5-161528341-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528341
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528341
    reference: chr 5
allele count: 23
allele frequency: 1.927977467811159e-4
allele num: 119296
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+18T>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+18T>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+18T>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+18T>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+18T>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+18T>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+18T>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19093
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26990
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5457
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

5-161528344-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528344
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528344
    reference: chr 5
allele count: 4
allele frequency: 3.353397830351604e-5
allele num: 119282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+21A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+21A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+21A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+21A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+21A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+21A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+21A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

5-161528345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528345
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528345
    reference: chr 5
allele count: 1
allele frequency: 8.385884878572387e-6
allele num: 119248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+22T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+22T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+22T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+22T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+22T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+22T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+22T>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11144
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

5-161528347-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528347
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528347
    reference: chr 5
allele count: 5
allele frequency: 4.194349372525334e-5
allele num: 119208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+24T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+24T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+24T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+24T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+24T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+24T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+24T>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

5-161528353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528353
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528353
    reference: chr 5
allele count: 2
allele frequency: 1.682821755519655e-5
allele num: 118848
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+30C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+30C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+30C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+30C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+30C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+30C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+30C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16511
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11141
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-161528355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528355
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528355
    reference: chr 5
allele count: 2
allele frequency: 1.684749646202574e-5
allele num: 118712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+32C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+32C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+32C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+32C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+32C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+32C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+32C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11138
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/5-161528364-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528364
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528364
    reference: chr 5
allele count: 180
allele frequency: 1.523590255793875e-3
allele num: 118142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+41A>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14429
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10550
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 9.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4056
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

5-161528365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528365
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528365
    reference: chr 5
allele count: 3
allele frequency: 2.541640544249962e-5
allele num: 118034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+42C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+42C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+42C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+42C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+42C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+42C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+42C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9489
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14424
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4427
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

5-161528375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528375
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528375
    reference: chr 5
allele count: 1
allele frequency: 8.560764305037153e-6
allele num: 116812
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+52G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+52G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+52G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+52G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+52G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+52G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+52G>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4446
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11125
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

5-161528375-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161528375
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161528375
    reference: chr 5
allele count: 1
allele frequency: 8.560764305037153e-6
allele num: 116812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+52G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+52G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+52G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+52G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.631+52G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+52G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+52G>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4871
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

5-161529516-T-TTTGTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529516
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529522
    reference: chr 5
allele count: 1
allele frequency: 9.389671361502347e-5
allele num: 10650
alternate allele: TTTGTTG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.632-29_632-24dupGTTGTT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

5-161529516-TTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529516
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529513
    reference: chr 5
allele count: 1
allele frequency: 9.389671361502347e-5
allele num: 10650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+1211_346+1213delGTT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+1211_631+1213delGTT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+1211_631+1213delGTT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.632-26_632-24delGTT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+1211_346+1213delGTT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+1211_*596+1213delGTT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+1211_*233+1213delGTT
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TTTG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

5-161529519-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529519
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529519
    reference: chr 5
allele count: 6
allele frequency: 5.662514156285391e-4
allele num: 10596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+1196G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+1196G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+1196G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+1196G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.632-41G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+1196G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+1196G>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

5-161529531-G-GTTGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529531
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529536
    reference: chr 5
allele count: 4
allele frequency: 3.744617112900206e-4
allele num: 10682
alternate allele: GTTGTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+1227_346+1231dupTTTTG
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.632-10_632-6dupTTTTG
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+1227_631+1231dupTTTTG
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+1227_*233+1231dupTTTTG
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+1227_346+1231dupTTTTG
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+1227_631+1231dupTTTTG
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+1227_*596+1231dupTTTTG
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS

5-161529566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529566
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529566
    reference: chr 5
allele count: 1
allele frequency: 9.312721177127957e-5
allele num: 10738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+1243G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+1243G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+1243G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.638G>A
  hgvsp: ENSP00000410732.2:p.Arg213His
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+1243G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+1243G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+1243G>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg213His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

5-161529571-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529571
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529571
    reference: chr 5
allele count: 8836
allele frequency: 8.205794947994056e-1
allele num: 10768
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.643A>G
  hgvsp: ENSP00000410732.2:p.Ile215Val
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+1248A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+1248A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+1248A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+1248A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+1248A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+1248A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 3.75e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 555
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.75e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.25e1
  variant carriers: 521
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 604
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 2.5e0
  variant carriers: 599
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.75e1
  variant carriers: 509
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.5e0
  variant carriers: 384
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.25e1
  variant carriers: 7
hgvs: p.Ile215Val
num of homozygotes: 3639
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

5-161529592-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529592
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529592
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 10676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+1269A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.664A>G
  hgvsp: ENSP00000410732.2:p.Ser222Gly
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+1269A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+1269A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+1269A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+1269A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+1269A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser222Gly
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

5-161529606-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529606
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529606
    reference: chr 5
allele count: 10
allele frequency: 9.414422895876483e-4
allele num: 10622
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+1283G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+1283G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.678G>A
  hgvsp: ENST00000414552.2:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+1283G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+1283G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+1283G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+1283G>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser226Ser
num of homozygotes: 1
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-161529606-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529606
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529606
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 10622
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+1283G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+1283G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+1283G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.678G>T
  hgvsp: ENST00000414552.2:c.678G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+1283G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+1283G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+1283G>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser226Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

