6-17507406-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507406
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507406
    reference: chr 6
allele count: 8
allele frequency: 6.594457358590106e-5
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*209G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.229G>A
  hgvsp: ENSP00000420615.1:p.Val77Met
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35662G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32094G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.229G>A
  hgvsp: ENSP00000368275.2:p.Val77Met
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.307G>A
  hgvsp: ENSP00000229922.2:p.Val103Met
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.307G>A
  hgvsp: ENSP00000418604.1:p.Val103Met
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39557
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 6631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val103Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-17507412-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507412
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507412
    reference: chr 6
allele count: 4
allele frequency: 3.296467834715103e-5
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.313G>A
  hgvsp: ENSP00000229922.2:p.Ala105Thr
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.235G>A
  hgvsp: ENSP00000368275.2:p.Ala79Thr
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32088G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*215G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35656G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.313G>A
  hgvsp: ENSP00000418604.1:p.Ala105Thr
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.235G>A
  hgvsp: ENSP00000420615.1:p.Ala79Thr
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6349
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6642
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala105Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

6-17507416-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507416
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507416
    reference: chr 6
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.317T>C
  hgvsp: ENSP00000229922.2:p.Leu106Pro
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*219T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.239T>C
  hgvsp: ENSP00000368275.2:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35652T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.239T>C
  hgvsp: ENSP00000420615.1:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32084T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.317T>C
  hgvsp: ENSP00000418604.1:p.Leu106Pro
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39549
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu106Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

6-17507427-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507427
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507427
    reference: chr 6
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35641A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32073A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*230A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.328A>G
  hgvsp: ENSP00000229922.2:p.Ile110Val
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.250A>G
  hgvsp: ENSP00000368275.2:p.Ile84Val
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.328A>G
  hgvsp: ENSP00000418604.1:p.Ile110Val
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.250A>G
  hgvsp: ENSP00000420615.1:p.Ile84Val
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile110Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/6-17507431-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507431
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507431
    reference: chr 6
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.254C>A
  hgvsp: ENSP00000420615.1:p.Ser85Ter
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.254C>A
  hgvsp: ENSP00000368275.2:p.Ser85Ter
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.332C>A
  hgvsp: ENSP00000229922.2:p.Ser111Ter
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*234C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.332C>A
  hgvsp: ENSP00000418604.1:p.Ser111Ter
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35637C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32069C>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39545
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser111Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

6-17507432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507432
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507432
    reference: chr 6
allele count: 6
allele frequency: 4.943072284193702e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*235G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.255G>A
  hgvsp: ENST00000479291.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35636G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.333G>A
  hgvsp: ENST00000229922.2:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32068G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.333G>A
  hgvsp: ENST00000465994.1:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.255G>A
  hgvsp: ENST00000378990.2:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser111Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

6-17507437-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507437
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507437
    reference: chr 6
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.338A>T
  hgvsp: ENSP00000229922.2:p.Lys113Met
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.260A>T
  hgvsp: ENSP00000368275.2:p.Lys87Met
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.338A>T
  hgvsp: ENSP00000418604.1:p.Lys113Met
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32063A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35631A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*240A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.260A>T
  hgvsp: ENSP00000420615.1:p.Lys87Met
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys113Met
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/6-17507469-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507469
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507469
    reference: chr 6
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35599A>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32031A>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.370A>C
  hgvsp: ENSP00000418604.1:p.Asn124His
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.292A>C
  hgvsp: ENSP00000368275.2:p.Asn98His
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.292A>C
  hgvsp: ENSP00000420615.1:p.Asn98His
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.370A>C
  hgvsp: ENSP00000229922.2:p.Asn124His
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*272A>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39540
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6694
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn124His
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

6-17507472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507472
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507472
    reference: chr 6
allele count: 11
allele frequency: 9.061254077564335e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.295C>T
  hgvsp: ENSP00000420615.1:p.Arg99Trp
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*275C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.373C>T
  hgvsp: ENSP00000229922.2:p.Arg125Trp
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35596C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.295C>T
  hgvsp: ENSP00000368275.2:p.Arg99Trp
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.373C>T
  hgvsp: ENSP00000418604.1:p.Arg125Trp
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32028C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg125Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

