http://identifiers.org/exac.variant/8-2818713-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818713
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818713
    reference: chr 8
allele count: 1
allele frequency: 8.604371020478403e-6
allele num: 116220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9655G>T
  hgvsp: ENSP00000473359.1:p.Asp3219Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7904G>T
  hgvsp: ENSP00000334828.6:p.Asp2636Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9655G>T
  hgvsp: ENSP00000430733.1:p.Asp3219Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9121G>T
  hgvsp: ENSP00000446243.1:p.Asp3041Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9124G>T
  hgvsp: ENSP00000473617.1:p.Asp3042Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9124G>T
  hgvsp: ENSP00000383047.3:p.Asp3042Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9652G>T
  hgvsp: ENSP00000441462.1:p.Asp3218Tyr
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp3218Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

8-2818723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818723
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818723
    reference: chr 8
allele count: 3
allele frequency: 2.613377005766852e-5
allele num: 114794
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9114C>T
  hgvsp: ENST00000400186.3:c.9114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9111C>T
  hgvsp: ENST00000542608.1:c.9111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9642C>T
  hgvsp: ENST00000537824.1:c.9642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9645C>T
  hgvsp: ENST00000520002.1:c.9645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7894C>T
  hgvsp: ENST00000335551.7:c.7894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9114C>T
  hgvsp: ENST00000602723.1:c.9114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9645C>T
  hgvsp: ENST00000602557.1:c.9645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4724
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn3214Asn
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

8-2818724-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818724
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818724
    reference: chr 8
allele count: 2
allele frequency: 1.742281692103979e-5
allele num: 114792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9110A>G
  hgvsp: ENSP00000446243.1:p.Asn3037Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9113A>G
  hgvsp: ENSP00000383047.3:p.Asn3038Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9644A>G
  hgvsp: ENSP00000430733.1:p.Asn3215Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9113A>G
  hgvsp: ENSP00000473617.1:p.Asn3038Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7893A>G
  hgvsp: ENSP00000334828.6:p.Asn2632Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9641A>G
  hgvsp: ENSP00000441462.1:p.Asn3214Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9644A>G
  hgvsp: ENSP00000473359.1:p.Asn3215Ser
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn3214Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

8-2818725-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818725
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818725
    reference: chr 8
allele count: 6
allele frequency: 5.232953653473809e-5
allele num: 114658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7892A>G
  hgvsp: ENSP00000334828.6:p.Asn2632Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9109A>G
  hgvsp: ENSP00000446243.1:p.Asn3037Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9643A>G
  hgvsp: ENSP00000430733.1:p.Asn3215Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9640A>G
  hgvsp: ENSP00000441462.1:p.Asn3214Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9643A>G
  hgvsp: ENSP00000473359.1:p.Asn3215Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9112A>G
  hgvsp: ENSP00000383047.3:p.Asn3038Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9112A>G
  hgvsp: ENSP00000473617.1:p.Asn3038Asp
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn3214Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

8-2818730-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818730
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818730
    reference: chr 8
allele count: 1
allele frequency: 8.812436109838204e-6
allele num: 113476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9107C>G
  hgvsp: ENSP00000473617.1:p.Ala3036Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9107C>G
  hgvsp: ENSP00000383047.3:p.Ala3036Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9638C>G
  hgvsp: ENSP00000430733.1:p.Ala3213Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7887C>G
  hgvsp: ENSP00000334828.6:p.Ala2630Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9104C>G
  hgvsp: ENSP00000446243.1:p.Ala3035Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9635C>G
  hgvsp: ENSP00000441462.1:p.Ala3212Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9638C>G
  hgvsp: ENSP00000473359.1:p.Ala3213Gly
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala3212Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

8-2818745-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818745
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818745
    reference: chr 8
allele count: 1
allele frequency: 9.181724695166739e-6
allele num: 108912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-9A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-9A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-9A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-9A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-9A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-9A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-9A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

8-2818763-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818763
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818763
    reference: chr 8
allele count: 1
allele frequency: 9.719495363800712e-6
allele num: 102886
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-27C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-27C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-27C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-27C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-27C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-27C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-27C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12539
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/8-2818764-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818764
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818764
    reference: chr 8
allele count: 1
allele frequency: 9.71534052268532e-6
allele num: 102930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-28T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-28T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-28T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-28T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-28T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-28T>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-28T>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

8-2818765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818765
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818765
    reference: chr 8
allele count: 6
allele frequency: 5.846813486649776e-5
allele num: 102620
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-29C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-29C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-29C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-29C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-29C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-29C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-29C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13736
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7047
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

8-2818766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818766
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818766
    reference: chr 8
allele count: 1
allele frequency: 9.780525018582997e-6
allele num: 102244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-30C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-30C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-30C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-30C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-30C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-30C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-30C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20208
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7239
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4503
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

8-2818767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818767
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818767
    reference: chr 8
allele count: 1
allele frequency: 9.826657757163633e-6
allele num: 101764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-31C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-31C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-31C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-31C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-31C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-31C>T
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-31C>T
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4707
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

8-2818775-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818775
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818775
    reference: chr 8
allele count: 6
allele frequency: 6.131207847946045e-5
allele num: 97860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-39A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-39A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-39A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-39A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-39A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-39A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-39A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12257
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

8-2818777-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818777
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818777
    reference: chr 8
allele count: 1
allele frequency: 1.03288712609486e-5
allele num: 96816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-41A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-41A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-41A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-41A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-41A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-41A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-41A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9870
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14022
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

8-2818779-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818779
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818779
    reference: chr 8
allele count: 2
allele frequency: 2.098900176307615e-5
allele num: 95288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-43C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-43C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-43C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-43C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-43C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-43C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-43C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6010
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8016
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

8-2818783-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2818783
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2818783
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 93020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9632-47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9629-47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9098-47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9101-47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7881-47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9101-47A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9632-47A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6024
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4473
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

8-2819956-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819956
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819956
    reference: chr 8
allele count: 1
allele frequency: 8.545109633756601e-6
allele num: 117026
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9628+32T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9631+32T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9631+32T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9100+32T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9097+32T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9100+32T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7880+32T>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17378
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6217
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

8-2819957-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819957
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819957
    reference: chr 8
allele count: 56
allele frequency: 4.782237403928266e-4
allele num: 117100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9631+31C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9628+31C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9100+31C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9631+31C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7880+31C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9097+31C>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9100+31C>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17511
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25458
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 9.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

8-2819964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819964
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819964
    reference: chr 8
allele count: 2
allele frequency: 1.702272533832667e-5
allele num: 117490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9631+24G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9100+24G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7880+24G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9628+24G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9100+24G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9097+24G>A
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9631+24G>A
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18125
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6428
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

8-2819975-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819975
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819975
    reference: chr 8
allele count: 2
allele frequency: 1.687023415885013e-5
allele num: 118552
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9628+13A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7880+13A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9100+13A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9100+13A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9097+13A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9631+13A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9631+13A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6601
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-2819976-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819976
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819976
    reference: chr 8
allele count: 84
allele frequency: 7.078452852447964e-4
allele num: 118670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7880+12C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9100+12C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9631+12C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9100+12C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9097+12C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9631+12C>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9628+12C>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29126
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18944
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

8-2819980-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819980
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819980
    reference: chr 8
allele count: 1
allele frequency: 8.407741848694278e-6
allele num: 118938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7880+8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9631+8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9631+8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9100+8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9628+8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9097+8T>C
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9100+8T>C
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40715
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: c.9628+8T>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

