: 1
allele frequency: 8.406610958858046e-6
allele num: 118954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+45G>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+45G>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+45G>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+45G>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+45G>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.928G>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+45G>T
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8790
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

9-129831687-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831687
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831687
    reference: chr 9
allele count: 1
allele frequency: 8.452085129401424e-6
allele num: 118314
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+52A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+52A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+52A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+52A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+52A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+52A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.935A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11681
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5194
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-129831693-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831693
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831693
    reference: chr 9
allele count: 1
allele frequency: 8.490405841399219e-6
allele num: 117780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+58T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+58T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+58T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+58T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+58T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.941T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+58T>C
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

9-129831704-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831704
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831704
    reference: chr 9
allele count: 21
allele frequency: 1.805395553568665e-4
allele num: 116318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+69T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+69T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+69T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+69T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+69T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.952T>C
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+69T>C
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15461
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5199
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

9-129831709-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831709
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831709
    reference: chr 9
allele count: 1
allele frequency: 8.639308855291577e-6
allele num: 115750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+74A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+74A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.957A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+74A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+74A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+74A>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+74A>G
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12298
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

9-129831712-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129831712
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129831712
    reference: chr 9
allele count: 1
allele frequency: 8.701251239928301e-6
allele num: 114926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+77T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000373439
  gene symbol: RALGPS1
  hgvsc: ENST00000373439.2:n.960T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+77T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+77T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl transcript: ENST00000477700
  gene symbol: RALGPS1
  hgvsc: ENST00000477700.1:n.297+77T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+77T>G
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+77T>G
  variant of: http://identifiers.org/hgnc/16851
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5306
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

9-129851168-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 129851168
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 129851168
    reference: chr 9
allele count: 3
allele frequency: 2.477005135657315e-5
allele num: 121114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000415630
  ensembl transcript: ENST00000424082
  gene symbol: RALGPS1
  hgvsc: ENST00000424082.2:c.610+19533C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136859
  ensembl protein: ENSP00000362516
  ensembl transcript: ENST00000373417
  gene symbol: ANGPTL2
  hgvsc: ENST00000373417.1:c.*50G>A
  variant of: http://identifiers.org/hgnc/490
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136859
  ensembl protein: ENSP00000362524
  ensembl transcript: ENST00000373425
  gene symbol: ANGPTL2
  hgvsc: ENST00000373425.3:c.*50G>A
  variant of: http://identifiers.org/hgnc/490
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000377590
  ensembl transcript: ENST00000394022
  gene symbol: RALGPS1
  hgvsc: ENST00000394022.3:c.610+19533C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362535
  ensembl transcript: ENST00000373436
  gene symbol: RALGPS1
  hgvsc: ENST00000373436.1:c.610+19533C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000259351
  ensembl transcript: ENST00000259351
  gene symbol: RALGPS1
  hgvsc: ENST00000259351.5:c.610+19533C>T
  variant of: http://identifiers.org/hgnc/16851
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136828
  ensembl protein: ENSP00000362533
  ensembl transcript: ENST00000373434
  gene symbol: RALGPS1
  hgvsc: ENST00000373434.1:c.610+19533C>T
  variant of: http://identifiers.org/hgnc/16851
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12943
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19333
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2443
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1523
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.733307377846993e-5
allele num: 10274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.171896e6

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.106e0

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036467980445146e-5
allele num: 65866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-1

QD
type: SiteQuality
SIO_000300: 1.691e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

FS
type: SiteQuality
SIO_000300: 3.293e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

VQSLOD
type: SiteQuality
SIO_000300: -1.352e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

DP
type: SiteQuality
SIO_000300: 2.173405e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.735202492211838e-5
allele num: 10272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.07146109711302e-5
allele num: 65882
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.023e0

DP
type: SiteQuality
SIO_000300: 2.184562e6

QD
type: SiteQuality
SIO_000300: 1.565e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2171
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.188212927756654e-4
allele num: 8416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

QD
type: SiteQuality
SIO_000300: 1.432e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

DP
type: SiteQuality
SIO_000300: 2.18674e6

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3337
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17539
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variant carriers: 6

GenotypeQuality
all individuals: 752
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.364421939904794e-4
allele num: 65962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.936e0

QD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.205447e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.725e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 437
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 871
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variant carriers: 0

GenotypeQuality
all individuals: 39
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2218
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GenotypeQuality
all individuals: 17545
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514967882680887e-5
allele num: 66008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.436e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -3.207e0

DP
type: SiteQuality
SIO_000300: 2.212095e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.58e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3333
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514325519413653e-5
allele num: 66036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.319e0

MQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.220433e6

MQ
type: SiteQuality
SIO_000300: 6.016e1

QD
type: SiteQuality
SIO_000300: 1.137e1

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.502e1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.248964e6