6-17507474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507474
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507474
    reference: chr 6
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32026G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.297G>A
  hgvsp: ENST00000479291.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.375G>A
  hgvsp: ENST00000229922.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.297G>A
  hgvsp: ENST00000378990.2:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35594G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*277G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.375G>A
  hgvsp: ENST00000465994.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg125Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-17507485-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507485
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507485
    reference: chr 6
allele count: 4
allele frequency: 3.294838635277837e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.308T>C
  hgvsp: ENSP00000368275.2:p.Met103Thr
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32015T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.386T>C
  hgvsp: ENSP00000418604.1:p.Met129Thr
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*288T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.386T>C
  hgvsp: ENSP00000229922.2:p.Met129Thr
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35583T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.308T>C
  hgvsp: ENSP00000420615.1:p.Met103Thr
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met129Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

6-17507492-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507492
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507492
    reference: chr 6
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*295T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.393T>C
  hgvsp: ENST00000465994.1:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32008T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.315T>C
  hgvsp: ENST00000479291.1:c.315T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.393T>C
  hgvsp: ENST00000229922.2:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35576T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.315T>C
  hgvsp: ENST00000378990.2:c.315T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6743
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn131Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

6-17507500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507500
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507500
    reference: chr 6
allele count: 8
allele frequency: 6.589785831960461e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.323C>T
  hgvsp: ENSP00000368275.2:p.Ser108Leu
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.401C>T
  hgvsp: ENSP00000418604.1:p.Ser134Leu
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*303C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-32000C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35568C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.323C>T
  hgvsp: ENSP00000420615.1:p.Ser108Leu
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.401C>T
  hgvsp: ENSP00000229922.2:p.Ser134Leu
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39534
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser134Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

6-17507504-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507504
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507504
    reference: chr 6
allele count: 40
allele frequency: 3.294838635277837e-4
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.327C>G
  hgvsp: ENST00000479291.1:c.327C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.405C>G
  hgvsp: ENST00000465994.1:c.405C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31996C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35564C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.405C>G
  hgvsp: ENST00000229922.2:c.405C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*307C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.327C>G
  hgvsp: ENST00000378990.2:c.327C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39539
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala135Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-17507504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507504
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507504
    reference: chr 6
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.327C>T
  hgvsp: ENST00000479291.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.327C>T
  hgvsp: ENST00000378990.2:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31996C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*307C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35564C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.405C>T
  hgvsp: ENST00000229922.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.405C>T
  hgvsp: ENST00000465994.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6742
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala135Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

6-17507505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507505
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507505
    reference: chr 6
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31995G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.328G>A
  hgvsp: ENSP00000368275.2:p.Val110Ile
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.328G>A
  hgvsp: ENSP00000420615.1:p.Val110Ile
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*308G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.406G>A
  hgvsp: ENSP00000229922.2:p.Val136Ile
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35563G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.406G>A
  hgvsp: ENSP00000418604.1:p.Val136Ile
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val136Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

6-17507510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507510
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507510
    reference: chr 6
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31990C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.333C>T
  hgvsp: ENST00000479291.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*313C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.411C>T
  hgvsp: ENST00000229922.2:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.411C>T
  hgvsp: ENST00000465994.1:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35558C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.333C>T
  hgvsp: ENST00000378990.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser137Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-17507511-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507511
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507511
    reference: chr 6
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35557G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*314G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.412G>A
  hgvsp: ENSP00000418604.1:p.Glu138Lys
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31989G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.334G>A
  hgvsp: ENSP00000420615.1:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.334G>A
  hgvsp: ENSP00000368275.2:p.Glu112Lys
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.412G>A
  hgvsp: ENSP00000229922.2:p.Glu138Lys
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu138Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