5-161529607-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529607
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529607
    reference: chr 5
allele count: 10
allele frequency: 9.40379913485048e-4
allele num: 10634
alternate allele: T
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.679G>T
  hgvsp: ENSP00000410732.2:p.Ala227Ser
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*233+1284G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.631+1284G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.631+1284G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*596+1284G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.346+1284G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.346+1284G>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ala227Ser
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS

5-161529612-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529612
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529612
    reference: chr 5
allele count: 1
allele frequency: 9.414422895876483e-5
allele num: 10622
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.684C>G
  hgvsp: ENSP00000410732.2:p.His228Gln
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-1283C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-1283C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-1283C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-1283C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-1283C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-1283C>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His228Gln
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

5-161529623-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529623
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529623
    reference: chr 5
allele count: 1
allele frequency: 9.46431951542684e-5
allele num: 10566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-1272G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-1272G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-1272G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.695G>A
  hgvsp: ENSP00000410732.2:p.Arg232His
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-1272G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-1272G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-1272G>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg232His
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

5-161529631-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529631
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529631
    reference: chr 5
allele count: 1119
allele frequency: 1.062274539586102e-1
allele num: 10534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-1264G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-1264G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.703G>T
  hgvsp: ENSP00000410732.2:p.Gly235Cys
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-1264G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-1264G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-1264G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-1264G>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 2.5e0
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 2.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 2.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 9.75e1
  variant carriers: 1031
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly235Cys
num of homozygotes: 63
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-161529633-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529633
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529633
    reference: chr 5
allele count: 5
allele frequency: 4.803073967339097e-4
allele num: 10410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.705C>A
  hgvsp: ENST00000414552.2:c.705C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-1262C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-1262C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-1262C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-1262C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-1262C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-1262C>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3528
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly235Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

5-161529646-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529646
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529646
    reference: chr 5
allele count: 12
allele frequency: 1.200480192076831e-3
allele num: 9996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-1249C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-1249C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.718C>G
  hgvsp: ENSP00000410732.2:p.Pro240Ala
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-1249C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-1249C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-1249C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-1249C>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro240Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/5-161529661-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529661
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529661
    reference: chr 5
allele count: 1
allele frequency: 1.097213078779899e-4
allele num: 9114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-1234A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-1234A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-1234A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-1234A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-1234A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-1234A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.733A>C
  hgvsp: ENST00000414552.2:c.733A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg245Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

5-161529720-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529720
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529720
    reference: chr 5
allele count: 3105
allele frequency: 7.124827902707664e-1
allele num: 4358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-1175A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-1175A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-1175A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-1175A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-1175A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-1175A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.751+41A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 7.5e0
  variant carriers: 2186
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 2.5e0
  variant carriers: 747
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 1.25e1
  variant carriers: 1601
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 1.25e1
  variant carriers: 283
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 1.75e1
  variant carriers: 563
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 3.25e1
  variant carriers: 466
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 9.75e1
  variant carriers: 985
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.5e0
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 2.25e1
  variant carriers: 634
num of homozygotes: 1080
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

5-161529727-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161529727
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161529727
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 2572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-1168G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.751+48G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-1168G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-1168G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-1168G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-1168G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-1168G>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-161530844-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530844
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530844
    reference: chr 5
allele count: 3
allele frequency: 2.502377258395476e-5
allele num: 119886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-51A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.752-51A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-51A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-51A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-51A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-51A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-51A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12618
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

5-161530849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530849
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530849
    reference: chr 5
allele count: 328
allele frequency: 2.735384871987324e-3
allele num: 119910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-46C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-46C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-46C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-46C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-46C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-46C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.752-46C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10561
  bin: 2.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12820
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6106
  bin: 3.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3943
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15760
  bin: 9.75e1
  variant carriers: 306
num of homozygotes: 10
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

5-161530855-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530855
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530855
    reference: chr 5
allele count: 2
allele frequency: 1.666277868497351e-5
allele num: 120028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-40T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-40T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.752-40T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-40T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-40T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-40T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-40T>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/5-161530885-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530885
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530885
    reference: chr 5
allele count: 8
allele frequency: 6.631409671911006e-5
allele num: 120638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-10C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-10C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.752-10C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-10C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-10C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-10C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-10C>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4752
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

5-161530887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530887
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530887
    reference: chr 5
allele count: 7
allele frequency: 5.80113702285648e-5
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-8C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-8C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-8C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-8C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-8C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.752-8C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-8C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 15572
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 8.75e1
  variant carriers: 0
hgvs: c.752-8C>T
num of homozygotes: 1
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

5-161530888-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530888
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530888
    reference: chr 5
allele count: 2
allele frequency: 1.657193046417977e-5
allele num: 120686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-7A>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-7A>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-7A>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.752-7A>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-7A>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-7A>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-7A>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4042
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.752-7A>T
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

5-161530889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530889
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530889
    reference: chr 5
allele count: 6
allele frequency: 4.971331985549995e-5
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*234-6C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.632-6C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.347-6C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*597-6C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.347-6C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.632-6C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.752-6C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: c.752-6C>T
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum

5-161530896-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530896
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530896
    reference: chr 5
allele count: 1
allele frequency: 8.275953389830508e-6
allele num: 120832
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.753T>A
  hgvsp: ENSP00000410732.2:p.Asp251Glu
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*235T>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.633T>A
  hgvsp: ENSP00000354651.4:p.Tyr211Ter
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*598T>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.348T>A
  hgvsp: ENSP00000377510.4:p.Tyr116Ter
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.348T>A
  hgvsp: ENSP00000430182.1:p.Tyr116Ter
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.633T>A
  hgvsp: ENSP00000349000.3:p.Tyr211Ter
  variant of: http://identifiers.org/hgnc/4087
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15568
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr211Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ

5-161530906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530906
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530906
    reference: chr 5
allele count: 3
allele frequency: 2.480650922802143e-5
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.643C>T
  hgvsp: ENSP00000354651.4:p.Arg215Cys
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.643C>T
  hgvsp: ENSP00000349000.3:p.Arg215Cys
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.763C>T
  hgvsp: ENSP00000410732.2:p.Arg255Cys
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*245C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.358C>T
  hgvsp: ENSP00000430182.1:p.Arg120Cys
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.358C>T
  hgvsp: ENSP00000377510.4:p.Arg120Cys
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*608C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4042
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg255Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

5-161530918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530918
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530918
    reference: chr 5
allele count: 1
allele frequency: 8.261185645363822e-6
allele num: 121048
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.775G>A
  hgvsp: ENSP00000410732.2:p.Val259Ile
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*257G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.655G>A
  hgvsp: ENSP00000354651.4:p.Val219Ile
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.655G>A
  hgvsp: ENSP00000349000.3:p.Val219Ile
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.370G>A
  hgvsp: ENSP00000430182.1:p.Val124Ile
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.370G>A
  hgvsp: ENSP00000377510.4:p.Val124Ile
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*620G>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15572
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val259Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-161530934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530934
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530934
    reference: chr 5
allele count: 3
allele frequency: 2.476882430647292e-5
allele num: 121120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.671G>A
  hgvsp: ENSP00000349000.3:p.Arg224Gln
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*636G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.791G>A
  hgvsp: ENSP00000410732.2:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.386G>A
  hgvsp: ENSP00000430182.1:p.Arg129Gln
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.386G>A
  hgvsp: ENSP00000377510.4:p.Arg129Gln
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*273G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.671G>A
  hgvsp: ENSP00000354651.4:p.Arg224Gln
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15574
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Arg264Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-161530953-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530953
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530953
    reference: chr 5
allele count: 5
allele frequency: 4.127728428491233e-5
allele num: 121132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*292C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.405C>A
  hgvsp: ENST00000393933.4:c.405C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.810C>A
  hgvsp: ENST00000414552.2:c.810C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.690C>A
  hgvsp: ENST00000356592.3:c.690C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.405C>A
  hgvsp: ENST00000522053.1:c.405C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*655C>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.690C>A
  hgvsp: ENST00000361925.4:c.690C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15577
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly270Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

5-161530953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530953
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530953
    reference: chr 5
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*292C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.405C>T
  hgvsp: ENST00000393933.4:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.690C>T
  hgvsp: ENST00000356592.3:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.405C>T
  hgvsp: ENST00000522053.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.690C>T
  hgvsp: ENST00000361925.4:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*655C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.810C>T
  hgvsp: ENST00000414552.2:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15577
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly270Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

5-161530954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530954
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530954
    reference: chr 5
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.691G>A
  hgvsp: ENSP00000349000.3:p.Asp231Asn
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.406G>A
  hgvsp: ENSP00000430182.1:p.Asp136Asn
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.691G>A
  hgvsp: ENSP00000354651.4:p.Asp231Asn
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.811G>A
  hgvsp: ENSP00000410732.2:p.Asp271Asn
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*656G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.406G>A
  hgvsp: ENSP00000377510.4:p.Asp136Asn
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*293G>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15573
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp271Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

5-161530965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530965
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530965
    reference: chr 5
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*667C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.417C>T
  hgvsp: ENST00000393933.4:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.417C>T
  hgvsp: ENST00000522053.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.702C>T
  hgvsp: ENST00000356592.3:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.702C>T
  hgvsp: ENST00000361925.4:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.822C>T
  hgvsp: ENST00000414552.2:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*304C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4041
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser274Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

5-161530980-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161530980
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161530980
    reference: chr 5
allele count: 192
allele frequency: 1.584681413007593e-3
allele num: 121160
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.432A>G
  hgvsp: ENST00000522053.1:c.432A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.432A>G
  hgvsp: ENST00000393933.4:c.432A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*319A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.837A>G
  hgvsp: ENST00000414552.2:c.837A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.717A>G
  hgvsp: ENST00000356592.3:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.717A>G
  hgvsp: ENST00000361925.4:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*682A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 9.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14378
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10877
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4754
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln279Gln
num of homozygotes: 2
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