8-2819981-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819981
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819981
    reference: chr 8
allele count: 4
allele frequency: 3.361344537815126e-5
allele num: 119000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9100+7A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9631+7A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9631+7A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9100+7A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9097+7A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7880+7A>G
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9628+7A>G
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
hgvs: c.9628+7A>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS

8-2819988-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819988
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819988
    reference: chr 8
allele count: 1
allele frequency: 8.37058242512514e-6
allele num: 119466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9631G>C
  hgvsp: ENSP00000430733.1:p.Asp3211His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7880G>C
  hgvsp: ENSP00000334828.6:p.Asp2628His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9631G>C
  hgvsp: ENSP00000473359.1:p.Asp3211His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9097G>C
  hgvsp: ENSP00000446243.1:p.Asp3033His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9100G>C
  hgvsp: ENSP00000473617.1:p.Asp3034His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9628G>C
  hgvsp: ENSP00000441462.1:p.Asp3210His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9100G>C
  hgvsp: ENSP00000383047.3:p.Asp3034His
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp3210His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

8-2819991-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819991
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819991
    reference: chr 8
allele count: 5
allele frequency: 4.17578379461825e-5
allele num: 119738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9097A>T
  hgvsp: ENSP00000473617.1:p.Ile3033Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9625A>T
  hgvsp: ENSP00000441462.1:p.Ile3209Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9628A>T
  hgvsp: ENSP00000473359.1:p.Ile3210Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7877A>T
  hgvsp: ENSP00000334828.6:p.Ile2627Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9097A>T
  hgvsp: ENSP00000383047.3:p.Ile3033Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9628A>T
  hgvsp: ENSP00000430733.1:p.Ile3210Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9094A>T
  hgvsp: ENSP00000446243.1:p.Ile3032Phe
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19614
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41775
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile3209Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

8-2819991-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2819991
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2819991
    reference: chr 8
allele count: 1
allele frequency: 8.351567589236499e-6
allele num: 119738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9097A>G
  hgvsp: ENSP00000473617.1:p.Ile3033Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9097A>G
  hgvsp: ENSP00000383047.3:p.Ile3033Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9625A>G
  hgvsp: ENSP00000441462.1:p.Ile3209Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7877A>G
  hgvsp: ENSP00000334828.6:p.Ile2627Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9094A>G
  hgvsp: ENSP00000446243.1:p.Ile3032Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9628A>G
  hgvsp: ENSP00000473359.1:p.Ile3210Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9628A>G
  hgvsp: ENSP00000430733.1:p.Ile3210Val
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6765
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41775
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile3209Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

8-2820004-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820004
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820004
    reference: chr 8
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9612A>G
  hgvsp: ENSP00000441462.1:p.Ile3204Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9084A>G
  hgvsp: ENSP00000383047.3:p.Ile3028Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9081A>G
  hgvsp: ENSP00000446243.1:p.Ile3027Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9615A>G
  hgvsp: ENSP00000473359.1:p.Ile3205Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9615A>G
  hgvsp: ENSP00000430733.1:p.Ile3205Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7864A>G
  hgvsp: ENSP00000334828.6:p.Ile2622Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9084A>G
  hgvsp: ENSP00000473617.1:p.Ile3028Met
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile3204Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

8-2820010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820010
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820010
    reference: chr 8
allele count: 2
allele frequency: 1.662427476601333e-5
allele num: 120306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9075C>T
  hgvsp: ENST00000542608.1:c.9075C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9078C>T
  hgvsp: ENST00000602723.1:c.9078C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9609C>T
  hgvsp: ENST00000520002.1:c.9609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9606C>T
  hgvsp: ENST00000537824.1:c.9606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9609C>T
  hgvsp: ENST00000602557.1:c.9609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7858C>T
  hgvsp: ENST00000335551.7:c.7858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9078C>T
  hgvsp: ENST00000400186.3:c.9078C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser3202Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

8-2820016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820016
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820016
    reference: chr 8
allele count: 1
allele frequency: 8.306337735692333e-6
allele num: 120390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9072G>A
  hgvsp: ENST00000400186.3:c.9072G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9600G>A
  hgvsp: ENST00000537824.1:c.9600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7852G>A
  hgvsp: ENST00000335551.7:c.7852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9072G>A
  hgvsp: ENST00000602723.1:c.9072G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9603G>A
  hgvsp: ENST00000602557.1:c.9603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9069G>A
  hgvsp: ENST00000542608.1:c.9069G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9603G>A
  hgvsp: ENST00000520002.1:c.9603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr3200Thr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

8-2820017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820017
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820017
    reference: chr 8
allele count: 2
allele frequency: 1.66096402351925e-5
allele num: 120412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9071C>T
  hgvsp: ENSP00000383047.3:p.Thr3024Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9599C>T
  hgvsp: ENSP00000441462.1:p.Thr3200Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9602C>T
  hgvsp: ENSP00000473359.1:p.Thr3201Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9071C>T
  hgvsp: ENSP00000473617.1:p.Thr3024Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9602C>T
  hgvsp: ENSP00000430733.1:p.Thr3201Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7851C>T
  hgvsp: ENSP00000334828.6:p.Thr2618Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9068C>T
  hgvsp: ENSP00000446243.1:p.Thr3023Met
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2317
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr3200Met
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

8-2820021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820021
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820021
    reference: chr 8
allele count: 1
allele frequency: 8.30357884248111e-6
allele num: 120430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9067G>A
  hgvsp: ENSP00000383047.3:p.Gly3023Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9598G>A
  hgvsp: ENSP00000473359.1:p.Gly3200Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9595G>A
  hgvsp: ENSP00000441462.1:p.Gly3199Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9064G>A
  hgvsp: ENSP00000446243.1:p.Gly3022Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7847G>A
  hgvsp: ENSP00000334828.6:p.Gly2617Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9598G>A
  hgvsp: ENSP00000430733.1:p.Gly3200Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9067G>A
  hgvsp: ENSP00000473617.1:p.Gly3023Ser
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly3199Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

8-2820022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820022
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820022
    reference: chr 8
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9597C>T
  hgvsp: ENST00000602557.1:c.9597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9063C>T
  hgvsp: ENST00000542608.1:c.9063C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9594C>T
  hgvsp: ENST00000537824.1:c.9594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9066C>T
  hgvsp: ENST00000602723.1:c.9066C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7846C>T
  hgvsp: ENST00000335551.7:c.7846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9597C>T
  hgvsp: ENST00000520002.1:c.9597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9066C>T
  hgvsp: ENST00000400186.3:c.9066C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp3198Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

8-2820024-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820024
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820024
    reference: chr 8
allele count: 6
allele frequency: 4.981154631643615e-5
allele num: 120454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9061G>C
  hgvsp: ENSP00000446243.1:p.Asp3021His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9595G>C
  hgvsp: ENSP00000430733.1:p.Asp3199His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9592G>C
  hgvsp: ENSP00000441462.1:p.Asp3198His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9064G>C
  hgvsp: ENSP00000383047.3:p.Asp3022His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9064G>C
  hgvsp: ENSP00000473617.1:p.Asp3022His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9595G>C
  hgvsp: ENSP00000473359.1:p.Asp3199His
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7844G>C
  hgvsp: ENSP00000334828.6:p.Asp2616His
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp3198His
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