6-17507514-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507514
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507514
    reference: chr 6
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.415A>G
  hgvsp: ENSP00000418604.1:p.Ser139Gly
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31986A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35554A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.337A>G
  hgvsp: ENSP00000368275.2:p.Ser113Gly
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*317A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.337A>G
  hgvsp: ENSP00000420615.1:p.Ser113Gly
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.415A>G
  hgvsp: ENSP00000229922.2:p.Ser139Gly
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser139Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

6-17507522-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507522
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507522
    reference: chr 6
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.345T>C
  hgvsp: ENST00000378990.2:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35546T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31978T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.423T>C
  hgvsp: ENST00000465994.1:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.423T>C
  hgvsp: ENST00000229922.2:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.345T>C
  hgvsp: ENST00000479291.1:c.345T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*325T>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro141Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

6-17507525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507525
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507525
    reference: chr 6
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31975C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.348C>T
  hgvsp: ENST00000378990.2:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.426C>T
  hgvsp: ENST00000465994.1:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*328C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.426C>T
  hgvsp: ENST00000229922.2:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.348C>T
  hgvsp: ENST00000479291.1:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35543C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala142Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

6-17507542-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507542
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507542
    reference: chr 6
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35526T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.365T>C
  hgvsp: ENSP00000420615.1:p.Val122Ala
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.443T>C
  hgvsp: ENSP00000418604.1:p.Val148Ala
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31958T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*345T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.443T>C
  hgvsp: ENSP00000229922.2:p.Val148Ala
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.365T>C
  hgvsp: ENSP00000368275.2:p.Val122Ala
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39511
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val148Ala
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

6-17507546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507546
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507546
    reference: chr 6
allele count: 17
allele frequency: 1.401114297959318e-4
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+3G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35522G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31954G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+3G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+3G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+3G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+3G>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.444+3G>A
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-17507554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507554
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507554
    reference: chr 6
allele count: 20
allele frequency: 1.648804616652927e-4
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+11G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+11G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+11G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+11G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+11G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31946G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35514G>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39505
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-17507559-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507559
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507559
    reference: chr 6
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+16A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+16A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+16A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+16A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31941A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35509A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+16A>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-17507573-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507573
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507573
    reference: chr 6
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+30C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+30C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+30C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35495C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+30C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31927C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+30C>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

6-17507577-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507577
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507577
    reference: chr 6
allele count: 2
allele frequency: 1.650546330835507e-5
allele num: 121172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+34A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35491A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+34A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+34A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+34A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31923A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+34A>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39486
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

6-17507578-TCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507578
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507576
    reference: chr 6
allele count: 2
allele frequency: 1.650737054094653e-5
allele num: 121158
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+39_444+40delAC
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35486_223-35485delAC
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+39_366+40delAC
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+39_366+40delAC
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31918_301-31917delAC
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+39_444+40delAC
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+39_*346+40delAC
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: TCA
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

6-17507581-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507581
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507581
    reference: chr 6
allele count: 2
allele frequency: 1.65188231990353e-5
allele num: 121074
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+38C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31919C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+38C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+38C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+38C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+38C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35487C>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2661
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-17507583-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507583
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507583
    reference: chr 6
allele count: 2
allele frequency: 1.652701340340787e-5
allele num: 121014
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+40C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35485C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+40C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+40C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31917C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+40C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+40C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

6-17507584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507584
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507584
    reference: chr 6
allele count: 2
allele frequency: 1.652046059044126e-5
allele num: 121062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+41G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+41G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+41G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35484G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+41G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+41G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31916G>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

6-17507591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507591
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507591
    reference: chr 6
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+48G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+48G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+48G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+48G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31909G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+48G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35477G>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39471
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

6-17507594-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507594
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507594
    reference: chr 6
allele count: 1
allele frequency: 8.292561572269675e-6
allele num: 120590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35474T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31906T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+51T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+51T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+51T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+51T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+51T>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

6-17507595-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507595
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507595
    reference: chr 6
allele count: 2
allele frequency: 1.659448067572725e-5
allele num: 120522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*346+52T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.366+52T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.444+52T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.366+52T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+52T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31905T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35473T>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