FS
type: SiteQuality
SIO_000300: 1.731e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.59e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 4
allele frequency: 3.863987635239567e-4
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.250607e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6491
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 83
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 17586
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GenotypeQuality
all individuals: 74
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
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allele count: 0
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European (Finnish)
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African
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South Asian
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Finnish)
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allele frequency: 9.077155824508321e-4
allele num: 6610
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 6.010157165609881e-5
allele num: 66554
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South Asian
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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num of homozygotes: 0

European (Finnish)
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Other
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Latino
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African
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European (Non-Finnish)
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allele frequency: 4.507617874207411e-5
allele num: 66554
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ReadPosRankSum
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QD
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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SIO_000300: -2.41e-1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 9.619084263178146e-5
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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DP
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 66734
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Latino
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East Asian
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Other
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MQRankSum
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FS
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10406
num of homozygotes: 0

South Asian
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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QD
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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Latino
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.481e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.821e0

VQSLOD
type: SiteQuality
SIO_000300: -9.232e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 2.257157e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.212121212121212e-4
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: 1.23e0

BaseQRankSum
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SIO_000300: 3.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.875e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.498275396658768e-5
allele num: 66682
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.244e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 2.255201e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.499175090740018e-5
allele num: 66674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.304489416143289e-4
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.11e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.59e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 906
num of homozygotes: 0

South Asian
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allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

East Asian
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allele frequency: 1.047242262043286e-3
allele num: 8594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.129e0

MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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Latino
type: Population
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Other
type: Population
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allele num: 908
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.638946218283356e-3
allele num: 16474
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African
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allele frequency: 0.0e0
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
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allele frequency: 9.94431185361973e-5
allele num: 10056
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64100
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-2

QD
type: SiteQuality
SIO_000300: 1.617e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 1.711384e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557389814670612e-5
allele num: 64210
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.25e1

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.725841e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.938382031405287e-5
allele num: 10062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64148
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.676e0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

DP
type: SiteQuality
SIO_000300: 1.753098e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55724430048586e-5
allele num: 64216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.477e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.209e0

MQ
type: SiteQuality
SIO_000300: 6.026e1

MQRankSum
type: SiteQuality
SIO_000300: -1.556e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 4.56e0

QD
type: SiteQuality
SIO_000300: 1.113e1

DP
type: SiteQuality
SIO_000300: 1.758556e6

VQSLOD
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 506
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GenotypeQuality
all individuals: 1531
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.687174000267486e-5
allele num: 14954
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.102e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 8.746e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.784467e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.406e0

QD
type: SiteQuality
SIO_000300: 4.43e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550051151688006e-5
allele num: 64514
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.934933544931561e-4
allele num: 10082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.798026e6

QD
type: SiteQuality
SIO_000300: 1.605e1

VQSLOD
type: SiteQuality
SIO_000300: 5.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.616382162233691e-5
allele num: 15114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.305e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.903e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.806782e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 26

South Asian
type: Population
allele count: 1
allele frequency: 6.472491909385113e-5
allele num: 15450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 25
allele frequency: 2.468404423380727e-3
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64976
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.467e1

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.84047e6

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.078059591233686e-5
allele num: 64976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15450
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African
type: Population
allele count: 1
allele frequency: 9.873617693522907e-5
allele num: 10128
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 360
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.600239212439047e-5
allele num: 65214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15668
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.058e0

MQ
type: SiteQuality
SIO_000300: 6.023e1

MQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.78e-1

DP
type: SiteQuality
SIO_000300: 1.854188e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517496737382015e-5
allele num: 65898
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.643e-1

FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -4.221e0

MQ
type: SiteQuality
SIO_000300: 6.027e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.711e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

DP
type: SiteQuality
SIO_000300: 1.883809e6

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.902067e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

FS
type: SiteQuality
SIO_000300: 3.062e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

BaseQRankSum
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SIO_000300: 3.91e0

MQ
type: SiteQuality
SIO_000300: 6.019e1

QD
type: SiteQuality
SIO_000300: 1.252e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.51426507764536e-5
allele num: 66456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.356e0

FS
type: SiteQuality
SIO_000300: 1.1485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.445e0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 1.904872e6

QD
type: SiteQuality
SIO_000300: 9.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.326e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.906383e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.52e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.444e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.172e1

BaseQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.999880002399952e-5
allele num: 66668
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.071e0

MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.346e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.001e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25863
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Other
type: Population
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allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

FS
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.913048e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.278e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.89e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 1.805e0

DP
type: SiteQuality
SIO_000300: 1.913178e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e0

VQSLOD
type: SiteQuality
SIO_000300: 6.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e-1

DP
type: SiteQuality
SIO_000300: 1.913545e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.329e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.232e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 1.116e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.913744e6

MQRankSum
type: SiteQuality
SIO_000300: -1.216e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

FS
type: SiteQuality
SIO_000300: 2.747e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

QD
type: SiteQuality
SIO_000300: 1.203e1

DP
type: SiteQuality
SIO_000300: 1.913969e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 22