8-2820031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820031
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820031
    reference: chr 8
allele count: 1
allele frequency: 8.300546175938376e-6
allele num: 120474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9057C>T
  hgvsp: ENST00000400186.3:c.9057C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9588C>T
  hgvsp: ENST00000520002.1:c.9588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7837C>T
  hgvsp: ENST00000335551.7:c.7837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9588C>T
  hgvsp: ENST00000602557.1:c.9588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9057C>T
  hgvsp: ENST00000602723.1:c.9057C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9585C>T
  hgvsp: ENST00000537824.1:c.9585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9054C>T
  hgvsp: ENST00000542608.1:c.9054C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20672
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys3195Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

8-2820036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820036
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820036
    reference: chr 8
allele count: 1
allele frequency: 8.300132802124834e-6
allele num: 120480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9052G>C
  hgvsp: ENSP00000473617.1:p.Val3018Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7832G>C
  hgvsp: ENSP00000334828.6:p.Val2612Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9052G>C
  hgvsp: ENSP00000383047.3:p.Val3018Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9580G>C
  hgvsp: ENSP00000441462.1:p.Val3194Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9049G>C
  hgvsp: ENSP00000446243.1:p.Val3017Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9583G>C
  hgvsp: ENSP00000430733.1:p.Val3195Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9583G>C
  hgvsp: ENSP00000473359.1:p.Val3195Leu
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val3194Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

8-2820042-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820042
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820042
    reference: chr 8
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9577A>G
  hgvsp: ENSP00000430733.1:p.Arg3193Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7826A>G
  hgvsp: ENSP00000334828.6:p.Arg2610Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9577A>G
  hgvsp: ENSP00000473359.1:p.Arg3193Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9046A>G
  hgvsp: ENSP00000473617.1:p.Arg3016Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9574A>G
  hgvsp: ENSP00000441462.1:p.Arg3192Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9046A>G
  hgvsp: ENSP00000383047.3:p.Arg3016Gly
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9043A>G
  hgvsp: ENSP00000446243.1:p.Arg3015Gly
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg3192Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

8-2820043-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820043
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820043
    reference: chr 8
allele count: 6926
allele frequency: 5.749340062756297e-2
allele num: 120466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7825C>A
  hgvsp: ENST00000335551.7:c.7825C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9045C>A
  hgvsp: ENST00000602723.1:c.9045C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9042C>A
  hgvsp: ENST00000542608.1:c.9042C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9573C>A
  hgvsp: ENST00000537824.1:c.9573C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9576C>A
  hgvsp: ENST00000602557.1:c.9576C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9045C>A
  hgvsp: ENST00000400186.3:c.9045C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9576C>A
  hgvsp: ENST00000520002.1:c.9576C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 421
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.25e1
  variant carriers: 766
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 767
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.25e1
  variant carriers: 761
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 3.25e1
  variant carriers: 479
genotype depth: GenotypeDepth
  all individuals: 27129
  bin: 2.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.75e1
  variant carriers: 668
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 558
genotype depth: GenotypeDepth
  all individuals: 19353
  bin: 2.75e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 8.25e1
  variant carriers: 21
hgvs: p.Ser3191Ser
num of homozygotes: 578
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

8-2820044-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820044
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820044
    reference: chr 8
allele count: 1
allele frequency: 8.300132802124834e-6
allele num: 120480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9575C>T
  hgvsp: ENSP00000473359.1:p.Ser3192Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9572C>T
  hgvsp: ENSP00000441462.1:p.Ser3191Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9044C>T
  hgvsp: ENSP00000473617.1:p.Ser3015Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7824C>T
  hgvsp: ENSP00000334828.6:p.Ser2609Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9575C>T
  hgvsp: ENSP00000430733.1:p.Ser3192Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9044C>T
  hgvsp: ENSP00000383047.3:p.Ser3015Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9041C>T
  hgvsp: ENSP00000446243.1:p.Ser3014Phe
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6966
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser3191Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

8-2820046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820046
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820046
    reference: chr 8
allele count: 8
allele frequency: 6.640326704073841e-5
allele num: 120476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9042C>T
  hgvsp: ENST00000602723.1:c.9042C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7822C>T
  hgvsp: ENST00000335551.7:c.7822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9039C>T
  hgvsp: ENST00000542608.1:c.9039C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9573C>T
  hgvsp: ENST00000602557.1:c.9573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9573C>T
  hgvsp: ENST00000520002.1:c.9573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9042C>T
  hgvsp: ENST00000400186.3:c.9042C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9570C>T
  hgvsp: ENST00000537824.1:c.9570C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser3190Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

8-2820049-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820049
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820049
    reference: chr 8
allele count: 3
allele frequency: 2.490081176646359e-5
allele num: 120478
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9570A>G
  hgvsp: ENST00000602557.1:c.9570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7819A>G
  hgvsp: ENST00000335551.7:c.7819A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9567A>G
  hgvsp: ENST00000537824.1:c.9567A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9039A>G
  hgvsp: ENST00000602723.1:c.9039A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9039A>G
  hgvsp: ENST00000400186.3:c.9039A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9036A>G
  hgvsp: ENST00000542608.1:c.9036A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9570A>G
  hgvsp: ENST00000520002.1:c.9570A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6964
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly3189Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

8-2820054-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820054
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820054
    reference: chr 8
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9031G>C
  hgvsp: ENSP00000446243.1:p.Val3011Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9034G>C
  hgvsp: ENSP00000473617.1:p.Val3012Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9565G>C
  hgvsp: ENSP00000430733.1:p.Val3189Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9034G>C
  hgvsp: ENSP00000383047.3:p.Val3012Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9562G>C
  hgvsp: ENSP00000441462.1:p.Val3188Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7814G>C
  hgvsp: ENSP00000334828.6:p.Val2606Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9565G>C
  hgvsp: ENSP00000473359.1:p.Val3189Leu
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val3188Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

8-2820054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820054
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820054
    reference: chr 8
allele count: 5
allele frequency: 4.151582583280746e-5
allele num: 120436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9031G>A
  hgvsp: ENSP00000446243.1:p.Val3011Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9562G>A
  hgvsp: ENSP00000441462.1:p.Val3188Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9565G>A
  hgvsp: ENSP00000430733.1:p.Val3189Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9565G>A
  hgvsp: ENSP00000473359.1:p.Val3189Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7814G>A
  hgvsp: ENSP00000334828.6:p.Val2606Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9034G>A
  hgvsp: ENSP00000473617.1:p.Val3012Met
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9034G>A
  hgvsp: ENSP00000383047.3:p.Val3012Met
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6927
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val3188Met
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

8-2820055-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820055
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820055
    reference: chr 8
allele count: 2
allele frequency: 1.660991611992359e-5
allele num: 120410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9561C>T
  hgvsp: ENST00000537824.1:c.9561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7813C>T
  hgvsp: ENST00000335551.7:c.7813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9033C>T
  hgvsp: ENST00000400186.3:c.9033C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9564C>T
  hgvsp: ENST00000602557.1:c.9564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9030C>T
  hgvsp: ENST00000542608.1:c.9030C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9033C>T
  hgvsp: ENST00000602723.1:c.9033C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9564C>T
  hgvsp: ENST00000520002.1:c.9564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6907
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu3187Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