5-161531001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531001
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531001
    reference: chr 5
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.738A>G
  hgvsp: ENST00000361925.4:c.738A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.858A>G
  hgvsp: ENST00000414552.2:c.858A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.738A>G
  hgvsp: ENST00000356592.3:c.738A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*703A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.453A>G
  hgvsp: ENST00000522053.1:c.453A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.453A>G
  hgvsp: ENST00000393933.4:c.453A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*340A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20541
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg286Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

5-161531007-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531007
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531007
    reference: chr 5
allele count: 2
allele frequency: 1.651145895251304e-5
allele num: 121128
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.864C>T
  hgvsp: ENST00000414552.2:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.459C>T
  hgvsp: ENST00000522053.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.744C>T
  hgvsp: ENST00000361925.4:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.459C>T
  hgvsp: ENST00000393933.4:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*346C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*709C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.744C>T
  hgvsp: ENST00000356592.3:c.744C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr288Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/5-161531016-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531016
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531016
    reference: chr 5
allele count: 3
allele frequency: 2.476677949310658e-5
allele num: 121130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.468A>C
  hgvsp: ENST00000393933.4:c.468A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.753A>C
  hgvsp: ENST00000361925.4:c.753A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.873A>C
  hgvsp: ENST00000414552.2:c.873A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.468A>C
  hgvsp: ENST00000522053.1:c.468A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.753A>C
  hgvsp: ENST00000356592.3:c.753A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*718A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*355A>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20562
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val291Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-161531022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531022
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531022
    reference: chr 5
allele count: 3
allele frequency: 2.477291494632535e-5
allele num: 121100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.474G>A
  hgvsp: ENST00000522053.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*724G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.474G>A
  hgvsp: ENST00000393933.4:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*361G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.759G>A
  hgvsp: ENST00000356592.3:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.879G>A
  hgvsp: ENST00000414552.2:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.759G>A
  hgvsp: ENST00000361925.4:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14014
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15546
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20487
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys293Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

5-161531031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531031
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531031
    reference: chr 5
allele count: 68
allele frequency: 5.616863807572854e-4
allele num: 121064
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*370C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.483C>T
  hgvsp: ENST00000522053.1:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*733C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.483C>T
  hgvsp: ENST00000393933.4:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.768C>T
  hgvsp: ENST00000356592.3:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.888C>T
  hgvsp: ENST00000414552.2:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.768C>T
  hgvsp: ENST00000361925.4:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10923
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 7.25e1
  variant carriers: 0
hgvs: c.888C>T
num of homozygotes: 1
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

5-161531042-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531042
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531042
    reference: chr 5
allele count: 10
allele frequency: 8.266239026567693e-5
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+10A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+10A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+10A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+10A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+10A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+10A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+10A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10910
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14519
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20174
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

5-161531050-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531050
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531050
    reference: chr 5
allele count: 18
allele frequency: 1.488735236708903e-4
allele num: 120908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+18A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+18A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+18A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+18A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+18A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+18A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+18A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14455
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19976
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

5-161531051-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531051
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531052
    reference: chr 5
allele count: 1
allele frequency: 8.271572260455268e-6
allele num: 120896
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+21dupA
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+21dupA
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+21dupA
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+21dupA
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+21dupA
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+21dupA
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+21dupA
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15541
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4760
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/5-161531052-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531052
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531052
    reference: chr 5
allele count: 9
allele frequency: 7.444415034409741e-5
allele num: 120896
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+20A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+20A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+20A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+20A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+20A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+20A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+20A>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14449
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19948
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

5-161531054-TTTCAAGTGACCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531054
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531042
    reference: chr 5
allele count: 4
allele frequency: 3.309066843150232e-5
allele num: 120880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14430
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15541
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: TTTCAAGTGACCC
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

5-161531063-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531063
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531063
    reference: chr 5
allele count: 8
allele frequency: 6.630200563567048e-5
allele num: 120660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+31A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+31A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+31A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+31A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+31A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+31A>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+31A>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4010
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18758
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

5-161531064-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531064
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531064
    reference: chr 5
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+32C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+32C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+32C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+32C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+32C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+32C>G
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+32C>G
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10839
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4736
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

5-161531069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531069
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531069
    reference: chr 5
allele count: 25
allele frequency: 2.074585497817536e-4
allele num: 120506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+37C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+37C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+37C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+37C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+37C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+37C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+37C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-161531073-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531073
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531073
    reference: chr 5
allele count: 1
allele frequency: 8.304406317992327e-6
allele num: 120418
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+41A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+41A>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3998
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

5-161531075-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531075
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531075
    reference: chr 5
allele count: 3
allele frequency: 2.493309619188511e-5
allele num: 120322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+43T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+43T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+43T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+43T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+43T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+43T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+43T>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-161531077-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531077
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531077
    reference: chr 5
allele count: 1
allele frequency: 8.314348903337379e-6
allele num: 120274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+45G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+45G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+45G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+45G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+45G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+45G>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+45G>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15527
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15062
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3089
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 3987
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

5-161531082-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161531082
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161531082
    reference: chr 5
allele count: 1
allele frequency: 8.330695279828055e-6
allele num: 120038
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*734+50T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.889+50T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.484+50T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.769+50T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*371+50T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.484+50T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.769+50T>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3979
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15528
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6201
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