6-17507823-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507823
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507823
    reference: chr 6
allele count: 4
allele frequency: 3.312848884398138e-5
allele num: 120742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-49T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+280T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35245T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31677T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-49T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-49T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-49T>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8693
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24241
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

6-17507827-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507827
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507828
    reference: chr 6
allele count: 174
allele frequency: 1.635615047658438e-3
allele num: 106382
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-36dupT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-36dupT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-36dupT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31664dupT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-36dupT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35232dupT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+293dupT
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 2.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 1.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6451
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 2.5e0
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 4.25e1
  variant carriers: 14
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

6-17507827-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507827
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507826
    reference: chr 6
allele count: 90
allele frequency: 8.460077832716061e-4
allele num: 106382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-36delT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-36delT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31664delT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-36delT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-36delT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35232delT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+293delT
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5344
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 2.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 7.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 2.25e1
  variant carriers: 13
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: AT
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

6-17507828-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507828
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507828
    reference: chr 6
allele count: 1
allele frequency: 9.646550393579256e-6
allele num: 103664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+285T>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-44T>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-44T>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35240T>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-44T>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-44T>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31672T>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14668
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

6-17507834-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507834
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507834
    reference: chr 6
allele count: 2
allele frequency: 1.653302471687195e-5
allele num: 120970
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-38T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-38T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-38T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-38T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31666T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+291T>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35234T>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

6-17507837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507837
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507837
    reference: chr 6
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35231C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+294C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31663C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-35C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-35C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-35C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-35C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4046
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

6-17507838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507838
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507838
    reference: chr 6
allele count: 2
allele frequency: 1.652209830648492e-5
allele num: 121050
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-34C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-34C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-34C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31662C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+295C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35230C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-34C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12490
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6607
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

6-17507843-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507843
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507843
    reference: chr 6
allele count: 2
allele frequency: 1.649212501030758e-5
allele num: 121270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-29A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+300A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-29A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31657A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-29A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-29A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35225A>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19430
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3021
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-17507851-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507851
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507851
    reference: chr 6
allele count: 4
allele frequency: 3.295924589245398e-5
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35217G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-21G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-21G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-21G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31649G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-21G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+308G>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5248
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

6-17507855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507855
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507855
    reference: chr 6
allele count: 7
allele frequency: 5.767012687427912e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-17C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-17C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-17C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+312C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-17C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31645C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35213C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19435
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 13162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6695
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

6-17507859-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507859
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507859
    reference: chr 6
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-13C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-13C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-13C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31641C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35209C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-13C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+316C>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4845
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19430
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-17507860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507860
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507860
    reference: chr 6
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-12C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-12C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35208C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-12C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31640C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-12C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+317C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9271
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-17507869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507869
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507869
    reference: chr 6
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35199C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+326C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*347-3C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.367-3C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31631C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.445-3C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.367-3C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19431
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4843
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5252
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: c.445-3C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

6-17507883-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507883
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507883
    reference: chr 6
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35185T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*358T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.378T>C
  hgvsp: ENST00000378990.2:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.378T>C
  hgvsp: ENST00000479291.1:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+340T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.456T>C
  hgvsp: ENST00000229922.2:c.456T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31617T>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19431
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro152Pro
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

6-17507897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507897
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507897
    reference: chr 6
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35171A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.470A>G
  hgvsp: ENSP00000229922.2:p.Lys157Arg
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.392A>G
  hgvsp: ENSP00000368275.2:p.Lys131Arg
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31603A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.392A>G
  hgvsp: ENSP00000420615.1:p.Lys131Arg
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*372A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+354A>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19432
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys157Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-17507901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507901
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507901
    reference: chr 6
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+358G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.396G>A
  hgvsp: ENST00000479291.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31599G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.396G>A
  hgvsp: ENST00000378990.2:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.474G>A
  hgvsp: ENST00000229922.2:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35167G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*376G>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu158Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

6-17507910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507910
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507910
    reference: chr 6
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35158C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.405C>T
  hgvsp: ENST00000378990.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31590C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.483C>T
  hgvsp: ENST00000229922.2:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*385C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+367C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.405C>T
  hgvsp: ENST00000479291.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13277
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp161Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