8-2820057-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820057
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820057
    reference: chr 8
allele count: 1
allele frequency: 8.304268393954492e-6
allele num: 120420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7811C>G
  hgvsp: ENSP00000334828.6:p.Leu2605Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9562C>G
  hgvsp: ENSP00000473359.1:p.Leu3188Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9028C>G
  hgvsp: ENSP00000446243.1:p.Leu3010Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9031C>G
  hgvsp: ENSP00000473617.1:p.Leu3011Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9559C>G
  hgvsp: ENSP00000441462.1:p.Leu3187Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9031C>G
  hgvsp: ENSP00000383047.3:p.Leu3011Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9562C>G
  hgvsp: ENSP00000430733.1:p.Leu3188Val
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6911
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu3187Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

8-2820058-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820058
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820058
    reference: chr 8
allele count: 7
allele frequency: 5.813180972628222e-5
allele num: 120416
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9558A>T
  hgvsp: ENST00000537824.1:c.9558A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9561A>T
  hgvsp: ENST00000520002.1:c.9561A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9030A>T
  hgvsp: ENST00000400186.3:c.9030A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9030A>T
  hgvsp: ENST00000602723.1:c.9030A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9561A>T
  hgvsp: ENST00000602557.1:c.9561A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7810A>T
  hgvsp: ENST00000335551.7:c.7810A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9027A>T
  hgvsp: ENST00000542608.1:c.9027A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22195
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile3186Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-2820062-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820062
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820062
    reference: chr 8
allele count: 1
allele frequency: 8.305647840531562e-6
allele num: 120400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9557T>C
  hgvsp: ENSP00000473359.1:p.Phe3186Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9554T>C
  hgvsp: ENSP00000441462.1:p.Phe3185Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9026T>C
  hgvsp: ENSP00000473617.1:p.Phe3009Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9026T>C
  hgvsp: ENSP00000383047.3:p.Phe3009Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7806T>C
  hgvsp: ENSP00000334828.6:p.Phe2603Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9023T>C
  hgvsp: ENSP00000446243.1:p.Phe3008Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9557T>C
  hgvsp: ENSP00000430733.1:p.Phe3186Ser
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe3185Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

8-2820064-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820064
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820064
    reference: chr 8
allele count: 1
allele frequency: 8.30675172780436e-6
allele num: 120384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7804A>G
  hgvsp: ENST00000335551.7:c.7804A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9555A>G
  hgvsp: ENST00000602557.1:c.9555A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9552A>G
  hgvsp: ENST00000537824.1:c.9552A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9021A>G
  hgvsp: ENST00000542608.1:c.9021A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9555A>G
  hgvsp: ENST00000520002.1:c.9555A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9024A>G
  hgvsp: ENST00000400186.3:c.9024A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9024A>G
  hgvsp: ENST00000602723.1:c.9024A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6913
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro3184Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

8-2820070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820070
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820070
    reference: chr 8
allele count: 1
allele frequency: 8.310065150910783e-6
allele num: 120336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9015A>G
  hgvsp: ENST00000542608.1:c.9015A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9549A>G
  hgvsp: ENST00000602557.1:c.9549A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9546A>G
  hgvsp: ENST00000537824.1:c.9546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9018A>G
  hgvsp: ENST00000400186.3:c.9018A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9018A>G
  hgvsp: ENST00000602723.1:c.9018A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9549A>G
  hgvsp: ENST00000520002.1:c.9549A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7798A>G
  hgvsp: ENST00000335551.7:c.7798A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys3182Lys
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

8-2820076-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820076
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820076
    reference: chr 8
allele count: 346
allele frequency: 2.876669050034088e-3
allele num: 120278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9009G>A
  hgvsp: ENST00000542608.1:c.9009G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9012G>A
  hgvsp: ENST00000602723.1:c.9012G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9540G>A
  hgvsp: ENST00000537824.1:c.9540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9543G>A
  hgvsp: ENST00000520002.1:c.9543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9543G>A
  hgvsp: ENST00000602557.1:c.9543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7792G>A
  hgvsp: ENST00000335551.7:c.7792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9012G>A
  hgvsp: ENST00000400186.3:c.9012G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 27703
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 22123
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 337
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln3180Gln
num of homozygotes: 6
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

8-2820077-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820077
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820077
    reference: chr 8
allele count: 2
allele frequency: 1.662897432486364e-5
allele num: 120272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9008A>T
  hgvsp: ENSP00000446243.1:p.Gln3003Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9542A>T
  hgvsp: ENSP00000430733.1:p.Gln3181Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9542A>T
  hgvsp: ENSP00000473359.1:p.Gln3181Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9011A>T
  hgvsp: ENSP00000473617.1:p.Gln3004Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7791A>T
  hgvsp: ENSP00000334828.6:p.Gln2598Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9011A>T
  hgvsp: ENSP00000383047.3:p.Gln3004Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9539A>T
  hgvsp: ENSP00000441462.1:p.Gln3180Leu
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln3180Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

8-2820079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820079
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820079
    reference: chr 8
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9540C>T
  hgvsp: ENST00000602557.1:c.9540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9009C>T
  hgvsp: ENST00000400186.3:c.9009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9009C>T
  hgvsp: ENST00000602723.1:c.9009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9006C>T
  hgvsp: ENST00000542608.1:c.9006C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9540C>T
  hgvsp: ENST00000520002.1:c.9540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7789C>T
  hgvsp: ENST00000335551.7:c.7789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9537C>T
  hgvsp: ENST00000537824.1:c.9537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe3179Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-2820084-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820084
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820084
    reference: chr 8
allele count: 97
allele frequency: 8.071763805212529e-4
allele num: 120172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9001T>G
  hgvsp: ENSP00000446243.1:p.Phe3001Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9004T>G
  hgvsp: ENSP00000473617.1:p.Phe3002Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7784T>G
  hgvsp: ENSP00000334828.6:p.Phe2596Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9535T>G
  hgvsp: ENSP00000473359.1:p.Phe3179Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9532T>G
  hgvsp: ENSP00000441462.1:p.Phe3178Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9004T>G
  hgvsp: ENSP00000383047.3:p.Phe3002Val
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9535T>G
  hgvsp: ENSP00000430733.1:p.Phe3179Val
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27485
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22240
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe3178Val
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

8-2820085-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820085
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820085
    reference: chr 8
allele count: 2
allele frequency: 1.664835347784104e-5
allele num: 120132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7783C>G
  hgvsp: ENST00000335551.7:c.7783C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.9003C>G
  hgvsp: ENST00000602723.1:c.9003C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9531C>G
  hgvsp: ENST00000537824.1:c.9531C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.9000C>G
  hgvsp: ENST00000542608.1:c.9000C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.9003C>G
  hgvsp: ENST00000400186.3:c.9003C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9534C>G
  hgvsp: ENST00000602557.1:c.9534C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9534C>G
  hgvsp: ENST00000520002.1:c.9534C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42785
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val3177Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

8-2820090-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820090
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820090
    reference: chr 8
allele count: 2
allele frequency: 1.665889251682548e-5
allele num: 120056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9529G>A
  hgvsp: ENSP00000430733.1:p.Glu3177Lys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7778G>A
  hgvsp: ENSP00000334828.6:p.Glu2594Lys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8998G>A
  hgvsp: ENSP00000383047.3:p.Glu3000Lys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9526G>A
  hgvsp: ENSP00000441462.1:p.Glu3176Lys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9529G>A
  hgvsp: ENSP00000473359.1:p.Glu3177Lys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8998G>A
  hgvsp: ENSP00000473617.1:p.Glu3000Lys
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8995G>A
  hgvsp: ENSP00000446243.1:p.Glu2999Lys
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Glu3176Lys
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