5-161569123-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569123
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569123
    reference: chr 5
allele count: 6
allele frequency: 4.942176534545814e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-47C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-47C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-47C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-47C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-47C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-47C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-47C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4059
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

5-161569127-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569127
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569127
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-43G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-43G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-43G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-43G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-43G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-43G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-43G>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

5-161569128-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569128
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569127
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-40delT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-40delT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-40delT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-40delT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-40delT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-40delT
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-40delT
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7215
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: AT
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

5-161569138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569138
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569138
    reference: chr 5
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-32G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-32G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-32G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-32G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-32G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-32G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-32G>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

5-161569138-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569138
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569138
    reference: chr 5
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-32G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-32G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-32G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-32G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-32G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-32G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-32G>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-161569142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569142
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569142
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-28G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-28G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-28G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-28G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-28G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-28G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-28G>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-161569142-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569142
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569142
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-28G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-28G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-28G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-28G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-28G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-28G>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-28G>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32412
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-161569146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569146
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569146
    reference: chr 5
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-24G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-24G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-24G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-24G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-24G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-24G>A
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-24G>A
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32415
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/5-161569152-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569152
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569152
    reference: chr 5
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-18A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-18A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-18A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-18A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-18A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-18A>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-18A>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32410
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4153
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

5-161569153-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569153
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569153
    reference: chr 5
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-17T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-17T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-17T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-17T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-17T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-17T>C
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-17T>C
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

5-161569154-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 161569154
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 161569154
    reference: chr 5
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430124
  ensembl transcript: ENST00000523372
  gene symbol: GABRG2
  hgvsc: ENST00000523372.1:c.*735-16C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430732
  ensembl transcript: ENST00000522990
  gene symbol: GABRG2
  hgvsc: ENST00000522990.1:c.*372-16C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000377510
  ensembl transcript: ENST00000393933
  gene symbol: GABRG2
  hgvsc: ENST00000393933.4:c.485-16C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000430182
  ensembl transcript: ENST00000522053
  gene symbol: GABRG2
  hgvsc: ENST00000522053.1:c.485-16C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000349000
  ensembl transcript: ENST00000356592
  gene symbol: GABRG2
  hgvsc: ENST00000356592.3:c.770-16C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000354651
  ensembl transcript: ENST00000361925
  gene symbol: GABRG2
  hgvsc: ENST00000361925.4:c.770-16C>T
  variant of: http://identifiers.org/hgnc/4087
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113327
  ensembl protein: ENSP00000410732
  ensembl transcript: ENST00000414552
  gene symbol: GABRG2
  hgvsc: ENST00000414552.2:c.890-16C>T
  variant of: http://identifiers.org/hgnc/4087
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11160
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.885729518393461e-5
allele num: 11254
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.146341463414634e-3
allele num: 10250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

FS
type: SiteQuality
SIO_000300: 1.651e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQ
type: SiteQuality
SIO_000300: 5.99e1

DP
type: SiteQuality
SIO_000300: 1.959753e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.902e0

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 407
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.0960741282614e-5
allele num: 65616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
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MQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.957244e6

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 8.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524576167825345e-5
allele num: 65592
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.952506e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.733e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.382e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.62450821921986e-5
allele num: 65578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.943374e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
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SIO_000300: -2.861e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.259e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.060256449490467e-5
allele num: 65354
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.905031e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
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SIO_000300: -1.077e0

FS
type: SiteQuality
SIO_000300: 3.309e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.314e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.231830500123183e-4
allele num: 16236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.894304e6

FS
type: SiteQuality
SIO_000300: 1.4508e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.492e0

MQRankSum
type: SiteQuality
SIO_000300: -7.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.198e0

QD
type: SiteQuality
SIO_000300: 9.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 179

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 695
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variant carriers: 1

Other
type: Population
allele count: 2
allele frequency: 2.298850574712644e-3
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539740707664829e-5
allele num: 64946
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

South Asian
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allele count: 176
allele frequency: 1.088300766757358e-2
allele num: 16172
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.409e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.854674e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
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allele frequency: 6.188884762965714e-5
allele num: 16158
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.083279375944255e-5
allele num: 64866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.847518e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele count: 1
allele frequency: 6.218905472636816e-5
allele num: 16080
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64042
num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.561475281846288e-5
allele num: 64042
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8334
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10066
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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QD
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BaseQRankSum
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MQ
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.73134328358209e-4
allele num: 2680
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

VQSLOD
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SIO_000300: 3.53e0

InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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DP
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SIO_000300: 2.64562e5

MQ
type: SiteQuality
SIO_000300: 5.881e1

QD
type: SiteQuality
SIO_000300: 3.93e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2891
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.73134328358209e-4
allele num: 2680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.09e-2

DP
type: SiteQuality
SIO_000300: 2.64562e5

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.961e0

VQSLOD
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SIO_000300: 3.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

QD
type: SiteQuality
SIO_000300: 3.93e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 92
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

South Asian
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allele frequency: 8.103727714748784e-4
allele num: 7404
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.48e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

MQRankSum
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SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

MQ
type: SiteQuality
SIO_000300: 5.877e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.663e0