6-17507911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507911
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507911
    reference: chr 6
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.406G>A
  hgvsp: ENSP00000368275.2:p.Ala136Thr
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.406G>A
  hgvsp: ENSP00000420615.1:p.Ala136Thr
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.484G>A
  hgvsp: ENSP00000229922.2:p.Ala162Thr
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*386G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35157G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+368G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31589G>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13281
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala162Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-17507935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507935
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507935
    reference: chr 6
allele count: 18
allele frequency: 1.482726239312015e-4
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.430G>A
  hgvsp: ENSP00000420615.1:p.Val144Ile
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35133G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+392G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.508G>A
  hgvsp: ENSP00000229922.2:p.Val170Ile
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.430G>A
  hgvsp: ENSP00000368275.2:p.Val144Ile
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*410G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31565G>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4098
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val170Ile
num of homozygotes: 1
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

6-17507959-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507959
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507960
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+417dupA
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+3dupA
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+3dupA
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+3dupA
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31540dupA
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+3dupA
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35108dupA
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5250
  bin: 7.75e1
  variant carriers: 0
hgvs: c.530+3dupA
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

6-17507960-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507960
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507960
    reference: chr 6
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+3A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31540A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+3A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+3A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+3A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+417A>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35108A>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4055
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: c.530+3A>T
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/6-17507961-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507961
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507961
    reference: chr 6
allele count: 68
allele frequency: 5.602702480019774e-4
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+4C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31539C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+4C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35107C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+4C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+418C>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+4C>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.530+4C>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

6-17507962-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507962
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507962
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+5G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+5G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+5G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+5G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35106G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+419G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31538G>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4837
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4059
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4101
  bin: 7.25e1
  variant carriers: 0
hgvs: c.530+5G>A
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

6-17507964-ACCTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507964
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507960
    reference: chr 6
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+12_530+15delCCTT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+12_452+15delCCTT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+12_*432+15delCCTT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31531_301-31528delCCTT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+12_452+15delCCTT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+426_444+429delCCTT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35099_223-35096delCCTT
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5248
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4837
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.530+12_530+15delCCTT
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: ACCTT
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

6-17507970-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507970
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507970
    reference: chr 6
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+13C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31530C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+13C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35098C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+13C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+13C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+427C>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5242
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

6-17507979-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507979
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507979
    reference: chr 6
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+22C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+436C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+22C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+22C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31521C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+22C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35089C>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6607
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4056
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

6-17507990-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17507990
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17507990
    reference: chr 6
allele count: 5
allele frequency: 4.124051468162323e-5
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31510G>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35078G>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+447G>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+33G>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+33G>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+33G>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+33G>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9239
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4815
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

6-17508001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17508001
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17508001
    reference: chr 6
allele count: 28
allele frequency: 2.311337108517277e-4
allele num: 121142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+44G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35067G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+44G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+458G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+44G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31499G>A
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+44G>A
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6053
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4042
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-17508001-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17508001
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17508001
    reference: chr 6
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+44G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+44G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35067G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+44G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+458G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31499G>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+44G>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

6-17508007-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17508007
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17508007
    reference: chr 6
allele count: 6
allele frequency: 4.958923582987586e-5
allele num: 120994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.452+50C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.530+50C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+464C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-31493C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.452+50C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*432+50C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-35061C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5138
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum

6-17514033-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17514033
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17514033
    reference: chr 6
allele count: 1
allele frequency: 9.041591320072333e-6
allele num: 110600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*433-47A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.453-47A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.531-47A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-25467A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-29035A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+6490A>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.453-47A>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17710
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2622
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4529
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5028
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

6-17514034-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17514034
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17514034
    reference: chr 6
allele count: 1
allele frequency: 9.008035167369294e-6
allele num: 111012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.453-46T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+6491T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.531-46T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*433-46T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-25466T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.453-46T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-29034T>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10629
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3855
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