8-2820091-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820091
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820091
    reference: chr 8
allele count: 13
allele frequency: 1.083026475831848e-4
allele num: 120034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8994C>T
  hgvsp: ENST00000542608.1:c.8994C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7777C>T
  hgvsp: ENST00000335551.7:c.7777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9528C>T
  hgvsp: ENST00000520002.1:c.9528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9525C>T
  hgvsp: ENST00000537824.1:c.9525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8997C>T
  hgvsp: ENST00000400186.3:c.8997C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8997C>T
  hgvsp: ENST00000602723.1:c.8997C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9528C>T
  hgvsp: ENST00000602557.1:c.9528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27438
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser3175Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

8-2820096-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820096
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820096
    reference: chr 8
allele count: 1
allele frequency: 8.334722453742291e-6
allele num: 119980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7772A>G
  hgvsp: ENSP00000334828.6:p.Lys2592Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8989A>G
  hgvsp: ENSP00000446243.1:p.Lys2997Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9523A>G
  hgvsp: ENSP00000473359.1:p.Lys3175Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9520A>G
  hgvsp: ENSP00000441462.1:p.Lys3174Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9523A>G
  hgvsp: ENSP00000430733.1:p.Lys3175Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8992A>G
  hgvsp: ENSP00000473617.1:p.Lys2998Glu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8992A>G
  hgvsp: ENSP00000383047.3:p.Lys2998Glu
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys3174Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

8-2820097-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820097
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820097
    reference: chr 8
allele count: 2
allele frequency: 1.666861133798943e-5
allele num: 119986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9522T>C
  hgvsp: ENST00000520002.1:c.9522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8991T>C
  hgvsp: ENST00000602723.1:c.8991T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7771T>C
  hgvsp: ENST00000335551.7:c.7771T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8991T>C
  hgvsp: ENST00000400186.3:c.8991T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9522T>C
  hgvsp: ENST00000602557.1:c.9522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9519T>C
  hgvsp: ENST00000537824.1:c.9519T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8988T>C
  hgvsp: ENST00000542608.1:c.8988T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr3173Tyr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

8-2820109-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820109
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820109
    reference: chr 8
allele count: 1
allele frequency: 8.352125615969264e-6
allele num: 119730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8976A>T
  hgvsp: ENSP00000446243.1:p.Lys2992Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7759A>T
  hgvsp: ENSP00000334828.6:p.Lys2587Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8979A>T
  hgvsp: ENSP00000383047.3:p.Lys2993Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8979A>T
  hgvsp: ENSP00000473617.1:p.Lys2993Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9507A>T
  hgvsp: ENSP00000441462.1:p.Lys3169Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9510A>T
  hgvsp: ENSP00000473359.1:p.Lys3170Asn
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9510A>T
  hgvsp: ENSP00000430733.1:p.Lys3170Asn
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27182
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42772
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys3169Asn
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

8-2820112-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820112
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820112
    reference: chr 8
allele count: 1
allele frequency: 8.36470096194061e-6
allele num: 119550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7756G>A
  hgvsp: ENST00000335551.7:c.7756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8976G>A
  hgvsp: ENST00000400186.3:c.8976G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9504G>A
  hgvsp: ENST00000537824.1:c.9504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8973G>A
  hgvsp: ENST00000542608.1:c.8973G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9507G>A
  hgvsp: ENST00000520002.1:c.9507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8976G>A
  hgvsp: ENST00000602723.1:c.8976G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9507G>A
  hgvsp: ENST00000602557.1:c.9507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6505
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41983
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly3168Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

8-2820115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820115
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820115
    reference: chr 8
allele count: 7
allele frequency: 5.85832886984467e-5
allele num: 119488
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9501T>C
  hgvsp: ENST00000537824.1:c.9501T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9504T>C
  hgvsp: ENST00000602557.1:c.9504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8973T>C
  hgvsp: ENST00000400186.3:c.8973T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7753T>C
  hgvsp: ENST00000335551.7:c.7753T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8970T>C
  hgvsp: ENST00000542608.1:c.8970T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9504T>C
  hgvsp: ENST00000520002.1:c.9504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8973T>C
  hgvsp: ENST00000602723.1:c.8973T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21900
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6499
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser3167Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-2820122-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820122
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820122
    reference: chr 8
allele count: 1
allele frequency: 8.3948959032908e-6
allele num: 119120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9497G>T
  hgvsp: ENSP00000473359.1:p.Arg3166Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8963G>T
  hgvsp: ENSP00000446243.1:p.Arg2988Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8966G>T
  hgvsp: ENSP00000383047.3:p.Arg2989Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7746G>T
  hgvsp: ENSP00000334828.6:p.Arg2583Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8966G>T
  hgvsp: ENSP00000473617.1:p.Arg2989Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9494G>T
  hgvsp: ENSP00000441462.1:p.Arg3165Leu
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9497G>T
  hgvsp: ENSP00000430733.1:p.Arg3166Leu
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg3165Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

8-2820124-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820124
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820124
    reference: chr 8
allele count: 1
allele frequency: 8.395177809866013e-6
allele num: 119116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8964G>A
  hgvsp: ENST00000400186.3:c.8964G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7744G>A
  hgvsp: ENST00000335551.7:c.7744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9495G>A
  hgvsp: ENST00000520002.1:c.9495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8961G>A
  hgvsp: ENST00000542608.1:c.8961G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9492G>A
  hgvsp: ENST00000537824.1:c.9492G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9495G>A
  hgvsp: ENST00000602557.1:c.9495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8964G>A
  hgvsp: ENST00000602723.1:c.8964G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21474
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly3164Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

8-2820132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820132
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820132
    reference: chr 8
allele count: 2
allele frequency: 1.686170033386167e-5
allele num: 118612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9487G>A
  hgvsp: ENSP00000430733.1:p.Ala3163Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9484G>A
  hgvsp: ENSP00000441462.1:p.Ala3162Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8956G>A
  hgvsp: ENSP00000383047.3:p.Ala2986Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9487G>A
  hgvsp: ENSP00000473359.1:p.Ala3163Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8956G>A
  hgvsp: ENSP00000473617.1:p.Ala2986Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8953G>A
  hgvsp: ENSP00000446243.1:p.Ala2985Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7736G>A
  hgvsp: ENSP00000334828.6:p.Ala2580Thr
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21148
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala3162Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

8-2820133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820133
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820133
    reference: chr 8
allele count: 3
allele frequency: 2.534083422026253e-5
allele num: 118386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8955C>T
  hgvsp: ENST00000400186.3:c.8955C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8952C>T
  hgvsp: ENST00000542608.1:c.8952C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7735C>T
  hgvsp: ENST00000335551.7:c.7735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9486C>T
  hgvsp: ENST00000602557.1:c.9486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8955C>T
  hgvsp: ENST00000602723.1:c.8955C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9483C>T
  hgvsp: ENST00000537824.1:c.9483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9486C>T
  hgvsp: ENST00000520002.1:c.9486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20950
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro3161Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

8-2820137-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820137
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820137
    reference: chr 8
allele count: 2
allele frequency: 1.689645850229792e-5
allele num: 118368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8951T>C
  hgvsp: ENSP00000383047.3:p.Ile2984Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8948T>C
  hgvsp: ENSP00000446243.1:p.Ile2983Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8951T>C
  hgvsp: ENSP00000473617.1:p.Ile2984Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9479T>C
  hgvsp: ENSP00000441462.1:p.Ile3160Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7731T>C
  hgvsp: ENSP00000334828.6:p.Ile2578Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9482T>C
  hgvsp: ENSP00000430733.1:p.Ile3161Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9482T>C
  hgvsp: ENSP00000473359.1:p.Ile3161Thr
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26172
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20895
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6038
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile3160Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