VQSLOD
type: SiteQuality
SIO_000300: -1.901e0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2694
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 122
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 4
allele frequency: 2.127659574468085e-2
allele num: 188
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.678e1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.64e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.239e0

QD
type: SiteQuality
SIO_000300: 1.721e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.66152e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 1.785e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

South Asian
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allele frequency: 1.335113484646195e-4
allele num: 7490
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.038e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

FS
type: SiteQuality
SIO_000300: 2.117e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.181e0

VQSLOD
type: SiteQuality
SIO_000300: -1.782e0

QD
type: SiteQuality
SIO_000300: 1.581e1

DP
type: SiteQuality
SIO_000300: 2.65798e5

GenotypeQuality
all individuals: 140
bin: 6.25e1
variant carriers: 14

GenotypeQuality
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bin: 2.5e0
variant carriers: 4

GenotypeQuality
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variant carriers: 193

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 14

GenotypeQuality
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variant carriers: 18

GenotypeQuality
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variant carriers: 20

GenotypeQuality
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variant carriers: 15

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 5018

Other
type: Population
allele count: 89
allele frequency: 7.416666666666667e-1
allele num: 120
num of homozygotes: 31

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 73
allele frequency: 7.934782608695652e-1
allele num: 92
num of homozygotes: 29

African
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allele count: 167
allele frequency: 8.520408163265306e-1
allele num: 196
num of homozygotes: 70

East Asian
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allele count: 105
allele frequency: 7.954545454545454e-1
allele num: 132
num of homozygotes: 43

European (Non-Finnish)
type: Population
allele count: 2133
allele frequency: 7.807467057101025e-1
allele num: 2732
num of homozygotes: 835

South Asian
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allele count: 6269
allele frequency: 8.363127001067235e-1
allele num: 7496
num of homozygotes: 2631

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.744e-1

DP
type: SiteQuality
SIO_000300: 3.34637e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

QD
type: SiteQuality
SIO_000300: 2.609e1

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 271
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.733e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.91e-2

DP
type: SiteQuality
SIO_000300: 1.69166e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 4.081632653061224e-2
allele num: 196
num of homozygotes: 1

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 2660
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Latino
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allele frequency: 1.08695652173913e-2
allele num: 92
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South Asian
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allele frequency: 1.34698275862069e-4
allele num: 7424
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QD
type: SiteQuality
SIO_000300: 1.729e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

BaseQRankSum
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SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.35e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

FS
type: SiteQuality
SIO_000300: 2.35e0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

DP
type: SiteQuality
SIO_000300: 1.67403e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.34517083669626e-4
allele num: 7434
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 4.081632653061224e-2
allele num: 196
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Latino
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allele num: 92
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Other
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East Asian
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MQ
type: SiteQuality
SIO_000300: 5.85e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.806e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 6.8e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.765060240963856e-4
allele num: 2656
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 7428
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

FS
type: SiteQuality
SIO_000300: 7.93e-1

DP
type: SiteQuality
SIO_000300: 1.66453e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.11e-1

GenotypeQuality
all individuals: 1645
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.353179972936401e-4
allele num: 7390
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.335e0

MQ
type: SiteQuality
SIO_000300: 5.873e1

DP
type: SiteQuality
SIO_000300: 1.64486e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.424e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.94e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.24e1

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 1.25e1
variant carriers: 10

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
all individuals: 16
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variant carriers: 3

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 9

South Asian
type: Population
allele count: 762
allele frequency: 1.033640803038524e-1
allele num: 7372
num of homozygotes: 47

Other
type: Population
allele count: 12
allele frequency: 1.016949152542373e-1
allele num: 118
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 9.782608695652174e-2
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 1.237113402061856e-1
allele num: 194
num of homozygotes: 2

East Asian
type: Population
allele count: 5
allele frequency: 3.787878787878788e-2
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 307
allele frequency: 1.169078446306169e-1
allele num: 2626
num of homozygotes: 13

BaseQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

DP
type: SiteQuality
SIO_000300: 1.63468e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.39e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

GenotypeQuality
all individuals: 721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 2.105263157894737e-2
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.37211855104281e-4
allele num: 7288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-2

DP
type: SiteQuality
SIO_000300: 1.49383e5

FS
type: SiteQuality
SIO_000300: 1.626e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.841e0

QD
type: SiteQuality
SIO_000300: 1.208e1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 2962
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variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 8.771929824561403e-3
allele num: 114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.572776665713469e-3
allele num: 6994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.172e-1

DP
type: SiteQuality
SIO_000300: 1.35597e5

GenotypeQuality
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
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variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.567889620570712e-4
allele num: 6378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.881e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

QD
type: SiteQuality
SIO_000300: 1.666e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.54e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.255e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.1431e5

GenotypeQuality
all individuals: 340
bin: 3.75e1
variant carriers: 330

GenotypeQuality
all individuals: 29
bin: 6.75e1
variant carriers: 29

GenotypeQuality
all individuals: 817
bin: 7.5e0
variant carriers: 404

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 149

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 121

GenotypeQuality
all individuals: 340
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variant carriers: 317

GenotypeQuality
all individuals: 50
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variant carriers: 48

GenotypeQuality
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variant carriers: 34