6-17514042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17514042
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17514042
    reference: chr 6
allele count: 1
allele frequency: 8.849714154232818e-6
allele num: 112998
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.531-38C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-25458C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+6499C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.453-38C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-29026C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.453-38C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*433-38C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33635
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

6-17514046-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17514046
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17514044
    reference: chr 6
allele count: 1
allele frequency: 8.683419878084785e-6
allele num: 115162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*433-31_*433-30delCT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.453-31_453-30delCT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.453-31_453-30delCT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.531-31_531-30delCT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+6506_444+6507delCT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-29019_223-29018delCT
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-25451_301-25450delCT
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: ACT
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

6-17514049-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17514049
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17514049
    reference: chr 6
allele count: 1
allele frequency: 8.595939278284938e-6
allele num: 116334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*433-31C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.453-31C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+6506C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-25451C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.531-31C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.453-31C>G
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-29019C>G
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-17514050-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17514050
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17514050
    reference: chr 6
allele count: 1
allele frequency: 8.560178051703475e-6
allele num: 116820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+6507T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.453-30T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*433-30T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-29018T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.531-30T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-25450T>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.453-30T>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6380
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/6-17514076-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17514076
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17514076
    reference: chr 6
allele count: 2
allele frequency: 1.653521173338625e-5
allele num: 120954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-25424A>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*433-4A>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.453-4A>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.531-4A>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-28992A>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+6533A>C
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.453-4A>C
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
hgvs: c.531-4A>C
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

6-17514087-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17514087
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 17514087
    reference: chr 6
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000368275
  ensembl transcript: ENST00000378990
  gene symbol: CAP2
  hgvsc: ENST00000378990.2:c.460C>T
  hgvsp: ENSP00000368275.2:p.Arg154Cys
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000418604
  ensembl transcript: ENST00000465994
  gene symbol: CAP2
  hgvsc: ENST00000465994.1:c.444+6544C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000420615
  ensembl transcript: ENST00000479291
  gene symbol: CAP2
  hgvsc: ENST00000479291.1:c.460C>T
  hgvsp: ENSP00000420615.1:p.Arg154Cys
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000419906
  ensembl transcript: ENST00000476263
  gene symbol: CAP2
  hgvsc: ENST00000476263.1:c.*440C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417208
  ensembl transcript: ENST00000493172
  gene symbol: CAP2
  hgvsc: ENST00000493172.1:c.223-28981C>T
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000229922
  ensembl transcript: ENST00000229922
  gene symbol: CAP2
  hgvsc: ENST00000229922.2:c.538C>T
  hgvsp: ENSP00000229922.2:p.Arg180Cys
  variant of: http://identifiers.org/hgnc/20039
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112186
  ensembl protein: ENSP00000417705
  ensembl transcript: ENST00000489374
  gene symbol: CAP2
  hgvsc: ENST00000489374.1:c.301-25413C>T
  variant of: http://identifiers.org/hgnc/20039
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg180Cys
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3211
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.239854633555421e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

FS
type: SiteQuality
SIO_000300: 1.746e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.052919e6

QD
type: SiteQuality
SIO_000300: 1.166e1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39548
bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

FS
type: SiteQuality
SIO_000300: 3.21e0

QD
type: SiteQuality
SIO_000300: 1.546e1

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

DP
type: SiteQuality
SIO_000300: 3.052951e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.157e0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.126e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.118e1

VQSLOD
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SIO_000300: 6.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.052888e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.022e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: 4.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 1.521e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.053002e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.539e0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
SIO_000300: 1.601e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 8.990919171636647e-5
allele num: 66734
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 1.103e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.053032e6

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.468e0

MQRankSum
type: SiteQuality
SIO_000300: -3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.33e-2

FS
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.764e0

DP
type: SiteQuality
SIO_000300: 3.052847e6

QD
type: SiteQuality
SIO_000300: 1.12e1

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.41e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 2.89e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

DP
type: SiteQuality
SIO_000300: 3.052878e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.774706288873532e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.41e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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African
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Other
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MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