8-2820138-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820138
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820138
    reference: chr 8
allele count: 1
allele frequency: 8.459664320519762e-6
allele num: 118208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8950A>T
  hgvsp: ENSP00000383047.3:p.Ile2984Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9478A>T
  hgvsp: ENSP00000441462.1:p.Ile3160Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8950A>T
  hgvsp: ENSP00000473617.1:p.Ile2984Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9481A>T
  hgvsp: ENSP00000430733.1:p.Ile3161Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7730A>T
  hgvsp: ENSP00000334828.6:p.Ile2578Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8947A>T
  hgvsp: ENSP00000446243.1:p.Ile2983Phe
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9481A>T
  hgvsp: ENSP00000473359.1:p.Ile3161Phe
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile3160Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

8-2820140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820140
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820140
    reference: chr 8
allele count: 1
allele frequency: 8.484930762964974e-6
allele num: 117856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7728G>A
  hgvsp: ENSP00000334828.6:p.Gly2577Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8948G>A
  hgvsp: ENSP00000383047.3:p.Gly2983Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9479G>A
  hgvsp: ENSP00000430733.1:p.Gly3160Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9479G>A
  hgvsp: ENSP00000473359.1:p.Gly3160Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8948G>A
  hgvsp: ENSP00000473617.1:p.Gly2983Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8945G>A
  hgvsp: ENSP00000446243.1:p.Gly2982Asp
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9476G>A
  hgvsp: ENSP00000441462.1:p.Gly3159Asp
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly3159Asp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

8-2820141-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820141
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820141
    reference: chr 8
allele count: 1
allele frequency: 8.484066922319883e-6
allele num: 117868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8944G>A
  hgvsp: ENSP00000446243.1:p.Gly2982Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8947G>A
  hgvsp: ENSP00000473617.1:p.Gly2983Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8947G>A
  hgvsp: ENSP00000383047.3:p.Gly2983Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9478G>A
  hgvsp: ENSP00000430733.1:p.Gly3160Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9478G>A
  hgvsp: ENSP00000473359.1:p.Gly3160Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7727G>A
  hgvsp: ENSP00000334828.6:p.Gly2577Ser
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9475G>A
  hgvsp: ENSP00000441462.1:p.Gly3159Ser
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5764
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly3159Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

8-2820143-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820143
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820143
    reference: chr 8
allele count: 1
allele frequency: 8.497043029025899e-6
allele num: 117688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8945C>G
  hgvsp: ENSP00000473617.1:p.Pro2982Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8942C>G
  hgvsp: ENSP00000446243.1:p.Pro2981Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9473C>G
  hgvsp: ENSP00000441462.1:p.Pro3158Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9476C>G
  hgvsp: ENSP00000473359.1:p.Pro3159Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9476C>G
  hgvsp: ENSP00000430733.1:p.Pro3159Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7725C>G
  hgvsp: ENSP00000334828.6:p.Pro2576Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8945C>G
  hgvsp: ENSP00000383047.3:p.Pro2982Arg
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5713
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro3158Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

8-2820144-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820144
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820144
    reference: chr 8
allele count: 1
allele frequency: 8.5090451149572e-6
allele num: 117522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8944C>A
  hgvsp: ENSP00000383047.3:p.Pro2982Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9475C>A
  hgvsp: ENSP00000430733.1:p.Pro3159Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7724C>A
  hgvsp: ENSP00000334828.6:p.Pro2576Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9475C>A
  hgvsp: ENSP00000473359.1:p.Pro3159Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8941C>A
  hgvsp: ENSP00000446243.1:p.Pro2981Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8944C>A
  hgvsp: ENSP00000473617.1:p.Pro2982Thr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9472C>A
  hgvsp: ENSP00000441462.1:p.Pro3158Thr
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro3158Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-2820147-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820147
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820147
    reference: chr 8
allele count: 2
allele frequency: 1.704768236758213e-5
allele num: 117318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9472G>T
  hgvsp: ENSP00000430733.1:p.Asp3158Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9472G>T
  hgvsp: ENSP00000473359.1:p.Asp3158Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7721G>T
  hgvsp: ENSP00000334828.6:p.Asp2575Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8941G>T
  hgvsp: ENSP00000383047.3:p.Asp2981Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8938G>T
  hgvsp: ENSP00000446243.1:p.Asp2980Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9469G>T
  hgvsp: ENSP00000441462.1:p.Asp3157Tyr
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8941G>T
  hgvsp: ENSP00000473617.1:p.Asp2981Tyr
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24478
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3578
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp3157Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

8-2820150-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820150
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820150
    reference: chr 8
allele count: 2
allele frequency: 1.708729901064539e-5
allele num: 117046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9469G>A
  hgvsp: ENSP00000473359.1:p.Gly3157Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8935G>A
  hgvsp: ENSP00000446243.1:p.Gly2979Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8938G>A
  hgvsp: ENSP00000383047.3:p.Gly2980Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7718G>A
  hgvsp: ENSP00000334828.6:p.Gly2574Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9466G>A
  hgvsp: ENSP00000441462.1:p.Gly3156Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8938G>A
  hgvsp: ENSP00000473617.1:p.Gly2980Arg
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9469G>A
  hgvsp: ENSP00000430733.1:p.Gly3157Arg
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19896
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly3156Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

8-2820151-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2820151
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 2820151
    reference: chr 8
allele count: 1
allele frequency: 8.563110121596164e-6
allele num: 116780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473359
  ensembl transcript: ENST00000602557
  gene symbol: CSMD1
  hgvsc: ENST00000602557.1:c.9468C>T
  hgvsp: ENST00000602557.1:c.9468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000383047
  ensembl transcript: ENST00000400186
  gene symbol: CSMD1
  hgvsc: ENST00000400186.3:c.8937C>T
  hgvsp: ENST00000400186.3:c.8937C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000446243
  ensembl transcript: ENST00000542608
  gene symbol: CSMD1
  hgvsc: ENST00000542608.1:c.8934C>T
  hgvsp: ENST00000542608.1:c.8934C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000441462
  ensembl transcript: ENST00000537824
  gene symbol: CSMD1
  hgvsc: ENST00000537824.1:c.9465C>T
  hgvsp: ENST00000537824.1:c.9465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000430733
  ensembl transcript: ENST00000520002
  gene symbol: CSMD1
  hgvsc: ENST00000520002.1:c.9468C>T
  hgvsp: ENST00000520002.1:c.9468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000334828
  ensembl transcript: ENST00000335551
  gene symbol: CSMD1
  hgvsc: ENST00000335551.7:c.7717C>T
  hgvsp: ENST00000335551.7:c.7717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183117
  ensembl protein: ENSP00000473617
  ensembl transcript: ENST00000602723
  gene symbol: CSMD1
  hgvsc: ENST00000602723.1:c.8937C>T
  hgvsp: ENST00000602723.1:c.8937C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14026
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys3155Cys
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3717
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45112
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.069976460517869e-4
allele num: 9346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.488031e6

MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.219e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.223e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.254e1

GenotypeQuality
all individuals: 362
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 644
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.707063733642954e-5
allele num: 63734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15262
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.832e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

DP
type: SiteQuality
SIO_000300: 1.463733e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.282e0