GenotypeQuality
all individuals: 58
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variant carriers: 58

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 95

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 699
allele frequency: 6.657142857142857e-1
allele num: 1050
num of homozygotes: 222

South Asian
type: Population
allele count: 2196
allele frequency: 7.295681063122924e-1
allele num: 3010
num of homozygotes: 785

Latino
type: Population
allele count: 27
allele frequency: 6.75e-1
allele num: 40
num of homozygotes: 9

East Asian
type: Population
allele count: 88
allele frequency: 7.457627118644068e-1
allele num: 118
num of homozygotes: 34

African
type: Population
allele count: 68
allele frequency: 6.938775510204082e-1
allele num: 98
num of homozygotes: 23

Other
type: Population
allele count: 27
allele frequency: 6.428571428571429e-1
allele num: 42
num of homozygotes: 7

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.192e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.140000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.702e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 5.3993e4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
all individuals: 1
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.71e-2

DP
type: SiteQuality
SIO_000300: 4.6832e4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.611e1

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 865
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516346212167162e-5
allele num: 65948
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.363507445048452e-4
allele num: 8462
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.313e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 3.995e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

DP
type: SiteQuality
SIO_000300: 2.171914e6

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

GenotypeQuality
all individuals: 413
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variant carriers: 0

GenotypeQuality
all individuals: 1032
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 1256
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GenotypeQuality
all individuals: 14591
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6739
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variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.081245439065921e-5
allele num: 16444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.398356930606537e-3
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515702679762338e-5
allele num: 65976
num of homozygotes: 0

African
type: Population
allele count: 309
allele frequency: 3.049743387287801e-2
allele num: 10132
num of homozygotes: 10

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.183106e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.765e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.17e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 871
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variant carriers: 0

GenotypeQuality
all individuals: 6913
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variant carriers: 0

GenotypeQuality
all individuals: 529
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GenotypeQuality
all individuals: 2887
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GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 3972
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GenotypeQuality
all individuals: 670
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GenotypeQuality
all individuals: 4665
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GenotypeQuality
all individuals: 821
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GenotypeQuality
all individuals: 15556
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variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.028100775193798e-5
allele num: 66048
num of homozygotes: 0

BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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SIO_000300: 2.18e-1

MQRankSum
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SIO_000300: 1.24e0

InbreedingCoeff
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DP
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SIO_000300: 2.195435e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66380
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
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allele frequency: 9.394081728511038e-4
allele num: 8516
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Other
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allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16476
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
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MQRankSum
type: SiteQuality
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VQSLOD
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
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SIO_000300: -3.102e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8514
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African
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allele frequency: 0.0e0
allele num: 10278
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South Asian
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allele count: 7
allele frequency: 4.248604030104394e-4
allele num: 16476
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66408
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
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Other
type: Population
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allele num: 902
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QD
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MQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.82e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.235151e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.36e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737619461337967e-4
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10284
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 9.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

FS
type: SiteQuality
SIO_000300: 6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.327e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.43e-1

DP
type: SiteQuality
SIO_000300: 2.235231e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.721952167995334e-5
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.022463789936463e-5
allele num: 66418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

DP
type: SiteQuality
SIO_000300: 2.236032e6

FS
type: SiteQuality
SIO_000300: 5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.952e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
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South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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QD
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FS
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MQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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allele num: 8534
num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.552352048558422e-4
allele num: 6590
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Other
type: Population
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66534
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Latino
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African
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South Asian
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Other
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African
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East Asian
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Latino
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European (Non-Finnish)
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allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

South Asian
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MQ
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QD
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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DP
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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Other
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South Asian
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African
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 8552
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Latino
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European (Finnish)
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South Asian
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African
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Other
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European (Non-Finnish)
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allele frequency: 6.001320290463902e-5
allele num: 66652
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 1.726e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.297e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.98e-1

FS
type: SiteQuality
SIO_000300: 1.726e0

DP
type: SiteQuality
SIO_000300: 2.243032e6

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.242896e6

FS
type: SiteQuality
SIO_000300: 2.009e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.5e0

MQRankSum
type: SiteQuality
SIO_000300: -4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
SIO_000300: -6.183e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.131e0

QD
type: SiteQuality
SIO_000300: 8.51e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.22e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 2.242974e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.436e0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 189

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 184
allele frequency: 1.770933589990376e-2
allele num: 10390
num of homozygotes: 2

Latino
type: Population
allele count: 5
allele frequency: 4.329754069968826e-4
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000390050706592e-5
allele num: 66658
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 2.252253e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

QD
type: SiteQuality
SIO_000300: 1.504e1

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15547
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4033
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.696e1

VQSLOD
type: SiteQuality
SIO_000300: -1.04e0

DP
type: SiteQuality
SIO_000300: 2.243689e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.289e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

QD
type: SiteQuality
SIO_000300: 2.5e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.695e0

MQRankSum
type: SiteQuality
SIO_000300: -6.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.515e0

DP
type: SiteQuality
SIO_000300: 2.243873e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817961459217065e-4
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.049e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.139e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.198e0

VQSLOD
type: SiteQuality
SIO_000300: -6.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.807e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.507951356407858e-4
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.649e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