DP
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MQ
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.382e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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South Asian
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allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.99e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 7.491759065028469e-5
allele num: 66740
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ReadPosRankSum
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DP
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FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Latino
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allele frequency: 3.455425017277125e-4
allele num: 11576
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Other
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African
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allele num: 10406
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East Asian
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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Other
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European (Non-Finnish)
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East Asian
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South Asian
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DP
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InbreedingCoeff
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FS
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MQ
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QD
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Latino
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Other
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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Other
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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African
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allele frequency: 9.609840476648087e-5
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num of homozygotes: 0

European (Finnish)
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South Asian
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Other
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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African
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South Asian
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Latino
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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MQ
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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European (Finnish)
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Latino
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MQRankSum
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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QD
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.966227157066852e-3
allele num: 8646
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 20
allele frequency: 3.000030000300003e-4
allele num: 66666
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South Asian
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num of homozygotes: 0

VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
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QD
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DP
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InbreedingCoeff
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SIO_000300: 1.0e-4

ClippingRankSum
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FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66620
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East Asian
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allele num: 8638
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.429999999999999e-1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 3.026253e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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South Asian
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allele frequency: 1.218472036066772e-4
allele num: 16414
num of homozygotes: 0

ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66612
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African
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Latino
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South Asian
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Other
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num of homozygotes: 0

VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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South Asian
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Other
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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QD
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ClippingRankSum
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FS
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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East Asian
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.210408644888833e-5
allele num: 16102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.497e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.062e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.115e0

DP
type: SiteQuality
SIO_000300: 2.992918e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.925e0

VQSLOD
type: SiteQuality
SIO_000300: -1.164e-1

GenotypeQuality
all individuals: 1519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.75e1
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GenotypeQuality
all individuals: 868
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505479947007106e-5
allele num: 66424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.303e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.685e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 2.991857e6

MQ
type: SiteQuality
SIO_000300: 5.536e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.783e0

GenotypeQuality
all individuals: 521
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 2482
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 39471
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

FS
type: SiteQuality
SIO_000300: 7.13e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.991731e6

QD
type: SiteQuality
SIO_000300: 1.557e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
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variant carriers: 0

GenotypeQuality
all individuals: 4582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4745
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.426301103967002e-4
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.16e0

DP
type: SiteQuality
SIO_000300: 2.531268e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.564e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1882
bin: 3.75e1
variant carriers: 16

GenotypeQuality
all individuals: 4028
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1963
bin: 2.25e1
variant carriers: 35

GenotypeQuality
all individuals: 3184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2766
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1814
bin: 3.25e1
variant carriers: 32

GenotypeQuality
all individuals: 3355
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14736
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1620
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1754
bin: 2.75e1
variant carriers: 38

African
type: Population
allele count: 10
allele frequency: 1.082251082251082e-3
allele num: 9240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.176620076238882e-4
allele num: 6296
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 9.99000999000999e-4
allele num: 10010
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 9.143155694879833e-4
allele num: 7656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 78
allele frequency: 1.320020308004739e-3
allele num: 59090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

South Asian
type: Population
allele count: 67
allele frequency: 5.043661547726589e-3
allele num: 13284
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.08e-2

DP
type: SiteQuality
SIO_000300: 2.624867e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

GenotypeQuality
all individuals: 1754
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 3184
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1154
bin: 1.25e1
variant carriers: 24

GenotypeQuality
all individuals: 14736
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1287
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variant carriers: 4

GenotypeQuality
all individuals: 2766
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3355
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6451
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 954
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2063
bin: 8.75e1
variant carriers: 1

Latino
type: Population
allele count: 4
allele frequency: 3.996003996003996e-4
allele num: 10010
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.011141222523336e-4
allele num: 13284
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.224660397074191e-4
allele num: 7656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.176620076238882e-4
allele num: 6296
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.246753246753247e-4
allele num: 9240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 73
allele frequency: 1.235403621594178e-3
allele num: 59090
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-2

QD
type: SiteQuality
SIO_000300: 4.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 2.624867e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.08e-2