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.559721802237678e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.397865899349579e-4
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.105e0

QD
type: SiteQuality
SIO_000300: 1.31e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.915736e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQRankSum
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DP
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VQSLOD
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SIO_000300: -5.579e-1

BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.241396025206011e-4
allele num: 16504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.915733e6

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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MQ
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FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.112e1

ReadPosRankSum
type: SiteQuality
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.812e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

FS
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.006e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.915791e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.493106342165208e-5
allele num: 66728
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.915704e6

FS
type: SiteQuality
SIO_000300: 5.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.12e1

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.914351e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: -7.089e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

FS
type: SiteQuality
SIO_000300: 1.829e0

QD
type: SiteQuality
SIO_000300: 2.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995203836930456e-5
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

DP
type: SiteQuality
SIO_000300: 1.914454e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

QD
type: SiteQuality
SIO_000300: 1.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

FS
type: SiteQuality
SIO_000300: 2.818e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 7.135e0

MQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.539e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.254e0

DP
type: SiteQuality
SIO_000300: 1.91447e6

VQSLOD
type: SiteQuality
SIO_000300: 1.19e-1

GenotypeQuality
all individuals: 72
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4556
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3071
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 2.713e0

DP
type: SiteQuality
SIO_000300: 1.915539e6

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 15

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 425

GenotypeQuality
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bin: 3.75e1
variant carriers: 42

GenotypeQuality
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variant carriers: 35

GenotypeQuality
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variant carriers: 355

GenotypeQuality
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bin: 5.25e1
variant carriers: 140

GenotypeQuality
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variant carriers: 46

GenotypeQuality
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bin: 9.25e1
variant carriers: 571

GenotypeQuality
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variant carriers: 58025

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 261

East Asian
type: Population
allele count: 8636
allele frequency: 1.0e0
allele num: 8636
num of homozygotes: 4318

European (Finnish)
type: Population
allele count: 6614
allele frequency: 1.0e0
allele num: 6614
num of homozygotes: 3307

Latino
type: Population
allele count: 11576
allele frequency: 1.0e0
allele num: 11576
num of homozygotes: 5788

South Asian
type: Population
allele count: 16506
allele frequency: 1.0e0
allele num: 16506
num of homozygotes: 8253

European (Non-Finnish)
type: Population
allele count: 66716
allele frequency: 1.0e0
allele num: 66716
num of homozygotes: 33358

African
type: Population
allele count: 10382
allele frequency: 9.994224104736235e-1
allele num: 10388
num of homozygotes: 5188

Other
type: Population
allele count: 906
allele frequency: 1.0e0
allele num: 906
num of homozygotes: 453

DP
type: SiteQuality
SIO_000300: 4.194509e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.159e0

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.191e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

QD
type: SiteQuality
SIO_000300: 3.367e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 172
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522950869604947e-5
allele num: 65662
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.367984844896993e-4
allele num: 8446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16106
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.833e1

FS
type: SiteQuality
SIO_000300: 1.841e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e-1

ReadPosRankSum
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SIO_000300: 2.35e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

DP
type: SiteQuality
SIO_000300: 1.852048e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.86312259346665e-4
allele num: 16102
num of homozygotes: 0

East Asian
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allele count: 50
allele frequency: 5.925574780753733e-3
allele num: 8438
num of homozygotes: 2

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
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Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.063e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.65e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.187930624851509e-4
allele num: 8418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65524
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

BaseQRankSum
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SIO_000300: -2.451e0

MQRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.159e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.835175e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5209
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GenotypeQuality
all individuals: 758
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
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GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.992006394884092e-5
allele num: 10008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

DP
type: SiteQuality
SIO_000300: 1.835175e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.00928542591845e-4
allele num: 9908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.156e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.807e0

DP
type: SiteQuality
SIO_000300: 1.789906e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e0

QD
type: SiteQuality
SIO_000300: 9.4e0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5190
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1548
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2750
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.015640869388584e-4
allele num: 9846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

QD
type: SiteQuality
SIO_000300: 7.81e0

DP
type: SiteQuality
SIO_000300: 1.73363e6

VQSLOD
type: SiteQuality
SIO_000300: -1.306e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
all individuals: 19294
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4735
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.119346185039616e-4
allele num: 64116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.866820358219543e-5
allele num: 11278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.585e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

DP
type: SiteQuality
SIO_000300: 1.606213e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

GenotypeQuality
all individuals: 1584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2483
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5182
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567889620570712e-5
allele num: 63780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.111e0

QD
type: SiteQuality
SIO_000300: 1.247e1

DP
type: SiteQuality
SIO_000300: 1.576221e6

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

GenotypeQuality
all individuals: 745
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5177
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 459
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.449116471043467e-5
allele num: 15506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.671e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.388e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 1.5628e6

VQSLOD
type: SiteQuality
SIO_000300: -1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -1.595e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

GenotypeQuality
all individuals: 3135
bin: 7.25e1
variant carriers: 0