FS
type: SiteQuality
SIO_000300: 1.2525e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.243208e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 67

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4768
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597852441981296e-4
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 51
allele frequency: 3.090159961221522e-3
allele num: 16504
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.951248799231508e-4
allele num: 66624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.272e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

DP
type: SiteQuality
SIO_000300: 2.246595e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

FS
type: SiteQuality
SIO_000300: 2.813e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.36e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 10

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4771
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.454545454545455e-4
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

FS
type: SiteQuality
SIO_000300: 2.882e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 2.240673e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

GenotypeQuality
all individuals: 551
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15551
bin: 9.75e1
variant carriers: 18

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.039861351819757e-3
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.011985941301932e-5
allele num: 66578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

DP
type: SiteQuality
SIO_000300: 2.238331e6

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.48e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 555
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.237957e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

QD
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 3172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1862
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.777062609713282e-4
allele num: 10254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 2.237341e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7182
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.008893161879582e-5
allele num: 66568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.79e0

DP
type: SiteQuality
SIO_000300: 2.236334e6

VQSLOD
type: SiteQuality
SIO_000300: -4.091e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-1

FS
type: SiteQuality
SIO_000300: 4.6416e1

MQRankSum
type: SiteQuality
SIO_000300: -3.562e0

MQ
type: SiteQuality
SIO_000300: 5.445e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7038
bin: 6.75e1
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GenotypeQuality
all individuals: 15539
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3132
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.93721817551162e-4
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

DP
type: SiteQuality
SIO_000300: 2.225249e6

FS
type: SiteQuality
SIO_000300: 1.399e0

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

QD
type: SiteQuality
SIO_000300: 1.359e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15534
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.475e0

DP
type: SiteQuality
SIO_000300: 2.225166e6

GenotypeQuality
all individuals: 701
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17725
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 15539
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.274117218784128e-3
allele num: 16482
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513314277117496e-5
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

DP
type: SiteQuality
SIO_000300: 2.216375e6

QD
type: SiteQuality
SIO_000300: 1.412e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.581e0

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 1.644e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.69e-2

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4704
bin: 7.75e1
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GenotypeQuality
all individuals: 966
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variant carriers: 0

GenotypeQuality
all individuals: 148
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GenotypeQuality
all individuals: 184
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GenotypeQuality
all individuals: 587
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variant carriers: 0

GenotypeQuality
all individuals: 1854
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GenotypeQuality
all individuals: 879
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GenotypeQuality
all individuals: 3103
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GenotypeQuality
all individuals: 15528
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.511e0

DP
type: SiteQuality
SIO_000300: 2.207925e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.94e0

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

GenotypeQuality
all individuals: 980
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
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GenotypeQuality
all individuals: 15420
bin: 6.25e1
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GenotypeQuality
all individuals: 196
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GenotypeQuality
all individuals: 1348
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GenotypeQuality
all individuals: 6725
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GenotypeQuality
all individuals: 408
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GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 15528
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3991
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.518344478583047e-5
allele num: 66396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 7.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.75e-1

DP
type: SiteQuality
SIO_000300: 2.203432e6

QD
type: SiteQuality
SIO_000300: 1.406e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

GenotypeQuality
all individuals: 4680
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.177e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 1.086e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 2.202251e6

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

GenotypeQuality
all individuals: 1049
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.204e1

FS
type: SiteQuality
SIO_000300: 7.202e0

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.203e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.200315e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.159e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 7208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32422
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.938020351526364e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

DP
type: SiteQuality
SIO_000300: 3.126851e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32418
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.15e-1

FS
type: SiteQuality
SIO_000300: 2.524e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.894e0

QD
type: SiteQuality
SIO_000300: 1.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

DP
type: SiteQuality
SIO_000300: 3.126498e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.98e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 2158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32417
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4381
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

QD
type: SiteQuality
SIO_000300: 1.545e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.44e-1

DP
type: SiteQuality
SIO_000300: 3.126421e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 3.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32415
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4234
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 4.586e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.059e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 3.126746e6

GenotypeQuality
all individuals: 2075
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32415
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

FS
type: SiteQuality
SIO_000300: 4.586e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 3.126746e6

QD
type: SiteQuality
SIO_000300: 1.178e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.059e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32412
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variant carriers: 1

GenotypeQuality
all individuals: 4234
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.686e0

QD
type: SiteQuality
SIO_000300: 1.063e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 3.126353e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.046e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.063e1

FS
type: SiteQuality
SIO_000300: 3.686e0

DP
type: SiteQuality
SIO_000300: 3.126353e6

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.046e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 4059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 7222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2156
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variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.222e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.953e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e0

FS
type: SiteQuality
SIO_000300: 7.885e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.219e0

DP
type: SiteQuality
SIO_000300: 3.126248e6

VQSLOD
type: SiteQuality
SIO_000300: -2.683e0

GenotypeQuality
all individuals: 2157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-1

FS
type: SiteQuality
SIO_000300: 2.512e0

QD
type: SiteQuality
SIO_000300: 1.361e1

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.126177e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7229
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4060
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32409
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

DP
type: SiteQuality
SIO_000300: 3.126153e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1