GenotypeQuality
all individuals: 946
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6570
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GenotypeQuality
all individuals: 936
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1492
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GenotypeQuality
all individuals: 1703
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variant carriers: 0

GenotypeQuality
all individuals: 1500
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variant carriers: 0

GenotypeQuality
all individuals: 2762
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GenotypeQuality
all individuals: 2067
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.735809755250825e-5
allele num: 57610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.578848e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.403e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 19439
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5243
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GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007880647295915e-5
allele num: 66492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.247e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e-1

QD
type: SiteQuality
SIO_000300: 1.791e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.43e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.488914e6

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
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GenotypeQuality
all individuals: 19425
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variant carriers: 1

GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 3016
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5222
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GenotypeQuality
all individuals: 12296
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.997e0

DP
type: SiteQuality
SIO_000300: 2.494011e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.469e0

VQSLOD
type: SiteQuality
SIO_000300: -5.184e0

FS
type: SiteQuality
SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: -1.706e0

QD
type: SiteQuality
SIO_000300: 1.017e1

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19430
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4847
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variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 4081
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5224
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.494913e6

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
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GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21256214380987e-4
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1044e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.431e1

DP
type: SiteQuality
SIO_000300: 2.498734e6

VQSLOD
type: SiteQuality
SIO_000300: -9.368e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.496807266840543e-5
allele num: 66714
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 2.500829e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

FS
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

QD
type: SiteQuality
SIO_000300: 1.584e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.496133325340207e-5
allele num: 66724
num of homozygotes: 0

African
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allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

QD
type: SiteQuality
SIO_000300: 1.481e1

FS
type: SiteQuality
SIO_000300: 1.952e0

DP
type: SiteQuality
SIO_000300: 2.501388e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.762e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.501206e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
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African
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num of homozygotes: 0

Other
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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DP
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
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African
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 1.498486528606108e-5
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South Asian
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East Asian
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Latino
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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FS
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DP
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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allele frequency: 0.0e0
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African
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Other
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South Asian
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European (Non-Finnish)
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allele frequency: 2.247797158784391e-4
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Finnish)
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Latino
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East Asian
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African
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European (Non-Finnish)
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VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
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DP
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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allele frequency: 2.591568762957844e-4
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European (Non-Finnish)
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allele frequency: 7.494229443328637e-5
allele num: 66718
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South Asian
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African
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East Asian
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Other
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BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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African
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East Asian
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European (Non-Finnish)
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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African
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Other
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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Other
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Latino
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European (Non-Finnish)
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -5.649999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.399e-1

FS
type: SiteQuality
SIO_000300: 3.074e0

QD
type: SiteQuality
SIO_000300: 1.213e1

MQ
type: SiteQuality
SIO_000300: 5.866e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.99970001499925e-5
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

DP
type: SiteQuality
SIO_000300: 2.486518e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.834e0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.199e0

QD
type: SiteQuality
SIO_000300: 1.383e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 28

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

African
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allele count: 28
allele frequency: 2.692307692307692e-3
allele num: 10400
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.295e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

DP
type: SiteQuality
SIO_000300: 2.467012e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.195e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.467012e6

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.195e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.295e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.511342126611184e-5
allele num: 66566
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.459008e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.368e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.373e1

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.373626373626374e-4
allele num: 7280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60706
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

QD
type: SiteQuality
SIO_000300: 8.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.718e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.301234e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.495193556767992e-5
allele num: 15396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60944
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.114e1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.415191172696946e-5
allele num: 15588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61896
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.255335174491589e-4
allele num: 7966
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African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15784
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62974
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.46111e6

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 15934
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.771929824561403e-5
allele num: 11400
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQ
type: SiteQuality
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.567250728771589e-5
allele num: 63806
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
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Other
type: Population
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 6.037e0

DP
type: SiteQuality
SIO_000300: 1.486942e6

MQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.452e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010959894014212e-5
allele num: 66424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.411e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: 8.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.538786e6

MQ
type: SiteQuality
SIO_000300: 6.0e1