QD
type: SiteQuality
SIO_000300: 1.137e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42880
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.311303435615001e-4
allele num: 15252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.67e0

FS
type: SiteQuality
SIO_000300: 6.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

DP
type: SiteQuality
SIO_000300: 1.463874e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4912
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.337068160597573e-4
allele num: 6426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.460696e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

QD
type: SiteQuality
SIO_000300: 1.381e1

FS
type: SiteQuality
SIO_000300: 5.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

GenotypeQuality
all individuals: 292
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3716
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588410953681937e-5
allele num: 62956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

QD
type: SiteQuality
SIO_000300: 9.58e0

VQSLOD
type: SiteQuality
SIO_000300: -3.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.437273e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

GenotypeQuality
all individuals: 2680
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 605
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30521
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60232
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.271940981938438e-4
allele num: 7862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.647e0

QD
type: SiteQuality
SIO_000300: 1.934e1

VQSLOD
type: SiteQuality
SIO_000300: -5.994e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 1.333266e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 983
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variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.036269430051813e-4
allele num: 9650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56746
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: -3.238e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.164417e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.16e-1

QD
type: SiteQuality
SIO_000300: 2.167e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.356483993488877e-4
allele num: 7372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14030
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

QD
type: SiteQuality
SIO_000300: 7.14e0

DP
type: SiteQuality
SIO_000300: 1.16346e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

FS
type: SiteQuality
SIO_000300: 2.313e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4991
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variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.286326618088298e-4
allele num: 13998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.48e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

DP
type: SiteQuality
SIO_000300: 1.163271e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.28e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.776135838868957e-5
allele num: 56302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13988
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.129e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 1.11e1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

VQSLOD
type: SiteQuality
SIO_000300: -6.72e-1

DP
type: SiteQuality
SIO_000300: 1.154554e6

GenotypeQuality
all individuals: 564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7407
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1033
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12163
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.210067763794773e-4
allele num: 8264
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.177e-1

DP
type: SiteQuality
SIO_000300: 1.147614e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.578e0

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.328e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.370283018867924e-5
allele num: 13568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.202535292422932e-4
allele num: 6942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53730
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.66e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

DP
type: SiteQuality
SIO_000300: 1.104897e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.884587840639252e-5
allele num: 53062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8934
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.021e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.5872e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.099072e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

QD
type: SiteQuality
SIO_000300: 1.744e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.489514679448772e-5
allele num: 13352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.91717791411043e-5
allele num: 52160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.743e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.37e-1

DP
type: SiteQuality
SIO_000300: 1.08977e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.995e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.058e0

DP
type: SiteQuality
SIO_000300: 1.470555e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.012e0

QD
type: SiteQuality
SIO_000300: 7.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.058010458395768e-5
allele num: 65402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.753155680224404e-4
allele num: 11408
num of homozygotes: 0

East Asian
type: Population
allele count: 45
allele frequency: 5.296610169491525e-3
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.098920617570706e-4
allele num: 14638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.162790697674419e-3
allele num: 860
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

DP
type: SiteQuality
SIO_000300: 1.474963e6

GenotypeQuality
all individuals: 1767
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14794
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.750087504375219e-4
allele num: 11428
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

DP
type: SiteQuality
SIO_000300: 1.499209e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.168e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.157e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2760
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516622179082747e-5
allele num: 65936
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15380
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

DP
type: SiteQuality
SIO_000300: 1.528991e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e-1

FS
type: SiteQuality
SIO_000300: 6.685e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.077e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 40310
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 9.75e1
variant carriers: 84

African
type: Population
allele count: 78
allele frequency: 7.985257985257985e-3
allele num: 9768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15448
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.35691878703381e-4
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.532796e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

GenotypeQuality
all individuals: 490
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66072
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.539406e6

FS
type: SiteQuality
SIO_000300: 1.202e0

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

VQSLOD
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.93e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

GenotypeQuality
all individuals: 448
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6675
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 4
allele frequency: 4.094165813715455e-4
allele num: 9770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 1.540804e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.863e0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 773
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509251713000694e-5
allele num: 66258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.779e-1

FS
type: SiteQuality
SIO_000300: 7.47e0

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.693e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.59e-1

DP
type: SiteQuality
SIO_000300: 1.551962e6

QD
type: SiteQuality
SIO_000300: 8.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6765
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.115653040877368e-4
allele num: 16048
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

FS
type: SiteQuality
SIO_000300: 6.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

DP
type: SiteQuality
SIO_000300: 1.555023e6

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2302
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.231306081754735e-5
allele num: 16048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.79e-1

FS
type: SiteQuality
SIO_000300: 6.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

DP
type: SiteQuality
SIO_000300: 1.555023e6

MQRankSum
type: SiteQuality
SIO_000300: -8.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

GenotypeQuality
all individuals: 2790
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42265
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.127450980392157e-5
allele num: 16320
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 1.564753e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42265
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006614552014432e-5
allele num: 66520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.569586e6

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

VQSLOD
type: SiteQuality
SIO_000300: -9.896e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.058e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
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variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.762e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 1.571543e6

QD
type: SiteQuality
SIO_000300: 8.31e0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 2288
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variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004536850644473e-5
allele num: 66566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.571886e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

FS
type: SiteQuality
SIO_000300: 5.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.081e1

GenotypeQuality
all individuals: 778
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 42514
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1475
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variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 6914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 2.862e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.89e-1

DP
type: SiteQuality
SIO_000300: 1.572874e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 3.025e1

VQSLOD
type: SiteQuality
SIO_000300: -2.866e0

GenotypeQuality
all individuals: 2794
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 6897
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variant carriers: 0

GenotypeQuality
all individuals: 601
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variant carriers: 0

GenotypeQuality
all individuals: 779
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variant carriers: 0

GenotypeQuality
all individuals: 2326
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variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.68e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.148e1

FS
type: SiteQuality
SIO_000300: 4.557e0

DP
type: SiteQuality
SIO_000300: 1.573423e6

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 1478
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2797
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.122448979591836e-4
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.233e1

DP
type: SiteQuality
SIO_000300: 1.573392e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 5.042e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 55
bin: 3.75e1
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GenotypeQuality
all individuals: 2330
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
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variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.496e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.574194e6

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.17e1

GenotypeQuality
all individuals: 599
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
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variant carriers: 1

GenotypeQuality
all individuals: 2332
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 3.322e0

DP
type: SiteQuality
SIO_000300: 1.574318e6

QD
type: SiteQuality
SIO_000300: 1.846e1

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
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GenotypeQuality
all individuals: 2800
bin: 9.75e1
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GenotypeQuality
all individuals: 6892
bin: 6.75e1
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GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.574609e6

QD
type: SiteQuality
SIO_000300: 1.232e1

FS
type: SiteQuality
SIO_000300: 7.162e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.917e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7890
bin: 9.75e1
variant carriers: 6249

GenotypeQuality
all individuals: 1753
bin: 7.75e1
variant carriers: 13

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 40206
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1839
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6015
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 507
bin: 9.25e1
variant carriers: 21

South Asian
type: Population
allele count: 249
allele frequency: 1.512390670553936e-2
allele num: 16464
num of homozygotes: 5

Latino
type: Population
allele count: 1090
allele frequency: 9.456880097171612e-2
allele num: 11526
num of homozygotes: 53

European (Finnish)
type: Population
allele count: 99
allele frequency: 1.49818401937046e-2
allele num: 6608
num of homozygotes: 1

Other
type: Population
allele count: 29
allele frequency: 3.251121076233184e-2
allele num: 892
num of homozygotes: 1

East Asian
type: Population
allele count: 669
allele frequency: 7.813594954449894e-2
allele num: 8562
num of homozygotes: 29

African
type: Population
allele count: 2963
allele frequency: 3.024086548275158e-1
allele num: 9798
num of homozygotes: 469

European (Non-Finnish)
type: Population
allele count: 1827
allele frequency: 2.742584364116729e-2
allele num: 66616
num of homozygotes: 20

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.097e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e0

DP
type: SiteQuality
SIO_000300: 1.73479e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.52e0

QD
type: SiteQuality
SIO_000300: 1.51e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43947
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.735e-1

DP
type: SiteQuality
SIO_000300: 1.569696e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 2.356e1

GenotypeQuality
all individuals: 214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.339248190520663e-4
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

DP
type: SiteQuality
SIO_000300: 1.569657e6

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

FS
type: SiteQuality
SIO_000300: 1.785e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 2168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43974
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.503035964502569e-4
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

FS
type: SiteQuality
SIO_000300: 6.838e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.409e1

DP
type: SiteQuality
SIO_000300: 1.569175e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 43955
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.568849e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 9.02e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43955
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 247
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215509906405737e-4
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504233979941145e-5
allele num: 66604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 9.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.568849e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
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variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.238e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

DP
type: SiteQuality
SIO_000300: 1.568586e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 1192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
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GenotypeQuality
all individuals: 458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.25e1
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GenotypeQuality
all individuals: 43996
bin: 6.25e1
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GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.525e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

FS
type: SiteQuality
SIO_000300: 7.968e0

DP
type: SiteQuality
SIO_000300: 1.568232e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.683e1

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6916
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.25480184779966e-4
allele num: 16452
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 2.668e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-1

DP
type: SiteQuality
SIO_000300: 1.568193e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.93e-1

DP
type: SiteQuality
SIO_000300: 1.567231e6

QD
type: SiteQuality
SIO_000300: 8.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.329e1

FS
type: SiteQuality
SIO_000300: 1.331e0

DP
type: SiteQuality
SIO_000300: 1.566857e6

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.178e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6893
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.062e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 1.565582e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2096
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.809715625563639e-4
allele num: 66532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 33
allele frequency: 5.001515610791149e-3
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.087168249330412e-4
allele num: 16428
num of homozygotes: 1

East Asian
type: Population
allele count: 268
allele frequency: 3.138908409463575e-2
allele num: 8538
num of homozygotes: 5

Latino
type: Population
allele count: 2
allele frequency: 1.736412571627018e-4
allele num: 11518
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

FS
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.693e0

QD
type: SiteQuality
SIO_000300: 1.348e1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

DP
type: SiteQuality
SIO_000300: 1.571881e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 585
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005891547432969e-5
allele num: 66536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

DP
type: SiteQuality
SIO_000300: 1.563161e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6850
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.287e0

DP
type: SiteQuality
SIO_000300: 1.562867e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.131e1

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.507e0

GenotypeQuality
all individuals: 570
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 9.75e1
variant carriers: 97

GenotypeQuality
all individuals: 513
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 79
allele frequency: 8.09260397459537e-3
allele num: 9762
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218620521569583e-4
allele num: 16412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.346314325452017e-4
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.376465072667605e-4
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.512363877023043e-5
allele num: 66484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.802e0

DP
type: SiteQuality
SIO_000300: 1.560425e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.264e1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.659e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6788
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504709741490866e-5
allele num: 66458
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

FS
type: SiteQuality
SIO_000300: 3.377e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 1.557347e6

GenotypeQuality
all individuals: 6714
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.204e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 1.556051e6

FS
type: SiteQuality
SIO_000300: 2.603e0

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 42612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 2011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 6687
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.024822267743102e-5
allele num: 66392
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.659875564230816e-4
allele num: 16394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.611420612813371e-4
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 5.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

DP
type: SiteQuality
SIO_000300: 1.555357e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.552441e6

QD
type: SiteQuality
SIO_000300: 1.107e1

FS
type: SiteQuality
SIO_000300: 3.555e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.631e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.467e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
all individuals: 6703
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.346316283435007e-4
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.552022e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 3.83e0

MQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeQuality
all individuals: 293
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1939
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509251713000694e-5
allele num: 66258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 1.546428e6

FS
type: SiteQuality
SIO_000300: 1.002e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.123e0

VQSLOD
type: SiteQuality
SIO_000300: -2.417e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.142e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

GenotypeQuality
all individuals: 427
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1938
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GenotypeQuality
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GenotypeQuality
all individuals: 409
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.730574471800244e-5
allele num: 11454
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.652e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

DP
type: SiteQuality
SIO_000300: 1.543209e6

QD
type: SiteQuality
SIO_000300: 1.483e1

GenotypeQuality
all individuals: 1949
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
all individuals: 411
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GenotypeQuality
all individuals: 1179
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GenotypeQuality
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GenotypeQuality
all individuals: 1993
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GenotypeQuality
all individuals: 1107
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GenotypeQuality
all individuals: 367
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variant carriers: 0

GenotypeQuality
all individuals: 42365
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.058809293320426e-4
allele num: 66112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.673e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 1.541268e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

QD
type: SiteQuality
SIO_000300: 1.372e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.030502885408079e-4
allele num: 9704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 1.5309e6

FS
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 1.179e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517220452131695e-5
allele num: 65910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16192
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.47e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.401e0

VQSLOD
type: SiteQuality
SIO_000300: 5.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.449e0

DP
type: SiteQuality
SIO_000300: 1.530172e6

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 417
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GenotypeQuality
all individuals: 631
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.03498240529911e-4
allele num: 9662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523275651961979e-5
allele num: 65648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 1.018e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.520683e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
all individuals: 541
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 720
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GenotypeQuality
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GenotypeQuality
all individuals: 1067
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GenotypeQuality
all individuals: 1924
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 2
allele frequency: 2.0755500207555e-4
allele num: 9636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52587890625e-5
allele num: 65536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Finnish)
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allele count: 0
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Latino
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allele frequency: 0.0e0
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South Asian
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Other
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

QD
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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FS
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MQRankSum
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SIO_000300: -2.95e-1

ClippingRankSum
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SIO_000300: -5.1e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
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allele frequency: 2.074258452603194e-4
allele num: 9642
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65530
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 16034
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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SIO_000300: 9.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.528210770829513e-5
allele num: 65436
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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DP
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QD
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MQRankSum
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 3.5e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.532895947023116e-5
allele num: 65236
num of homozygotes: 0

FS
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VQSLOD
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ReadPosRankSum
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SIO_000300: -7.93e-1

InbreedingCoeff
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DP
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MQ
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.142e0

MQRankSum
type: SiteQuality
SIO_000300: -3.201e0

QD
type: SiteQuality
SIO_000300: 3.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.53275497378989e-5
allele num: 65242
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.495771e6

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.122e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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East Asian
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allele frequency: 1.193887297039159e-4
allele num: 8376
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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MQ
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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QD
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MQ
type: SiteQuality
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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allele num: 11230
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Other
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African
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allele num: 9556
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European (Finnish)
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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Latino
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African
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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FS
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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